genome.fa.s4889.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004889.1 Hibiscus syriacus cultivar Beakdansim tig00011008_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67073

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5428--5578	20	7.6	20	69	14	89	33	24	13	29	1.93
6470--6523	24	2.2	24	96	0	99	20	16	20	42	1.89
9085--9134	20	2.5	20	90	0	82	44	24	18	14	1.86
9651--9701	24	2.1	24	88	0	75	33	3	15	47	1.64
10011--10097	39	2.2	39	93	4	149	48	18	14	18	1.82
10271--10313	20	2.2	20	95	0	77	44	25	16	13	1.85
11964--12058	21	4.6	21	74	11	88	24	17	34	23	1.96
11964--12058	41	2.3	41	80	8	111	24	17	34	23	1.96
14211--14248	20	1.9	20	94	0	67	50	21	18	10	1.76
14457--14504	14	3.4	14	72	11	53	68	2	8	20	1.26
14453--14510	28	2.1	28	93	0	107	70	3	6	18	1.24
14757--14800	20	2.2	20	87	0	61	22	18	18	40	1.91
16639--16679	6	7.2	6	86	8	59	17	31	17	34	1.93
17812--17872	22	2.7	23	78	16	58	68	9	3	18	1.31
18154--18181	2	14.0	2	100	0	56	50	0	0	50	1.00
19944--20007	13	4.9	13	72	10	51	35	1	1	60	1.15
20483--20544	27	2.4	24	75	17	61	19	24	9	46	1.79
29155--29292	64	2.2	64	82	2	161	27	17	26	28	1.98
29580--30204	215	2.9	215	89	3	924	51	8	11	29	1.66
30227--30290	33	2.0	32	87	3	92	35	7	6	50	1.57
30335--30449	18	5.9	18	75	18	97	42	7	6	42	1.60
30332--30454	38	3.1	39	79	15	153	43	7	6	43	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30420--30549	33	4.5	30	75	21	111	42	7	7	42	1.62
30415--30544	51	2.6	52	85	9	155	42	8	6	42	1.62
30459--30568	15	6.4	18	66	26	53	39	8	6	46	1.59
30447--30566	51	2.4	51	94	0	204	41	8	5	44	1.58
30529--30587	20	3.0	20	82	5	66	44	6	3	45	1.47
30503--30574	29	2.5	28	80	13	74	40	8	5	45	1.57
30650--30862	33	6.5	33	76	14	228	43	7	6	42	1.59
30731--30788	17	3.5	17	69	21	59	41	5	6	46	1.53
30674--30873	18	11.1	18	68	14	126	44	8	6	41	1.60
30747--30861	58	2.0	58	96	0	212	42	6	7	42	1.60
30780--30828	25	2.0	25	87	0	71	42	8	8	40	1.64
30688--30862	91	1.9	94	89	4	275	43	8	6	41	1.61
30799--30897	51	1.9	51	80	8	112	46	6	5	42	1.50
33924--33977	20	2.7	20	85	0	63	11	12	16	59	1.61
35909--35949	2	20.5	2	94	0	64	43	0	4	51	1.23
41486--41529	21	2.2	20	83	4	52	59	4	4	31	1.38
60918--60962	23	2.0	23	100	0	90	53	11	13	22	1.71

Tables:   1

The End!