Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004882.1 Hibiscus syriacus cultivar Beakdansim tig00011000_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136843

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
482--534
20
2.5
22
87
6
83
35
9
15
39
1.79
1081--2594
76
20.0
76
95
1
2715
22
21
21
33
1.97
1081--2594
227
6.7
228
96
1
2715
22
21
21
33
1.97
2752--2811
3
19.0
3
80
13
59
38
0
0
61
0.96
2749--2786
18
2.1
19
95
5
69
42
0
0
57
0.98
2752--2823
24
3.0
23
78
11
83
41
0
0
58
0.98
2754--2809
18
2.9
18
84
7
67
39
0
0
60
0.97
4137--4183
19
2.5
17
78
21
58
27
6
0
65
1.16
4131--4182
21
2.6
20
88
11
72
28
3
0
67
1.08
4239--4271
15
2.3
15
89
5
50
42
3
0
54
1.15
4639--4674
17
2.3
15
90
9
54
61
0
2
36
1.11
27847--27919
31
2.4
31
79
6
78
52
6
12
28
1.64
28114--28208
31
3.1
31
90
3
149
38
9
8
43
1.68
29547--29619
28
2.6
28
97
2
139
31
6
9
52
1.60
29688--29801
57
2.0
57
100
0
228
42
5
10
42
1.62
32817--32922
13
8.5
13
74
8
103
24
18
22
33
1.97
33041--33073
2
16.5
2
100
0
66
48
0
0
51
1.00
34554--34591
18
2.1
18
100
0
76
47
5
15
31
1.68
44105--44196
47
2.0
47
95
4
168
41
15
19
23
1.89
44232--44540
95
3.3
94
77
5
309
32
14
25
27
1.95
44927--45307
79
4.9
79
87
3
529
37
10
22
29
1.87
44927--45307
156
2.4
156
89
3
543
37
10
22
29
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45714--45748
2
17.5
2
100
0
70
51
0
0
48
1.00
58959--59026
11
6.3
11
70
14
52
57
2
1
38
1.23
59964--60013
25
2.0
25
100
0
100
32
4
20
44
1.70
60786--60831
12
3.8
12
85
0
65
39
19
19
21
1.93
66625--66667
15
2.8
15
76
16
52
60
0
0
39
0.97
70081--70129
25
2.0
25
84
11
66
55
2
2
40
1.23
72067--72123
17
3.4
17
92
0
96
28
28
19
24
1.98
73999--74044
23
2.0
23
86
0
65
41
6
19
32
1.77
74139--74847
200
3.5
198
82
6
770
30
16
14
39
1.88
79204--79237
6
5.7
6
89
0
50
20
32
2
44
1.67
80876--81140
132
2.0
133
94
5
477
38
13
12
35
1.81
81060--81341
142
2.0
142
92
1
467
28
17
14
39
1.89
81202--81508
167
1.8
167
92
0
524
28
15
15
41
1.87
83614--83676
21
3.0
21
95
0
108
15
31
11
41
1.83
85866--86308
182
2.5
180
80
7
510
28
16
13
41
1.86
96745--96786
21
1.9
23
85
9
61
73
2
19
4
1.12
98561--98594
3
11.7
3
93
6
61
29
0
0
70
0.87
98781--98825
19
2.3
19
78
14
56
40
0
4
55
1.20
111808--111934
31
4.1
31
91
0
200
28
17
18
35
1.94
115047--115080
13
2.6
13
90
0
50
11
11
0
76
1.02
116087--116143
23
2.4
23
77
13
62
14
19
22
43
1.86
119484--119588
32
3.3
32
83
1
131
36
18
15
30
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
123608--123674
30
2.2
31
83
2
82
32
25
20
20
1.97
123633--123790
32
5.0
31
76
11
101
34
19
17
28
1.94
123686--123790
32
3.3
32
86
4
151
37
17
16
29
1.91
136783--136820
2
20.0
2
89
10
62
47
0
0
52
1.00

Tables:   1

The End!