genome.fa.s4895.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004895.1 Hibiscus syriacus cultivar Beakdansim tig00011018_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56479

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4347--4417	3	23.7	3	88	5	99	61	0	1	36	1.05
10464--10942	182	2.6	181	89	1	733	44	13	16	26	1.84
13003--13044	21	2.0	21	86	9	59	26	21	28	23	1.99
15248--15299	24	2.2	24	80	16	65	48	0	5	46	1.26
16041--16081	21	1.9	22	85	5	57	56	7	14	21	1.63
20047--20399	128	2.8	127	80	5	365	42	11	13	32	1.81
20237--21400	199	5.8	198	86	3	1536	40	13	14	31	1.85
21695--21753	18	3.5	16	76	17	57	22	37	5	35	1.76
21728--21762	18	1.9	18	88	0	52	25	34	5	34	1.80
24327--24371	24	1.9	23	90	4	72	31	2	15	51	1.56
24331--24383	24	2.2	24	82	0	61	33	3	15	47	1.63
25823--26787	198	4.8	198	86	4	1291	39	12	14	32	1.84
26549--26587	21	1.9	20	84	5	51	33	10	10	46	1.72
30719--30753	16	2.2	16	89	0	52	71	2	0	25	1.00
35445--35486	2	21.0	2	95	0	75	52	0	0	47	1.00
36836--36860	12	2.1	12	100	0	50	76	0	8	16	1.02
39418--39444	2	13.5	2	100	0	54	48	0	0	51	1.00
40657--40920	134	2.0	134	83	1	341	30	20	17	31	1.96
40909--41739	38	21.0	45	79	12	312	40	17	17	24	1.90
40909--41128	90	2.4	90	82	4	264	41	17	16	24	1.90
41094--41769	38	17.8	38	88	2	955	39	17	18	24	1.91
42200--42724	244	2.1	252	86	6	735	35	17	15	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44050--44597	275	2.0	276	89	1	839	31	18	12	36	1.89
50533--50557	2	12.5	2	100	0	50	48	0	0	52	1.00

Tables:   1

The End!