Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004892.1 Hibiscus syriacus cultivar Beakdansim tig00011011_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84477

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1464--1500
18
2.1
18
89
0
56
54
0
18
27
1.44
2076--2124
25
1.9
26
87
4
73
69
6
10
14
1.35
4833--4864
14
2.4
13
94
5
55
78
0
9
12
0.97
4833--4879
15
3.3
15
85
11
55
74
2
10
12
1.16
8603--8691
26
3.4
26
90
0
151
25
30
20
23
1.98
9386--9444
15
3.8
16
82
17
72
47
0
1
50
1.11
9408--9443
2
19.0
2
88
11
58
50
0
0
50
1.00
9386--9440
17
3.4
17
79
20
64
49
0
1
49
1.11
14189--14243
20
2.6
22
88
8
87
23
14
16
45
1.84
14189--14252
20
3.0
21
82
8
85
23
17
14
45
1.84
14988--15164
95
1.9
95
89
0
273
37
17
16
28
1.92
16225--16298
35
2.1
36
92
2
123
37
16
12
33
1.85
21752--21822
31
2.3
31
97
2
133
25
14
16
43
1.86
24040--24092
3
17.7
3
100
0
106
67
0
0
32
0.91
24919--24953
16
2.2
16
90
5
54
37
2
0
60
1.12
24987--25020
16
2.1
17
88
5
52
38
0
0
61
0.96
25112--25158
17
2.9
16
81
18
53
34
4
0
61
1.15
25156--25230
40
2.0
37
84
10
98
41
6
5
46
1.53
25218--25271
21
2.5
21
80
11
65
46
1
1
50
1.23
25209--25268
22
2.8
20
80
12
66
43
1
1
53
1.20
25509--25574
20
3.2
20
80
8
71
27
1
0
71
0.95
28018--28047
2
15.0
2
92
0
51
46
0
3
50
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29490--29537
16
3.2
16
83
11
59
22
14
14
47
1.81
32054--32099
21
2.2
20
84
3
56
34
2
0
63
1.07
32526--32575
2
25.0
2
100
0
100
50
0
0
50
1.00
33872--33960
32
2.8
31
73
11
90
37
28
14
20
1.92
34805--34848
20
2.1
21
87
4
63
31
4
4
59
1.38
40868--40929
9
6.9
9
87
5
90
56
3
1
38
1.25
41217--42023
113
6.9
116
86
7
812
27
18
14
39
1.90
41710--42023
112
2.8
113
92
3
508
27
19
14
38
1.91
42033--42290
76
3.4
76
96
1
446
33
21
20
24
1.97
42962--43038
22
3.5
22
94
0
136
41
12
11
33
1.80
47106--47168
32
2.0
32
96
0
117
22
17
17
42
1.89
47779--47848
1
70.0
1
71
0
50
0
12
1
85
0.66
47773--47847
6
12.8
6
82
16
95
0
14
1
84
0.70
47784--47863
18
4.6
17
79
13
74
0
17
1
81
0.76
47791--47863
30
2.5
30
77
22
50
0
16
1
82
0.75
48158--48185
2
14.0
2
100
0
56
50
0
0
50
1.00
49822--49864
21
2.0
21
86
0
59
60
9
11
18
1.57
53832--53905
3
25.7
3
75
8
64
59
1
1
37
1.14
55102--55175
36
2.0
38
82
12
93
47
5
1
45
1.34
56142--56818
179
3.7
177
79
7
682
42
8
14
34
1.76
56142--56920
366
2.1
360
80
8
853
42
8
14
34
1.77
56899--56969
37
1.9
37
82
0
88
38
16
19
25
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57873--58032
54
3.1
54
59
20
124
46
8
11
33
1.71
57821--58034
100
2.1
100
100
0
428
44
8
9
36
1.69
67951--67975
6
4.2
6
100
0
50
0
16
48
36
1.46
68440--68482
20
2.2
19
87
4
59
32
37
0
30
1.58
69740--69983
101
2.4
100
75
11
246
40
13
10
35
1.79
69820--70160
177
1.9
178
86
4
492
39
13
11
36
1.81
70023--70416
203
2.0
200
81
5
472
40
13
10
35
1.78
76696--76730
15
2.3
15
90
9
54
17
8
0
74
1.06
82976--83023
20
2.5
20
83
6
64
16
14
0
68
1.21
82960--83036
26
2.9
26
81
9
77
16
15
0
67
1.23

Tables:   1

The End!