genome.fa.s4891.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004891.1 Hibiscus syriacus cultivar Beakdansim tig00011010_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87039

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3015--3201	38	5.1	36	71	11	112	34	8	20	36	1.83
2927--3147	67	3.2	69	76	13	195	34	10	22	32	1.89
3091--3266	38	4.7	37	77	6	149	38	9	19	32	1.84
3337--3469	60	2.2	61	82	4	153	45	7	22	24	1.78
3712--3757	21	2.2	21	92	0	74	65	0	10	23	1.24
4125--4176	19	2.6	21	90	6	81	46	5	13	34	1.67
5055--5114	30	2.0	31	83	3	77	55	10	6	28	1.58
7837--7885	22	2.2	22	85	7	64	63	0	12	24	1.29
8298--8348	21	2.5	21	90	6	79	47	5	11	35	1.65
9236--9295	30	2.0	31	86	3	86	55	8	8	28	1.59
10986--11385	194	2.1	193	81	2	464	39	12	11	36	1.79
12626--12675	20	2.5	20	83	3	55	66	0	4	30	1.10
13506--13551	22	2.1	22	100	0	92	21	17	8	52	1.71
18447--18478	2	16.0	2	100	0	64	50	0	0	50	1.00
22041--22107	22	3.0	22	71	4	62	38	11	17	31	1.87
21989--22107	45	2.6	45	85	0	139	36	10	19	32	1.87
22187--22273	23	3.8	23	84	3	95	16	21	25	36	1.94
23699--23744	24	1.9	24	100	0	92	47	19	13	19	1.81
31141--31234	22	4.3	22	87	6	129	24	14	26	34	1.94
31141--31234	43	2.1	44	86	7	129	24	14	26	34	1.94
32205--32237	16	2.1	16	94	0	57	57	3	6	33	1.38
32324--32387	32	2.0	32	100	0	128	50	12	12	25	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33314--33377	27	2.4	27	100	0	128	32	9	10	46	1.71
34256--34304	20	2.5	20	93	0	80	44	22	12	20	1.84
34317--34366	26	1.9	26	83	0	64	32	14	14	40	1.85
38906--39084	40	4.4	40	73	8	130	35	12	21	30	1.91
38905--39075	80	2.1	81	79	5	177	34	12	22	30	1.91
38929--39056	20	6.4	21	70	15	74	36	12	21	28	1.90
39167--39212	20	2.3	20	92	0	74	30	10	23	34	1.89
39323--39369	2	23.5	2	100	0	94	48	0	0	51	1.00
45301--45333	16	2.1	16	100	0	66	24	24	12	39	1.89
45404--45499	29	3.3	30	75	13	76	51	0	2	46	1.12
45513--45592	22	3.8	20	80	16	83	37	7	2	52	1.43
45501--45581	35	2.3	36	93	2	137	37	7	1	54	1.37
46341--46374	17	2.0	17	94	0	59	17	50	17	14	1.79
48788--48906	24	5.0	24	92	0	193	24	15	20	40	1.90
49699--49785	14	5.9	15	72	22	60	33	11	1	54	1.44
49702--49785	7	11.6	7	69	25	50	33	11	1	53	1.45
49813--49844	13	2.5	13	100	0	64	59	0	15	25	1.36
51527--51568	22	1.9	22	85	9	59	47	16	4	30	1.67
51689--51856	2	87.5	2	79	8	170	44	48	6	1	1.36
51708--51856	17	8.9	17	78	8	148	45	48	4	1	1.31
51873--51914	22	1.9	22	85	9	59	47	16	4	30	1.67
52107--52146	17	2.5	16	88	8	55	42	12	7	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52146--52231	7	12.3	7	81	0	64	20	0	27	51	1.48
52151--52231	14	5.8	14	75	5	74	19	0	28	51	1.47
52146--52231	21	4.1	21	76	5	75	20	0	27	51	1.48
52305--52351	11	4.5	11	82	15	64	40	0	8	51	1.33
52314--52356	17	2.4	17	88	11	59	41	2	6	48	1.43
52716--52769	21	2.6	21	78	0	63	22	0	27	50	1.50
52872--52941	2	36.0	2	85	5	90	44	1	4	50	1.30
53113--53156	2	22.5	2	95	4	81	50	0	0	50	1.00
53366--53421	19	2.8	21	84	15	91	25	25	0	50	1.50
53366--53421	20	2.8	20	86	13	89	25	25	0	50	1.50
53542--53791	2	126.0	2	64	21	64	43	4	3	48	1.39
53544--53791	103	2.4	102	77	11	249	43	4	3	48	1.39
53618--53786	41	3.8	42	76	18	157	43	3	4	47	1.41
53618--53766	13	11.4	13	77	12	128	43	3	5	47	1.42
53758--53792	17	2.1	16	89	5	52	42	2	0	54	1.15
53618--53766	28	5.2	26	75	16	73	43	3	5	47	1.42
53683--53791	13	9.5	11	70	25	52	44	1	3	50	1.30
57696--57755	30	2.0	31	90	3	95	48	8	3	40	1.50
66589--68324	868	2.0	868	100	0	3472	27	15	19	36	1.93
70349--70453	31	3.5	31	74	12	119	39	5	23	31	1.78
70345--70471	60	2.1	60	100	0	254	40	4	21	33	1.74
74013--74216	55	3.7	55	86	1	302	37	10	17	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74242--74525	79	3.5	82	91	3	468	35	12	20	31	1.90
74656--74704	13	3.8	13	86	0	71	30	18	16	34	1.93
74651--74703	26	2.0	26	92	0	88	33	18	13	33	1.90
78973--79011	19	2.0	20	85	5	53	38	0	38	23	1.55
79345--79807	82	5.7	81	87	2	624	36	9	20	33	1.85
82675--83041	55	6.7	55	88	1	540	36	10	19	33	1.86
83148--84052	82	11.1	82	87	1	1192	36	11	21	31	1.89

Tables:   1

The End!