Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004886.1 Hibiscus syriacus cultivar Beakdansim tig00011004_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92745

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1176--1219
23
1.9
23
86
9
63
18
25
27
29
1.98
5170--5196
4
6.8
4
100
0
54
51
22
0
25
1.48
6439--6474
2
18.5
2
94
5
65
52
0
47
0
1.00
15769--15843
35
2.1
35
85
0
105
32
12
6
49
1.66
21822--21859
14
2.5
15
91
8
60
21
18
0
60
1.36
24465--24504
2
20.0
2
100
0
80
50
0
0
50
1.00
26470--26514
7
6.1
7
80
10
54
80
2
13
4
0.97
26470--26545
15
4.9
15
73
17
66
75
2
15
6
1.13
26472--26513
22
1.9
22
90
9
68
80
2
11
4
0.95
26494--26532
17
2.2
18
86
4
53
79
2
12
5
1.00
26472--26524
22
2.4
22
81
15
65
79
3
11
5
1.03
38764--39026
115
2.3
116
78
7
293
36
14
21
26
1.92
39371--39416
3
15.3
3
95
0
83
34
2
0
63
1.07
50806--50835
10
3.0
10
95
0
51
3
10
10
76
1.12
50957--51037
40
2.0
40
95
0
144
22
11
13
53
1.71
51788--51814
13
2.1
13
100
0
54
37
14
40
7
1.74
51933--51980
23
2.1
23
88
0
69
35
12
18
33
1.89
52707--52743
18
2.1
18
89
0
56
51
10
5
32
1.60
52947--53011
23
2.8
23
90
0
94
38
18
7
35
1.80
53365--53418
23
2.5
20
75
18
54
42
18
1
37
1.61
53380--53442
23
2.7
23
90
0
90
38
19
6
36
1.77
53100--53890
393
2.0
395
98
0
1550
39
13
8
38
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53763--53814
23
2.3
22
90
6
77
44
19
1
34
1.62
53773--53835
23
2.7
23
90
0
90
38
19
6
36
1.77
56389--57427
184
5.7
184
98
0
1972
34
15
14
35
1.89
58894--58938
3
15.0
3
85
0
63
26
33
2
37
1.69
58898--58974
12
6.4
12
84
0
73
20
35
7
36
1.82
58928--58974
24
2.0
24
95
0
85
17
36
10
36
1.84
58898--58977
6
13.3
6
78
0
61
20
35
7
37
1.81
60433--61655
199
6.1
199
96
0
2270
32
15
14
37
1.88
60433--61655
399
3.1
399
97
0
2308
32
15
14
37
1.88
61737--61781
19
2.4
19
92
0
72
57
8
2
31
1.41
63566--63631
33
2.0
33
87
0
96
24
45
1
28
1.62
65734--65786
24
2.2
24
83
6
63
26
7
13
52
1.66
65926--65967
19
2.3
18
88
8
59
21
16
9
52
1.72
73224--73283
30
2.0
29
83
3
75
41
8
16
33
1.78
73231--73304
30
2.5
31
82
8
82
44
9
17
28
1.80
74211--74279
31
2.2
32
80
14
92
34
7
21
36
1.81
75311--75343
14
2.4
14
94
0
57
42
6
12
39
1.67
75565--75627
18
3.6
18
68
12
58
23
25
26
23
2.00
75557--75648
35
2.6
35
94
0
166
25
22
28
23
2.00
75583--75644
17
3.6
17
66
12
54
20
20
30
27
1.98
77765--77791
2
13.5
2
100
0
54
51
0
0
48
1.00
79547--79580
8
4.2
8
84
0
50
38
5
0
55
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79848--80004
55
2.9
54
83
5
185
24
24
20
30
1.98
79911--80499
55
10.7
55
85
4
735
27
25
15
31
1.96
79998--80499
219
2.3
220
88
4
744
28
26
14
31
1.95
81499--81557
8
7.5
8
83
16
63
13
8
0
77
0.97
81510--81551
15
2.7
16
88
7
68
14
4
0
80
0.86
81500--81557
15
3.7
15
80
15
64
13
8
0
77
0.98
85052--85079
8
3.5
8
100
0
56
50
10
0
39
1.37

Tables:   1

The End!