genome.fa.s4887.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004887.1 Hibiscus syriacus cultivar Beakdansim tig00011005_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69022

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6039--6083	22	2.1	22	88	12	67	66	4	0	28	1.11
7388--7523	9	15.3	9	77	6	125	61	0	3	33	1.19
7388--7523	6	23.0	6	80	5	125	61	0	3	33	1.19
7891--8574	122	5.7	123	85	5	859	26	19	14	39	1.91
7891--8574	245	2.9	242	86	5	912	26	19	14	39	1.91
8253--8594	112	3.0	109	79	8	326	27	19	15	37	1.92
8988--9129	22	6.6	22	87	4	177	39	11	14	33	1.83
23113--23210	3	33.7	3	82	10	114	61	0	1	37	1.03
25357--25449	17	5.2	17	77	19	59	49	3	2	45	1.30
25386--25444	18	3.3	18	79	11	68	45	5	1	47	1.34
25427--25493	27	2.6	24	78	17	64	44	5	7	41	1.57
25405--25505	12	7.3	13	70	21	64	46	5	5	41	1.52
25491--25678	76	2.5	75	82	8	213	47	1	6	44	1.38
26003--26082	7	11.4	7	82	0	88	45	36	2	16	1.61
26171--26224	18	3.0	18	89	7	83	46	5	9	38	1.59
26268--26320	21	2.5	21	87	0	79	39	7	5	47	1.56
26471--26649	6	28.3	6	70	20	75	50	0	2	47	1.13
26470--26717	27	9.0	27	68	19	97	50	0	1	47	1.14
26469--26692	44	5.1	42	72	20	126	49	0	1	48	1.15
26473--26706	10	24.8	9	64	30	50	49	0	1	48	1.14
26471--26707	57	4.4	52	73	18	168	49	0	1	48	1.14
26469--26667	15	14.3	14	66	25	59	48	0	2	48	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26475--26715	109	2.2	110	79	11	275	50	0	1	47	1.14
27402--27430	11	2.6	11	100	0	58	41	44	6	6	1.58
27448--27489	19	2.2	19	86	0	57	45	38	4	11	1.62
27790--27994	101	2.1	99	91	3	331	20	8	19	51	1.72
27991--28061	31	2.3	30	90	2	115	14	8	23	53	1.68
30311--30335	11	2.3	11	100	0	50	32	12	0	56	1.36
31130--31179	23	2.1	24	92	3	84	48	6	0	46	1.27
31426--31456	16	1.9	16	93	0	53	32	19	19	29	1.96
31450--31502	16	3.3	16	86	0	79	39	9	26	24	1.86
50717--50747	2	15.5	2	93	0	53	45	0	3	51	1.17
54564--54621	27	2.1	27	100	0	116	39	18	12	29	1.87
55296--55363	2	34.0	2	100	0	136	0	50	0	50	1.00
61298--61349	20	2.6	20	93	0	86	26	28	19	25	1.98
61867--61933	19	3.5	19	85	2	89	47	25	16	10	1.78
61929--62113	19	10.1	19	76	14	165	11	22	22	44	1.84
61929--62113	33	5.1	38	78	14	158	11	22	22	44	1.84
62056--62113	20	2.9	20	80	10	64	13	24	18	43	1.87
64955--64993	19	2.1	18	85	4	51	48	20	17	12	1.80
65483--65535	20	2.7	20	93	0	88	24	18	28	28	1.98
65503--65638	41	3.3	43	80	9	133	21	19	19	38	1.93
65566--65658	20	4.5	21	78	4	100	18	23	17	40	1.90
65566--65658	41	2.3	41	96	0	168	18	23	17	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66635--66822	85	2.2	87	85	4	258	34	21	19	24	1.96

Tables:   1

The End!