Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004897.1 Hibiscus syriacus cultivar Beakdansim tig00011020_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57076

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1880--2539
181
3.7
184
95
3
1182
34
15
14
35
1.89
3884--3964
3
27.0
3
78
0
81
24
34
6
34
1.81
3884--3985
18
5.7
18
77
0
78
22
33
6
37
1.81
3892--3982
42
2.2
42
89
0
137
21
34
7
36
1.82
5443--7358
199
9.7
199
97
1
3506
32
15
14
37
1.88
7507--7551
19
2.4
19
92
0
72
57
8
2
31
1.41
9104--9151
15
3.3
14
78
18
53
4
43
0
52
1.20
9336--9401
33
2.0
33
87
0
96
24
45
1
28
1.62
11498--11550
24
2.2
24
83
6
63
26
7
13
52
1.66
11695--11739
19
2.3
19
76
3
54
20
17
8
53
1.70
11862--11919
19
3.0
19
82
12
73
17
15
15
51
1.76
16019--16188
72
2.4
72
85
4
227
32
27
15
24
1.95
17766--17799
12
2.9
11
91
8
50
44
0
2
52
1.16
18446--18476
16
1.9
16
93
0
53
19
6
22
51
1.69
18737--18767
3
10.0
3
93
6
53
0
35
0
64
0.94
18737--18772
13
2.8
13
91
4
56
0
38
0
61
0.96
26626--26890
42
6.2
42
76
10
229
50
4
19
26
1.65
26631--26846
83
2.6
84
76
12
228
49
4
19
26
1.66
28325--28597
133
2.1
133
100
0
546
20
20
12
46
1.83
35967--36012
2
23.0
2
100
0
92
50
0
0
50
1.00
37207--37369
40
4.1
40
94
0
290
49
3
14
32
1.61
38953--39008
21
2.7
21
75
5
60
19
7
5
67
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39058--39120
22
2.9
21
75
15
58
68
1
7
22
1.24
39133--39182
26
1.9
26
84
8
66
46
2
0
52
1.12
39220--39251
11
2.9
11
95
0
55
46
3
0
50
1.17
43325--43378
20
2.7
20
97
0
99
42
18
9
29
1.81
44546--44582
19
1.9
19
88
0
56
35
29
13
21
1.92
47830--47864
18
1.9
18
94
0
61
54
25
2
17
1.57
48035--48144
20
5.8
20
70
16
74
35
23
16
24
1.95
48043--48183
34
4.0
34
77
10
138
37
23
17
21
1.94
48077--48149
20
3.7
20
88
0
101
35
23
19
21
1.96
48037--48187
74
2.1
73
84
3
196
37
21
17
23
1.94
48188--48226
20
2.0
20
94
0
69
7
20
25
46
1.77
50085--50121
12
3.0
12
96
4
65
0
35
0
64
0.94
51374--51413
20
1.9
22
90
10
66
37
40
10
12
1.77
52553--52600
19
2.5
20
75
3
53
50
8
12
29
1.69
53369--53406
20
1.9
20
88
0
58
44
7
7
39
1.63
53734--53791
18
3.1
18
81
13
80
31
10
8
50
1.67

Tables:   1

The End!