genome.fa.s4893.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004893.1 Hibiscus syriacus cultivar Beakdansim tig00011015_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120889

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7918--7997	19	3.9	20	79	12	74	23	32	26	17	1.97
9956--10020	33	2.0	31	82	11	78	21	0	23	55	1.44
13119--13494	74	5.1	74	89	3	517	31	7	17	43	1.78
13119--13494	147	2.5	146	87	4	531	31	7	17	43	1.78
14020--14215	45	4.4	45	86	5	283	32	21	7	38	1.81
14012--14215	89	2.3	89	94	4	349	32	22	6	38	1.81
18206--18265	10	5.9	9	80	19	57	0	15	5	80	0.88
18206--18265	21	2.8	20	76	11	57	0	15	5	80	0.88
20981--21179	45	4.5	45	89	1	321	31	22	7	38	1.82
20981--21179	89	2.2	89	93	0	344	31	22	7	38	1.82
23501--23817	44	7.2	44	80	4	320	29	21	15	32	1.95
23676--23748	22	3.3	22	67	9	67	32	15	19	32	1.92
23503--23811	132	2.4	130	84	3	397	29	21	15	33	1.94
23908--23993	36	2.4	36	90	0	127	30	13	8	47	1.72
28947--29002	20	3.0	20	87	10	75	37	0	60	1	1.07
28961--29010	15	3.3	15	91	5	82	38	0	62	0	0.96
28961--29012	16	3.4	16	82	17	74	38	0	61	0	0.96
29574--29621	23	2.1	22	85	11	62	52	4	2	41	1.32
29574--29621	22	2.1	21	82	17	53	52	4	2	41	1.32
29563--29624	21	2.9	20	76	19	63	46	3	3	46	1.35
29950--30133	92	2.0	92	100	0	368	29	11	28	30	1.92
31179--31222	19	2.3	19	77	11	54	72	2	6	18	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31288--31313	3	8.7	3	100	0	52	69	0	0	30	0.89
31609--31678	29	2.6	26	71	18	63	62	1	7	28	1.30
32010--32121	37	3.0	37	93	0	188	33	13	12	41	1.82
32864--32894	10	3.2	10	90	9	55	19	0	0	80	0.71
32868--32904	17	2.1	18	90	5	58	16	2	0	81	0.81
32966--33023	20	2.8	21	82	10	66	37	1	0	60	1.07
33028--33059	15	2.1	15	94	0	55	12	9	0	78	0.97
33029--33082	21	2.6	20	80	13	56	14	5	5	74	1.19
33053--33131	32	2.5	31	78	15	90	21	2	6	69	1.23
33240--33269	11	2.7	11	100	0	60	26	16	0	56	1.40
46318--46379	23	2.9	21	85	7	81	20	35	25	17	1.95
46766--46816	26	2.0	26	88	11	79	56	3	3	35	1.36
49183--49233	20	2.5	20	100	0	102	19	35	25	19	1.95
51661--51704	22	2.0	22	90	0	70	22	9	36	31	1.86
53372--53421	19	2.7	17	80	17	55	80	4	14	2	0.95
53380--53421	19	2.2	19	82	0	57	80	4	14	0	0.86
54433--54639	110	1.9	110	89	0	324	37	24	17	21	1.94
56122--56151	2	15.0	2	100	0	60	50	0	0	50	1.00
56229--56352	13	9.5	13	69	18	53	21	4	2	70	1.17
56246--56277	15	2.1	15	94	0	55	12	9	0	78	0.97
56229--56353	20	6.4	18	70	19	58	21	4	2	71	1.17
56403--56465	29	2.2	29	82	5	74	17	12	1	68	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61880--61926	24	2.0	24	83	8	60	46	2	12	38	1.54
63892--63942	26	2.0	26	96	0	93	33	25	15	25	1.95
65157--65206	20	2.5	20	96	0	91	30	26	24	20	1.98
66957--67011	22	2.5	22	88	5	76	25	0	5	69	1.10
66956--67010	29	1.9	28	92	3	92	25	0	5	69	1.10
66956--67020	16	4.3	15	76	20	64	24	0	4	70	1.06
66956--67021	8	8.6	8	73	18	52	24	0	4	71	1.05
66957--67019	22	2.9	21	73	21	58	25	0	4	69	1.07
66956--67011	7	7.7	7	74	21	53	25	0	5	69	1.09
70907--71038	32	4.2	32	84	1	158	25	28	28	17	1.97
70907--71038	63	2.1	64	84	1	167	25	28	28	17	1.97
73154--73192	17	2.2	18	95	4	71	41	7	0	51	1.31
74376--74513	70	2.0	70	97	0	258	34	10	10	44	1.72
76445--76512	3	22.7	3	93	0	118	32	1	1	64	1.11
76443--76518	18	4.2	18	93	0	116	31	5	1	61	1.26
81026--81057	2	16.0	2	100	0	64	50	0	0	50	1.00
87808--87838	6	5.2	6	92	0	53	54	0	0	45	0.99
93631--93696	29	2.3	29	91	0	105	34	13	16	34	1.88
97554--97740	91	2.1	91	97	1	358	34	24	15	26	1.95
99814--99860	22	2.1	22	92	0	76	34	21	2	42	1.65
101340--101401	31	2.0	31	81	9	72	43	29	1	25	1.64
101486--101527	22	2.0	21	85	4	57	47	16	2	33	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105001--105027	5	5.4	5	100	0	54	62	0	0	37	0.95
104996--105084	15	6.1	15	75	7	58	65	0	6	28	1.18
105206--105291	38	2.2	40	89	4	131	41	8	3	46	1.50
105234--105445	37	5.9	34	74	17	121	44	8	3	42	1.52
105210--105408	107	1.8	109	80	14	241	43	9	4	43	1.54
105210--105408	35	5.5	35	75	16	149	43	9	4	43	1.54
106094--107230	84	13.7	84	77	6	1100	25	19	24	30	1.98
106094--107223	248	4.6	248	89	1	1690	25	19	24	30	1.98
111108--111160	27	2.0	27	85	7	72	71	1	5	20	1.16
111167--111205	21	1.9	21	89	5	62	79	2	10	7	1.02
112536--112624	41	2.2	41	92	4	146	42	5	2	49	1.38
112510--112813	37	8.4	34	75	16	136	44	6	3	44	1.48
112492--112739	34	6.9	34	71	21	118	44	6	4	44	1.49
112714--112814	37	2.7	37	96	0	184	49	6	1	41	1.41
116466--116500	2	17.5	2	100	0	70	51	0	0	48	1.00

Tables:   1

The End!