genome.fa.s4884.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004884.1 Hibiscus syriacus cultivar Beakdansim tig00011002_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71526

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8880--8910	13	2.3	14	94	5	55	25	0	0	74	0.82
8915--9007	9	9.1	11	76	19	62	58	0	0	41	0.98
8927--9007	3	27.0	3	89	0	117	60	0	0	39	0.97
13540--13575	6	6.0	6	96	0	63	19	63	16	0	1.30
14067--14099	6	5.5	6	100	0	66	0	15	51	33	1.43
20097--20135	3	12.7	3	89	10	53	30	0	0	69	0.89
20098--20131	11	3.1	11	91	8	52	32	0	0	67	0.91
20097--20141	14	3.2	14	90	6	65	28	0	0	71	0.87
20140--20205	3	22.0	3	82	11	82	60	0	0	39	0.97
20478--21428	336	2.8	334	89	3	1353	28	18	14	37	1.91
20478--21428	223	4.3	226	89	2	1318	28	18	14	37	1.91
20478--21428	113	8.5	113	92	3	1338	28	18	14	37	1.91
21867--21940	22	3.4	22	90	0	112	36	14	13	35	1.86
24606--25147	83	6.6	83	98	0	959	37	22	13	26	1.91
24606--25147	248	2.2	245	94	1	951	37	22	13	26	1.91
24606--25147	165	3.3	166	96	1	959	37	22	13	26	1.91
34169--34234	3	22.0	3	82	11	82	60	0	0	39	0.97
44080--44131	24	2.2	24	89	0	77	38	23	19	19	1.93
49442--49676	29	7.9	29	67	19	105	31	22	16	29	1.96
49282--50357	123	8.8	123	85	2	1341	30	20	16	32	1.95
49396--50568	67	19.0	67	69	18	699	30	20	16	31	1.95
49453--50547	56	18.0	56	68	16	444	31	20	16	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49282--50568	246	5.2	245	82	6	1359	30	20	16	32	1.95
49822--49911	29	3.2	29	77	6	112	31	21	16	31	1.95
49840--49921	27	2.9	28	79	15	98	31	15	17	35	1.91
49417--50568	190	6.2	190	72	14	877	30	20	16	31	1.95
50305--50540	123	1.9	123	85	3	323	31	19	17	32	1.95
50401--50482	27	3.0	27	77	13	94	34	14	15	35	1.89
50388--50704	164	2.0	161	82	3	384	29	18	17	34	1.94
51246--51277	3	10.7	3	100	0	64	34	0	0	65	0.93
58139--58172	12	2.8	12	90	4	50	35	2	2	58	1.28
61394--61445	3	17.7	3	92	4	88	34	1	0	63	1.06
62918--62999	31	2.6	32	82	5	96	36	13	18	31	1.89
62941--63000	32	1.9	30	90	6	93	33	10	21	35	1.87
63092--63391	34	8.9	34	90	1	453	35	20	9	35	1.84
63089--63391	134	2.2	135	89	1	464	35	20	8	34	1.84
63705--63786	33	2.5	33	81	0	101	32	14	13	39	1.85
64166--64229	32	2.0	31	96	3	119	21	32	18	26	1.97
64226--64459	43	5.4	43	74	11	192	26	35	17	21	1.95
64226--64644	46	9.7	45	70	15	240	25	33	17	23	1.96
64226--64511	89	3.3	88	82	7	350	25	32	17	23	1.96
64197--64713	83	6.1	83	71	15	349	25	32	17	23	1.97
64315--64774	127	3.6	127	82	4	538	25	32	18	23	1.97
64197--64511	172	1.8	172	87	0	468	25	32	17	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64742--64844	40	2.6	40	71	9	93	24	31	19	25	1.98
64759--64892	40	3.3	40	74	12	112	23	31	18	26	1.98
65038--65074	3	12.7	3	83	16	51	37	0	0	62	0.96
65037--65074	11	3.5	11	83	16	53	39	0	0	60	0.97
65038--65074	14	2.6	14	95	4	65	37	0	0	62	0.96

Tables:   1

The End!