genome.fa.s4898.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004898.1 Hibiscus syriacus cultivar Beakdansim tig00011021_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125011

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155--201	19	2.5	19	92	0	76	21	23	27	27	1.99
410--676	136	2.0	135	89	5	416	40	12	6	40	1.69
2951--3033	23	3.7	23	73	15	84	26	20	26	26	1.99
2931--3052	44	2.8	44	84	9	146	25	18	26	30	1.98
15945--16005	20	2.9	20	85	7	59	24	32	26	16	1.96
15988--16027	21	1.9	21	84	0	53	27	37	25	10	1.88
21521--21555	3	12.0	3	93	6	63	65	0	0	34	0.93
21521--21553	17	1.9	17	100	0	66	66	0	0	33	0.92
24175--24207	14	2.4	14	94	0	57	75	0	0	24	0.80
24221--24313	42	2.3	40	81	3	105	49	0	11	38	1.40
25295--25629	22	15.3	22	86	3	451	40	0	10	48	1.40
26660--26819	22	7.3	22	81	6	209	40	0	11	47	1.44
26699--26819	43	2.8	44	87	2	163	39	0	10	49	1.38
26660--26820	65	2.5	66	90	6	265	40	0	11	47	1.44
28418--28479	2	31.0	2	100	0	124	50	0	0	50	1.00
29411--29447	17	2.2	17	95	0	65	10	35	29	24	1.89
30472--30530	23	2.5	24	81	8	68	52	10	22	15	1.72
31729--31759	4	7.8	4	100	0	62	74	0	0	25	0.82
31841--31891	3	18.3	3	80	15	56	31	0	1	66	1.03
31840--31890	19	2.7	20	84	9	70	31	0	1	66	1.03
31830--31891	22	2.8	21	87	7	79	29	0	3	67	1.06
33805--33851	16	2.9	16	78	12	60	53	0	2	44	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33794--33856	16	3.8	16	75	14	56	50	0	3	46	1.17
34293--34344	13	4.2	12	83	16	54	25	1	0	73	0.94
34300--34341	16	2.6	16	82	17	52	26	0	0	73	0.83
34965--35002	18	2.1	18	85	9	51	15	10	0	73	1.09
35935--35988	14	3.8	14	81	11	56	25	14	9	50	1.73
35950--35988	15	2.7	15	88	4	53	20	15	12	51	1.76
38931--38978	2	24.0	2	100	0	96	50	0	0	50	1.00
41545--41770	114	2.0	114	91	0	371	33	15	20	30	1.94
43891--44096	54	3.9	54	80	10	228	38	15	22	24	1.92
44463--44517	22	2.5	22	90	0	92	34	12	14	38	1.84
44926--45469	113	4.8	113	93	2	893	36	14	20	28	1.92
45446--45492	24	2.0	24	95	0	85	34	10	19	36	1.86
45817--45897	3	28.3	3	73	18	57	27	1	2	69	1.09
45846--45896	19	2.7	20	84	9	70	31	0	1	66	1.03
45820--45897	22	3.5	21	84	8	84	26	1	2	69	1.09
46380--46416	18	2.1	18	94	0	65	75	8	16	0	1.02
47285--47325	20	2.0	21	85	4	57	36	2	2	58	1.24
51840--51888	25	2.0	24	88	4	71	48	14	2	34	1.55
55128--55166	20	2.0	20	89	0	60	23	25	17	33	1.96
55158--55206	20	2.5	20	86	6	64	28	10	22	38	1.87
61263--61423	69	2.3	69	81	6	173	34	23	9	32	1.88
65379--65423	10	4.4	10	86	5	63	4	11	0	84	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74381--74436	18	3.1	19	75	12	55	55	0	5	39	1.23
74942--74984	2	21.5	2	95	0	77	51	0	0	48	1.00
75619--75680	21	3.0	21	82	0	70	54	8	30	6	1.55
75854--75925	28	2.6	29	84	4	94	36	15	6	41	1.74
76227--76334	43	2.5	43	80	3	119	31	20	17	30	1.96
77002--77039	13	2.8	14	84	15	53	31	0	2	65	1.06
79258--79314	29	1.9	29	82	3	69	42	3	0	54	1.17
89807--89857	3	17.0	3	100	0	102	66	0	0	33	0.92
92452--92554	38	2.7	39	78	6	120	23	15	21	39	1.91
93235--93260	7	3.7	7	100	0	52	30	0	0	69	0.89
98845--99417	286	2.0	286	98	0	1119	32	18	15	34	1.92
101425--101471	20	2.4	20	82	10	53	4	27	2	65	1.22
107810--107844	18	1.9	18	88	0	52	34	14	31	20	1.92
109524--109619	40	2.4	40	91	0	156	31	16	12	39	1.86
111043--111080	19	2.0	20	84	5	51	50	0	13	36	1.42
111043--111081	20	2.0	20	84	0	51	51	0	12	35	1.40
111453--111524	14	5.4	14	75	12	80	15	12	16	55	1.69
111453--111500	24	2.0	24	95	0	87	14	12	14	58	1.64
111778--111838	24	2.5	24	91	0	104	14	16	14	54	1.72
111744--111820	10	7.0	10	71	18	55	11	14	18	55	1.68
111726--111859	24	5.7	23	77	8	92	11	13	17	56	1.66
115632--115748	4	28.2	4	70	13	76	20	3	5	70	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115631--115699	29	2.3	29	87	2	93	18	1	7	72	1.15
115637--115715	21	3.5	22	80	13	74	18	2	7	70	1.22
115638--115727	46	2.0	46	86	4	128	17	4	6	71	1.25
123930--123969	20	2.0	20	85	9	55	37	12	2	47	1.55

Tables:   1

The End!