genome.fa.s4883.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004883.1 Hibiscus syriacus cultivar Beakdansim tig00011001_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  194317

Tables:   1   

This is table  1  of  1  ( 110 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5027--5076	13	3.7	13	76	10	55	46	12	16	26	1.81
6546--6607	2	31.0	2	100	0	124	50	0	0	50	1.00
7680--7712	16	2.1	16	100	0	66	36	6	12	45	1.66
7738--7980	103	2.3	102	80	3	243	35	12	11	40	1.78
9021--9053	3	11.7	3	87	12	52	33	0	0	66	0.92
9024--9053	11	2.7	11	94	0	51	33	0	0	66	0.92
11616--11655	19	2.1	19	100	0	80	40	12	12	35	1.81
20399--20439	10	4.3	9	87	9	55	80	2	17	0	0.82
20401--20439	20	2.0	20	90	10	62	82	2	15	0	0.79
21706--22210	54	9.6	54	81	6	525	33	19	25	22	1.97
21698--22210	51	9.8	51	81	7	485	32	19	25	22	1.97
21698--22166	105	4.5	105	89	4	657	33	19	25	22	1.97
22167--22375	111	1.9	111	88	2	321	30	15	23	30	1.95
22562--22594	3	11.7	3	87	12	52	33	0	0	66	0.92
22565--22594	11	2.7	11	94	0	51	33	0	0	66	0.92
30528--30599	32	2.2	32	85	9	94	18	26	30	25	1.98
30528--30599	15	4.5	16	72	11	67	18	26	30	25	1.98
30648--30725	26	3.0	26	92	0	129	24	8	24	42	1.83
32876--33086	48	4.5	48	86	1	284	36	25	15	23	1.93
33873--33935	22	2.9	22	79	11	60	39	25	19	15	1.91
33924--33990	23	2.8	24	84	4	100	31	25	26	16	1.96
33905--33990	23	3.8	23	81	6	95	33	25	25	15	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34101--34129	14	2.1	14	100	0	58	27	13	20	37	1.91
34106--34209	44	2.4	44	80	4	122	28	19	9	42	1.82
34199--34230	17	1.9	17	93	6	57	46	25	9	18	1.79
41509--41534	13	2.0	13	100	0	52	7	53	30	7	1.57
42230--42274	3	15.0	3	90	0	72	62	2	0	35	1.08
42406--43220	76	10.8	76	97	0	1510	35	21	21	21	1.96
42406--43220	151	5.4	152	97	0	1510	35	21	21	21	1.96
42406--43220	227	3.6	227	97	0	1515	35	21	21	21	1.96
43152--43265	45	2.5	45	89	2	174	32	22	22	21	1.98
43214--43549	88	4.0	88	90	7	561	34	20	19	24	1.96
44249--44303	22	2.5	22	90	0	92	38	14	12	34	1.84
44680--44814	54	2.6	50	85	4	162	24	22	14	38	1.91
47011--47227	114	1.9	114	91	0	353	29	21	15	32	1.95
50766--50795	2	15.0	2	100	0	60	50	0	0	50	1.00
56503--56528	13	2.0	13	100	0	52	7	53	30	7	1.57
57234--57272	3	13.0	3	100	0	78	66	0	0	33	0.92
60107--60175	23	3.0	23	76	0	75	20	24	24	30	1.99
60894--60987	42	2.4	38	76	13	98	48	20	9	21	1.77
63991--64015	13	1.9	13	100	0	50	52	0	32	16	1.44
64187--64258	29	2.4	31	81	6	94	55	13	9	20	1.67
64410--64469	31	1.9	31	86	6	86	53	13	11	21	1.71
70590--70701	33	3.4	32	90	2	161	31	8	15	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73779--73845	31	2.2	30	87	10	100	37	14	16	31	1.89
80379--80440	25	2.5	24	82	12	72	59	6	3	30	1.38
80379--80425	25	1.9	24	91	4	76	57	4	4	34	1.38
89505--89544	20	2.0	21	85	5	55	50	2	5	42	1.37
93777--93816	14	2.8	15	85	7	57	27	7	25	40	1.82
93836--93860	13	1.9	13	100	0	50	44	16	16	24	1.86
93872--93902	4	7.8	4	100	0	62	25	0	0	74	0.82
94067--94095	11	2.5	12	94	5	51	62	0	0	37	0.96
94499--94545	15	3.2	14	80	14	51	51	0	6	42	1.27
97136--97216	28	2.7	30	81	7	94	27	7	11	54	1.62
97223--97265	18	2.4	18	85	11	61	25	6	4	62	1.40
97260--97327	29	2.3	28	82	12	75	27	5	7	58	1.48
98584--98653	33	2.2	33	84	5	90	44	14	8	32	1.75
100972--101044	38	1.9	38	83	8	96	28	15	13	42	1.85
103274--103306	3	11.7	3	87	12	52	63	0	0	36	0.95
103276--103318	8	5.2	8	86	5	59	58	0	0	41	0.98
103274--103318	11	4.1	11	86	11	56	57	0	0	42	0.98
103274--103317	14	3.1	14	81	12	54	59	0	0	40	0.98
103274--103306	17	1.9	17	100	0	66	63	0	0	36	0.95
103584--103737	43	3.5	43	71	10	141	23	22	19	34	1.97
103533--103735	89	2.3	89	87	5	288	23	20	18	36	1.95
111434--111521	45	1.9	46	90	2	142	28	19	25	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111541--111579	20	2.0	20	89	0	60	20	15	33	30	1.94
111906--111945	19	2.0	20	85	9	55	25	37	0	37	1.56
114179--114280	44	2.3	44	81	8	127	30	21	24	23	1.99
118112--118151	21	1.9	21	85	10	55	35	10	2	52	1.48
125527--125586	7	8.6	7	81	0	66	21	0	30	48	1.51
125533--125587	28	2.0	28	92	0	92	21	0	30	47	1.51
125630--125692	11	5.9	11	69	14	51	38	1	3	57	1.24
130484--130518	15	2.3	15	100	0	70	54	5	14	25	1.62
130806--130914	36	3.2	36	69	21	97	42	17	20	20	1.90
130809--130958	67	2.2	67	86	2	212	41	18	18	22	1.90
130891--130968	27	2.7	29	82	13	90	38	20	19	21	1.94
132419--132448	13	2.3	13	100	0	60	46	23	0	30	1.52
133587--133629	21	2.0	21	81	0	50	44	0	9	46	1.35
135633--135685	24	2.2	24	83	6	63	28	20	22	28	1.99
136719--136750	2	16.0	2	93	0	55	46	0	3	50	1.17
136870--136896	2	13.5	2	100	0	54	51	0	0	48	1.00
136893--136923	16	1.9	16	93	0	53	67	0	6	25	1.14
137419--137481	32	2.0	32	100	0	126	30	22	12	34	1.91
137934--138162	109	2.1	109	95	0	413	20	20	27	31	1.97
139058--139103	20	2.3	20	81	7	58	0	13	6	80	0.89
144116--144140	7	3.6	7	100	0	50	12	12	0	76	1.04
144146--144214	3	23.3	3	80	2	59	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144149--144214	15	4.5	15	77	9	73	45	0	0	54	0.99
144611--144666	21	2.8	21	91	5	89	55	10	33	0	1.35
144607--144648	6	7.5	6	84	15	63	54	14	30	0	1.40
145634--145680	14	3.5	13	80	13	51	40	2	2	55	1.24
157341--157385	16	2.8	16	83	10	56	28	8	6	55	1.56
158134--158893	83	9.2	83	96	0	1376	27	13	21	37	1.91
159675--160128	113	4.0	113	91	2	723	35	16	19	28	1.93
160414--160488	3	25.7	3	78	10	75	38	0	0	61	0.96
160885--160940	21	2.8	21	89	5	80	55	8	33	1	1.42
160881--160922	6	7.5	6	79	15	54	54	11	30	2	1.49
161898--161944	14	3.5	13	80	13	51	40	2	2	55	1.24
165419--165443	13	1.9	13	100	0	50	24	36	32	8	1.84
165420--165461	22	1.9	22	90	0	66	26	35	30	7	1.83
165472--165507	13	2.8	13	86	0	54	22	36	27	13	1.92
165419--165505	35	2.5	35	81	3	95	25	32	29	12	1.93
165533--165577	14	3.2	14	87	0	63	15	40	33	11	1.83
165553--165596	19	2.3	19	92	0	70	25	40	29	4	1.75
166897--166931	18	1.9	18	88	0	52	54	0	17	28	1.43
171356--171389	10	3.5	10	88	4	52	79	0	2	17	0.86
171747--171783	13	2.8	13	95	0	65	10	13	45	29	1.77
173323--173394	35	2.1	35	97	0	135	27	22	11	38	1.88
188773--188821	24	2.1	23	84	3	62	61	4	0	34	1.15

Tables:   1

The End!