genome.fa.s489.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000489.1 Hibiscus syriacus cultivar Beakdansim tig00000933_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  167646

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2811--2838	2	14.0	2	100	0	56	50	0	0	50	1.00
10835--10880	23	2.0	23	83	8	58	39	6	6	47	1.55
12488--12538	21	2.4	21	80	9	59	80	3	15	0	0.86
12488--12543	8	6.9	8	78	10	51	80	3	16	0	0.85
15329--15385	23	2.4	23	77	13	62	36	7	7	49	1.57
17330--17386	27	2.2	26	83	3	69	22	15	0	61	1.34
17622--17669	18	2.7	18	86	0	69	70	2	14	12	1.25
22282--22336	24	2.3	24	75	6	58	36	9	18	36	1.82
24995--25038	6	7.2	6	82	12	54	79	2	18	0	0.83
26284--26338	24	2.3	24	75	6	58	34	9	20	36	1.84
33651--33741	32	2.9	32	83	6	107	35	13	18	32	1.90
35102--35146	19	2.4	19	88	0	72	26	11	31	31	1.91
41144--41184	22	1.9	21	85	5	55	41	34	2	21	1.67
41317--41357	8	5.2	8	80	13	50	75	2	21	0	0.92
47070--47114	19	2.4	19	100	0	90	24	13	33	28	1.93
53163--53203	22	1.9	21	90	5	64	41	36	2	19	1.65
55502--55566	3	21.3	3	84	3	85	38	1	0	60	1.07
56937--57274	128	2.6	131	78	10	339	37	4	9	48	1.57
59845--59929	42	2.0	43	88	2	127	31	8	21	38	1.83
61588--61618	15	2.1	15	93	0	53	61	0	35	3	1.12
63029--63060	15	2.1	16	88	11	50	65	6	21	6	1.38
63034--63095	15	4.1	16	76	15	60	72	3	19	4	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64585--64757	75	2.3	75	85	3	224	33	12	23	30	1.92
65631--65783	54	2.8	53	83	2	189	40	12	18	28	1.87
66123--66203	22	3.7	23	88	6	114	35	13	12	38	1.82
69721--69766	22	2.0	22	83	12	56	52	13	2	32	1.52
74233--74278	22	2.0	22	83	12	56	52	13	2	32	1.52
77738--77840	43	2.3	47	83	14	128	50	13	1	33	1.53
79496--79525	14	2.1	14	100	0	60	20	6	26	46	1.75
81888--81929	11	3.8	11	93	0	66	66	4	9	19	1.38
81892--81943	11	4.8	10	90	4	50	69	3	9	17	1.31
81892--81940	22	2.2	22	85	7	64	67	4	10	18	1.36
82372--82492	47	2.5	47	95	4	215	50	12	1	35	1.50
91602--91652	23	2.3	23	86	6	79	17	41	21	19	1.91
109823--109866	22	2.0	23	90	4	72	79	11	9	0	0.93
109823--109873	22	2.2	23	86	6	68	76	13	9	0	1.02
117365--117417	24	2.3	24	83	6	65	7	16	15	60	1.57
124697--124765	19	3.6	19	90	2	102	34	11	4	49	1.59
129900--129973	17	4.4	17	77	6	78	39	8	14	37	1.76
129893--129960	34	2.0	34	85	5	93	38	8	11	41	1.73
129891--129989	51	1.9	51	83	0	126	39	8	14	38	1.75
134707--134863	11	13.2	11	72	23	115	29	3	35	31	1.74
134690--134866	36	4.9	36	94	0	293	29	3	35	31	1.76
134690--134863	23	7.3	24	72	22	129	29	3	35	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141312--141350	19	2.1	19	85	9	53	35	17	28	17	1.94
144679--144711	13	2.5	13	90	9	50	78	3	15	3	0.99
145793--145833	16	2.6	16	100	0	82	51	0	29	19	1.47
149338--149430	49	1.9	48	82	4	116	20	20	25	33	1.97
155038--155080	23	1.9	21	81	13	50	32	18	11	37	1.87
157727--157783	26	2.2	25	78	9	62	61	15	14	8	1.56

Tables:   1

The End!