Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004899.1 Hibiscus syriacus cultivar Beakdansim tig00011022_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100864
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
Found at i:6551 original size:54 final size:54
Alignment explanation
Indices: 6487--6805 Score: 471
Period size: 54 Copynumber: 5.9 Consensus size: 54
6477 TATATGTTGC
* * *
6487 ATTACTGTATCGACACTATGTGTGCAACCCACGTAATTCATAATGAGTTTCTAA
1 ATTACCGTATCGACACTATGTGTGCAACCCACGTAATTCATAATGAGTTTGTGA
*
6541 ATTACCGTATCGGCACTATGTGTGCAACCCACGTAATTCATAATGAGTTTGTGA
1 ATTACCGTATCGACACTATGTGTGCAACCCACGTAATTCATAATGAGTTTGTGA
6595 ATTACCGTATCGACACTATGTGTGCAACCCACGT-ATTCATAATGAGTTTGTGA
1 ATTACCGTATCGACACTATGTGTGCAACCCACGTAATTCATAATGAGTTTGTGA
* * *
6648 ATTAACATATC-AGCACTATGTGTGCAACCCAAGTAATTCATAATGAGTTTGTGA
1 ATTACCGTATCGA-CACTATGTGTGCAACCCACGTAATTCATAATGAGTTTGTGA
** * *
6702 ATTACCGTATCGGTACTATGTGTGTAACCCTCGTAATTCATAATGAGTTTGTGA
1 ATTACCGTATCGACACTATGTGTGCAACCCACGTAATTCATAATGAGTTTGTGA
* * * *
6756 ATTACCGTATCTACACTATGTGTGCAAAACCACGAAATTTATAATGAGTT
1 ATTACCGTATCGACACTATGTGTGC-AACCCACGTAATTCATAATGAGTT
6806 GAAATATTCA
Statistics
Matches: 238, Mismatches: 23, Indels: 7
0.89 0.09 0.03
Matches are distributed among these distances:
52 1 0.00
53 48 0.20
54 169 0.71
55 20 0.08
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.33
Consensus pattern (54 bp):
ATTACCGTATCGACACTATGTGTGCAACCCACGTAATTCATAATGAGTTTGTGA
Found at i:6674 original size:107 final size:108
Alignment explanation
Indices: 6487--6805 Score: 480
Period size: 107 Copynumber: 3.0 Consensus size: 108
6477 TATATGTTGC
* * *
6487 ATTACTGTATCGACACTATGTGTGCAACCCACGTAATTCATAATGAGTTTCTAAATTACCGTATC
1 ATTACCGTATCGACACTATGTGTGCAACCCACGTAATTCATAATGAGTTTGTGAATTACCGTATC
*
6552 GGCACTATGTGTGCAACCCACGTAATTCATAATGAGTTTGTGA
66 AGCACTATGTGTGCAACCCACGTAATTCATAATGAGTTTGTGA
* *
6595 ATTACCGTATCGACACTATGTGTGCAACCCACGT-ATTCATAATGAGTTTGTGAATTAACATATC
1 ATTACCGTATCGACACTATGTGTGCAACCCACGTAATTCATAATGAGTTTGTGAATTACCGTATC
*
6659 AGCACTATGTGTGCAACCCAAGTAATTCATAATGAGTTTGTGA
66 AGCACTATGTGTGCAACCCACGTAATTCATAATGAGTTTGTGA
** * *
6702 ATTACCGTATCGGTACTATGTGTGTAACCCTCGTAATTCATAATGAGTTTGTGAATTACCGTATC
1 ATTACCGTATCGACACTATGTGTGCAACCCACGTAATTCATAATGAGTTTGTGAATTACCGTATC
* * *
6767 TA-CACTATGTGTGCAAAACCACGAAATTTATAATGAGTT
66 -AGCACTATGTGTGC-AACCCACGTAATTCATAATGAGTT
6806 GAAATATTCA
Statistics
Matches: 191, Mismatches: 17, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
107 97 0.51
108 73 0.38
109 21 0.11
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.33
Consensus pattern (108 bp):
ATTACCGTATCGACACTATGTGTGCAACCCACGTAATTCATAATGAGTTTGTGAATTACCGTATC
AGCACTATGTGTGCAACCCACGTAATTCATAATGAGTTTGTGA
Found at i:6765 original size:161 final size:163
Alignment explanation
Indices: 6500--6805 Score: 508
Period size: 161 Copynumber: 1.9 Consensus size: 163
6490 ACTGTATCGA
*
6500 CACTATGTGTGCAACCCACGTAATTCATAATGAGTTTCTAAATTACCGTATCGGCACTATGTGTG
1 CACTATGTGTGCAACCCAAGTAATTCATAATGAGTTTCTAAATTACCGTATCGGCACTATGTGTG
*
6565 CAACCCACGTAATTCATAATGAGTTTGTGAATTACCGTATCGACACTATGTGTGC-AACCCACG-
66 CAACCCACGTAATTCATAATGAGTTTGTGAATTACCGTATCGACACTATGTGTGCAAAACCACGA
*
6628 TATTCATAATGAGTTTGTGAATTAACATATCAG
131 AATTCATAATGAGTTTGTGAATTAACATATCAG
* * *
6661 CACTATGTGTGCAACCCAAGTAATTCATAATGAGTTTGTGAATTACCGTATCGGTACTATGTGTG
1 CACTATGTGTGCAACCCAAGTAATTCATAATGAGTTTCTAAATTACCGTATCGGCACTATGTGTG
* * *
6726 TAACCCTCGTAATTCATAATGAGTTTGTGAATTACCGTATCTACACTATGTGTGCAAAACCACGA
66 CAACCCACGTAATTCATAATGAGTTTGTGAATTACCGTATCGACACTATGTGTGCAAAACCACGA
*
6791 AATTTATAATGAGTT
131 AATTCATAATGAGTT
6806 GAAATATTCA
Statistics
Matches: 133, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
161 113 0.85
162 7 0.05
163 13 0.10
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.33
Consensus pattern (163 bp):
CACTATGTGTGCAACCCAAGTAATTCATAATGAGTTTCTAAATTACCGTATCGGCACTATGTGTG
CAACCCACGTAATTCATAATGAGTTTGTGAATTACCGTATCGACACTATGTGTGCAAAACCACGA
AATTCATAATGAGTTTGTGAATTAACATATCAG
Found at i:10083 original size:9 final size:9
Alignment explanation
Indices: 10041--10081 Score: 57
Period size: 9 Copynumber: 4.4 Consensus size: 9
10031 AAAACACGTA
10041 AAAAATAAT
1 AAAAATAAT
10050 AAAAATAAT
1 AAAAATAAT
10059 AAAAATAA-
1 AAAAATAAT
10067 ACAAAATGAAT
1 A-AAAAT-AAT
10078 AAAA
1 AAAA
10082 TGTTTAAAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
8 1 0.03
9 22 0.76
10 5 0.17
11 1 0.03
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.17
Consensus pattern (9 bp):
AAAAATAAT
Found at i:10318 original size:2 final size:2
Alignment explanation
Indices: 10311--10339 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
10301 TAAAGTAAAA
10311 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10340 AATAAAAACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10375 original size:36 final size:37
Alignment explanation
Indices: 10335--10410 Score: 102
Period size: 39 Copynumber: 2.1 Consensus size: 37
10325 ATATATATAT
10335 ATATAAATAAAAAC-A-AAAATAGAATATTAAGAAAAA
1 ATATAAATAAAAACGATAAAATAGAATATTAA-AAAAA
* *
10371 ATATATATAAAAACGTATAAAATATAATATTAAAAAAA
1 ATATAAATAAAAACG-ATAAAATAGAATATTAAAAAAA
10409 AT
1 AT
10411 GTATATACAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
36 13 0.37
38 8 0.23
39 14 0.40
ACGTcount: A:0.68, C:0.03, G:0.04, T:0.25
Consensus pattern (37 bp):
ATATAAATAAAAACGATAAAATAGAATATTAAAAAAA
Found at i:10408 original size:38 final size:36
Alignment explanation
Indices: 10335--10417 Score: 105
Period size: 38 Copynumber: 2.2 Consensus size: 36
10325 ATATATATAT
*
10335 ATATAAATAAAAACAAAAATAGAATATTAAGAAAAA
1 ATATATATAAAAACAAAAATAGAATATTAAGAAAAA
*
10371 ATATATATAAAAACGTATAAAATATAATATTAA-AAAAA
1 ATATATATAAAAAC--A-AAAATAGAATATTAAGAAAAA
*
10409 ATGTATATA
1 ATATATATA
10418 CATAGTAAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
36 13 0.32
38 14 0.34
39 14 0.34
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.27
Consensus pattern (36 bp):
ATATATATAAAAACAAAAATAGAATATTAAGAAAAA
Found at i:10459 original size:2 final size:2
Alignment explanation
Indices: 10447--10498 Score: 70
Period size: 2 Copynumber: 26.0 Consensus size: 2
10437 TTAATACATC
*
10447 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TGA TA TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA
*
10489 GA TA TA TA TA
1 TA TA TA TA TA
10499 ATAAAAATAG
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
1 1 0.02
2 42 0.93
3 2 0.04
ACGTcount: A:0.50, C:0.02, G:0.04, T:0.44
Consensus pattern (2 bp):
TA
Found at i:10502 original size:14 final size:14
Alignment explanation
Indices: 10447--10521 Score: 71
Period size: 14 Copynumber: 5.1 Consensus size: 14
10437 TTAATACATC
* *
10447 TATACATATATATA
1 TATATATATATAAA
*
10461 TATATATATATATA
1 TATATATATATAAA
10475 TATATATGATATAAGA
1 TATATAT-ATATAA-A
10491 TATATATA-ATAAA
1 TATATATATATAAA
*
10504 AATAGTATAATATAAA
1 TATA-TAT-ATATAAA
10520 TA
1 TA
10522 AAAAATGAAT
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
13 4 0.08
14 27 0.52
15 7 0.13
16 14 0.27
ACGTcount: A:0.55, C:0.01, G:0.04, T:0.40
Consensus pattern (14 bp):
TATATATATATAAA
Found at i:10534 original size:38 final size:37
Alignment explanation
Indices: 10492--10573 Score: 85
Period size: 38 Copynumber: 2.2 Consensus size: 37
10482 GATATAAGAT
* * *
10492 ATATATAATAAAAATAGTATAATATAAATAAAAA-ATGA
1 ATATATAA-AAAAATA-AAAAATATAAATAAAAATATAA
* *
10530 ATATAGTAAATAAATAAAAAATATAATTAAAAATATAA
1 ATATA-TAAAAAAATAAAAAATATAAATAAAAATATAA
10568 ATATAT
1 ATATAT
10574 GGGACGAAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
37 15 0.41
38 19 0.51
39 3 0.08
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (37 bp):
ATATATAAAAAAATAAAAAATATAAATAAAAATATAA
Found at i:10573 original size:20 final size:19
Alignment explanation
Indices: 10492--10573 Score: 73
Period size: 20 Copynumber: 4.3 Consensus size: 19
10482 GATATAAGAT
10492 ATATATAATAAAAATAGTATA
1 ATATATAATAAAAATA-TA-A
*
10513 ATATA-AATAAAAA-ATGA
1 ATATATAATAAAAATATAA
*
10530 ATATAGTAA-ATAAATA-AA
1 ATATA-TAATAAAAATATAA
*
10548 AAATATAATTAAAAATATAA
1 ATATATAA-TAAAAATATAA
10568 ATATAT
1 ATATAT
10574 GGGACGAAAT
Statistics
Matches: 49, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
17 9 0.18
18 10 0.20
19 10 0.20
20 15 0.31
21 5 0.10
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (19 bp):
ATATATAATAAAAATATAA
Found at i:11727 original size:85 final size:83
Alignment explanation
Indices: 11578--11796 Score: 257
Period size: 85 Copynumber: 2.6 Consensus size: 83
11568 AGGTGTCATC
* *
11578 GAGTTGAATGGAATCGAACTCGACA--TTTTTCGTTGACAGATAGCCCTTCTTGCCTTGAGCTAT
1 GAGTTGAATGTAATCGAACTCGA-AGGTTTTT-GTTGACAGATAACCCTTCTTGCCTTGAGCTAT
* *
11641 GCTGTAAATT-TGATTTACCTCT-
64 GCTGCAAATTATG-TGT--CT-TG
* * * *
11663 TAGTTGAATGTAATCGAACTCGAAGGTTTTTGATGATAGATAACCCTTCTTGCCTTGAGTTATGC
1 GAGTTGAATGTAATCGAACTCGAAGGTTTTTGTTGACAGATAACCCTTCTTGCCTTGAGCTATGC
11728 TGCAAATTATGTGTCTTG
66 TGCAAATTATGTGTCTTG
* * *
11746 GAGTTGAGTGTAGTCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTT
1 GAGTTGAATGTAATCGAACTCGAAGGTTTTTGTTGACAGATAACCCTTCTT
11797 TGAGTTGGAT
Statistics
Matches: 116, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
82 1 0.01
83 47 0.41
84 1 0.01
85 60 0.52
86 7 0.06
ACGTcount: A:0.24, C:0.17, G:0.22, T:0.37
Consensus pattern (83 bp):
GAGTTGAATGTAATCGAACTCGAAGGTTTTTGTTGACAGATAACCCTTCTTGCCTTGAGCTATGC
TGCAAATTATGTGTCTTG
Found at i:12225 original size:109 final size:109
Alignment explanation
Indices: 12028--12233 Score: 306
Period size: 109 Copynumber: 1.9 Consensus size: 109
12018 AACTGGGAAA
* *
12028 TTGTTTGTTGACAGCCAGTCGCCCCTTCGCTTTGAAGTTGAGCTTGTGTTGTCTCGAGTTCAATA
1 TTGTTTGTTGACAACCAGTCGCCCCTTCGCTTTGAAGTTGAGCTTGTGTTGTCTCGAGTCCAATA
* **
12093 TCCTTCGCTGTGAAGGTGGAATTGACTCTGAATGAAACTAAAAG
66 TCCCTCGCTGTGAAGGTAAAATTGACTCTGAATGAAACTAAAAG
* * *
12137 TTGTTTGTTGACAATCAGTCGCCCCTTCG-TTATGAATTTGAGCTTGTGTTGTCTTGAGTCCAAT
1 TTGTTTGTTGACAACCAGTCGCCCCTTCGCTT-TGAAGTTGAGCTTGTGTTGTCTCGAGTCCAAT
* *
12201 ATCCCTCGCTGTGAAGTTAAAATTGGCTCTGAA
65 ATCCCTCGCTGTGAAGGTAAAATTGACTCTGAA
12234 ACTGGGAAGC
Statistics
Matches: 86, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
108 2 0.02
109 84 0.98
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.36
Consensus pattern (109 bp):
TTGTTTGTTGACAACCAGTCGCCCCTTCGCTTTGAAGTTGAGCTTGTGTTGTCTCGAGTCCAATA
TCCCTCGCTGTGAAGGTAAAATTGACTCTGAATGAAACTAAAAG
Found at i:13068 original size:67 final size:66
Alignment explanation
Indices: 12950--13119 Score: 184
Period size: 67 Copynumber: 2.6 Consensus size: 66
12940 AAGATATATG
* * * **
12950 TTGTTTCATGA-AAAC-GATCTCAAGGGAAACAAAATTTTGTTTTAGGGGAAATAAATTTGAAGA
1 TTGTTTCAAGAGAAACTG-TCTCAAGGGAAACAAAATTTTCTTTTAGGAGAAATAAATTCAAAGA
13013 TTTT
65 --TT
** * *
13017 TTGTTTCAAGAGAAGTTGTCTCAAGGGAGACTAAA-TTTCTTTTAGGAGAAATAAATTCAAAGAT
1 TTGTTTCAAGAGAAACTGTCTCAAGGGAAACAAAATTTTCTTTTAGGAGAAATAAATTCAAAGAT
13081 T
66 T
* * *
13082 TTGTTTCAAGGGAAACTGTCTCAAGAGAAACGAAATTT
1 TTGTTTCAAGAGAAACTGTCTCAAGGGAAACAAAATTT
13120 GTTTCAAGAG
Statistics
Matches: 85, Mismatches: 15, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
65 31 0.36
66 2 0.02
67 34 0.40
68 17 0.20
69 1 0.01
ACGTcount: A:0.37, C:0.09, G:0.20, T:0.34
Consensus pattern (66 bp):
TTGTTTCAAGAGAAACTGTCTCAAGGGAAACAAAATTTTCTTTTAGGAGAAATAAATTCAAAGAT
T
Found at i:13118 original size:65 final size:65
Alignment explanation
Indices: 12950--13248 Score: 222
Period size: 65 Copynumber: 4.7 Consensus size: 65
12940 AAGATATATG
* * * * **
12950 TTGTTTCATGA-AAAC-GATCTCAAGGGAAACAAAATTTTGTTTTAGGGGAAATAAATTTGAAGA
1 TTGTTTCAAGAGAAACTG-TCTCAAGGGAGACAAAA-TTTGTTTCAGGAGAAATAAATTCAAAGA
13013 TTTT
64 --TT
** * * *
13017 TTGTTTCAAGAGAAGTTGTCTCAAGGGAGACTAAATTTCTTTTAGGAGAAATAAATTCAAAGATT
1 TTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAGGAGAAATAAATTCAAAGATT
* * * * * * *
13082 TTGTTTCAAGGGAAACTGTCTCAAGAGAAACGAAATTTGTTTCA--AG--AGAGA--CAAA-ACT
1 TTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAGGAGAAATAAATTCAAAGATT
* * * ** * * * *
13140 TAG-TTCTAAAAGAAACTGTCTCAAGGGAGACGAAATTTGTTTCAAAAAAAACATATTCAAATAT
1 TTGTTTC-AAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAGGAGAAATAAATTCAAAGAT
13204 T
65 T
* *
13205 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTCA
1 TTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCA
13249 AGGGAAACTG
Statistics
Matches: 187, Mismatches: 34, Indels: 24
0.76 0.14 0.10
Matches are distributed among these distances:
57 3 0.02
58 37 0.20
59 4 0.02
60 1 0.01
61 3 0.02
62 3 0.02
63 2 0.01
64 4 0.02
65 75 0.40
66 3 0.02
67 34 0.18
68 17 0.09
69 1 0.01
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.31
Consensus pattern (65 bp):
TTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAGGAGAAATAAATTCAAAGATT
Found at i:13251 original size:36 final size:36
Alignment explanation
Indices: 13208--13393 Score: 174
Period size: 36 Copynumber: 5.3 Consensus size: 36
13198 AAATATTTTG
*
13208 TTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTG
1 TTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTA
* *
13244 TTTCAAGGGAAACTGTCTCAAGAGTGACGAAATTTA
1 TTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTA
* * *
13280 TTTCAAGGGAAA-TGTTTTC-A-A-TG-----TTTATA
1 TTTCAAGGGAAACTG-TCTCAAGAGAGACAAAATT-TA
* * * *
13309 TTTCAAGAGAAACTGTCTCAAGGGAGGCAAAATTTTG
1 TTTCAAGGGAAACTGTCTCAAGAGAGACAAAA-TTTA
* *
13346 TTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCA
1 TTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTA
13382 TTTCAAGGGAAA
1 TTTCAAGGGAAA
13394 TGTTTTCAAT
Statistics
Matches: 121, Mismatches: 17, Indels: 24
0.75 0.10 0.15
Matches are distributed among these distances:
28 2 0.02
29 16 0.13
30 3 0.02
32 1 0.01
33 2 0.02
34 1 0.01
35 3 0.02
36 62 0.51
37 29 0.24
38 2 0.02
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (36 bp):
TTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTA
Found at i:13359 original size:37 final size:36
Alignment explanation
Indices: 13308--13393 Score: 109
Period size: 37 Copynumber: 2.4 Consensus size: 36
13298 CAATGTTTAT
* * * * *
13308 ATTTCAAGAGAAACTGTCTCAAGGGAGGCAAAATTTT
1 ATTTCAAGGGAAACTATCTCAAGAGAGACAAAA-TTC
*
13345 GTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTC
1 ATTTCAAGGGAAACTATCTCAAGAGAGACAAAATTC
13381 ATTTCAAGGGAAA
1 ATTTCAAGGGAAA
13394 TGTTTTCAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
36 14 0.33
37 28 0.67
ACGTcount: A:0.41, C:0.14, G:0.21, T:0.24
Consensus pattern (36 bp):
ATTTCAAGGGAAACTATCTCAAGAGAGACAAAATTC
Found at i:13386 original size:102 final size:102
Alignment explanation
Indices: 13208--13591 Score: 538
Period size: 102 Copynumber: 3.8 Consensus size: 102
13198 AAATATTTTG
* * * *
13208 TTTCAAGGGAAACTGTCTCAAGAGAGACAAAA-TTTGTTTCAAGGGAAACTGTCTCAAGAGTGAC
1 TTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAGAC
* *
13272 GAAATTTATTTCAAGGGAAATGTTTTCAATGTTTATA
66 AAAATTCATTTCAAGGGAAATGTTTTCAATGTTTATA
*
13309 TTTCAAGAGAAACTGTCTCAAGGGAGGCAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAGAC
1 TTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAGAC
13374 AAAATTCATTTCAAGGGAAATGTTTTCAATGTTTATA
66 AAAATTCATTTCAAGGGAAATGTTTTCAATGTTTATA
* * * * ** *
13411 TTTCAAGAGAAACTATATCAAGGGAGATAAAATTTTGTTTGAAGGGAAACTATCTCAATCGAGAT
1 TTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAGAC
*
13476 AAAATTCATTTCAAGGGAAATGTTTTCAATGTTTATG
66 AAAATTCATTTCAAGGGAAATGTTTTCAATGTTTATA
* * ** * * *
13513 TTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTAGTTCCAAAAGAAAATGTCTCAAGGGAGAC
1 TTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAGAC
*
13578 GAAATT-AGTTTCAA
66 AAAATTCA-TTTCAA
13592 TGAAAACAGA
Statistics
Matches: 251, Mismatches: 30, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
101 30 0.12
102 221 0.88
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (102 bp):
TTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAGAC
AAAATTCATTTCAAGGGAAATGTTTTCAATGTTTATA
Found at i:13619 original size:204 final size:203
Alignment explanation
Indices: 13123--13628 Score: 631
Period size: 204 Copynumber: 2.5 Consensus size: 203
13113 GAAATTTGTT
* * * * *
13123 TCAAGAGAGACAAAACTTAGTTCTAAAAGAAACTGTCTCAAGGGAGACGAAATTTGTTTCAAAAA
1 TCAAGGGAGACAAAATTTAGTTCCAAAAGAAACTGTCTCAAGGGAGACGAAATTAGTTTCAAAGA
* * * *
13188 AAACATATTCAAATATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGGG
66 AAACAGATTCAAATATTTTATTTCAAGGGAAACTATATCAAGAGAGACAAAATTTGTTTCAAGGG
* * * *
13253 AAACTGTCTCAAGAGTGACGAAATTTATTTCAAGGGAAATGTTTTCAATGTTTATATTTCAAGAG
131 AAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTATATTTCAAGAG
13318 AAACTGTC
196 AAACTGTC
* * * ** * * * *
13326 TCAAGGGAGGCAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCA-TTTCAAGG
1 TCAAGGGAGACAAAATTTAGTTCCAAAAGAAACTGTCTCAAGGGAGACGAAATT-AGTTTCAAAG
* * * * * * * *
13390 GAAA-TGTTTTC-AATGTTTATATTTCAAGAGAAACTATATCAAGGGAGATAAAATTTTGTTTGA
65 AAAACAG-ATTCAAATATTT-TATTTCAAGGGAAACTATATCAAGAGAGACAAAA-TTTGTTTCA
** * *
13453 AGGGAAACTATCTCAATCGAGATAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTATGTTTCA
127 AGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTATATTTCA
13518 AGAGAAACTGTC
192 AGAGAAACTGTC
* *
13530 TCAAGGGAGACAAAATTTAGTTCCAAAAGAAAATGTCTCAAGGGAGACGAAATTAGTTTCAATGA
1 TCAAGGGAGACAAAATTTAGTTCCAAAAGAAACTGTCTCAAGGGAGACGAAATTAGTTTCAAAGA
13595 AAACAGATTCAAATATTTTATTTCAAGGGAAACT
66 AAACAGATTCAAATATTTTATTTCAAGGGAAACT
13629 TGGAAACTGT
Statistics
Matches: 247, Mismatches: 49, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
202 6 0.02
203 84 0.34
204 150 0.61
205 7 0.03
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.30
Consensus pattern (203 bp):
TCAAGGGAGACAAAATTTAGTTCCAAAAGAAACTGTCTCAAGGGAGACGAAATTAGTTTCAAAGA
AAACAGATTCAAATATTTTATTTCAAGGGAAACTATATCAAGAGAGACAAAATTTGTTTCAAGGG
AAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTATATTTCAAGAG
AAACTGTC
Found at i:13628 original size:102 final size:101
Alignment explanation
Indices: 13123--13591 Score: 521
Period size: 102 Copynumber: 4.6 Consensus size: 101
13113 GAAATTTGTT
* * ** * * **
13123 TCAAGAGAGACAAAACTTAG-TTCTAAAAGAAACTGTCTCAAGGGAGACGAAATTTGTTTCAAAA
1 TCAAGGGAGACAAAATTTAGTTTC-AAGGGAAACTGTCTCAAGAGAGACGAAA-TTATTTCAAGG
* ** * * * *
13187 AAAACATATTCAAATATTT-TGTTTCAAGGGAAACTGTC
64 GAAATGTTTTC-AATGTTTATATTTCAAGAGAAACTGTC
* *
13225 TCAAGAGAGACAAAATTT-GTTTCAAGGGAAACTGTCTCAAGAGTGACGAAATTTATTTCAAGGG
1 TCAAGGGAGACAAAATTTAGTTTCAAGGGAAACTGTCTCAAGAGAGACGAAA-TTATTTCAAGGG
13289 AAATGTTTTCAATGTTTATATTTCAAGAGAAACTGTC
65 AAATGTTTTCAATGTTTATATTTCAAGAGAAACTGTC
* * * *
13326 TCAAGGGAGGCAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGG
1 TCAAGGGAGACAAAATTTAGTTTCAAGGGAAACTGTCTCAAGAGAGACGAAATT-ATTTCAAGGG
* *
13391 AAATGTTTTCAATGTTTATATTTCAAGAGAAACTATA
65 AAATGTTTTCAATGTTTATATTTCAAGAGAAACTGTC
* * * * ** **
13428 TCAAGGGAGATAAAATTTTGTTTGAAGGGAAACTATCTCAATCGAGATAAAATTCATTTCAAGGG
1 TCAAGGGAGACAAAATTTAGTTTCAAGGGAAACTGTCTCAAGAGAGACGAAATT-ATTTCAAGGG
*
13493 AAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTC
65 AAATGTTTTCAATGTTTATATTTCAAGAGAAACTGTC
* ** * *
13530 TCAAGGGAGACAAAATTTAGTTCCAAAAGAAAATGTCTCAAGGGAGACGAAATTAGTTTCAA
1 TCAAGGGAGACAAAATTTAGTTTCAAGGGAAACTGTCTCAAGAGAGACGAAATTA-TTTCAA
13592 TGAAAACAGA
Statistics
Matches: 319, Mismatches: 43, Indels: 10
0.86 0.12 0.03
Matches are distributed among these distances:
100 6 0.02
101 77 0.24
102 236 0.74
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.30
Consensus pattern (101 bp):
TCAAGGGAGACAAAATTTAGTTTCAAGGGAAACTGTCTCAAGAGAGACGAAATTATTTCAAGGGA
AATGTTTTCAATGTTTATATTTCAAGAGAAACTGTC
Found at i:14547 original size:31 final size:31
Alignment explanation
Indices: 14464--14575 Score: 111
Period size: 32 Copynumber: 3.5 Consensus size: 31
14454 TTTGCATCAG
* * * *
14464 GATGTTGAAT-TCCCAAAGATGCCCCAATATTC
1 GATGTTGAATCT-CAAAAAATG-CCCAACATTT
14496 GATGTTGAATCTCAAAAAATGCTCCAACATTT
1 GATGTTGAATCTCAAAAAATGC-CCAACATTT
* *
14528 GATGTTAAATCT-AAAAAATGCCTTAACATTT
1 GATGTTGAATCTCAAAAAATGCC-CAACATTT
14559 GATGTTGAATCTTCAAA
1 GATGTTGAATC-TCAAA
14576 GATGCCCTCA
Statistics
Matches: 68, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
30 1 0.01
31 27 0.40
32 36 0.53
33 4 0.06
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (31 bp):
GATGTTGAATCTCAAAAAATGCCCAACATTT
Found at i:15399 original size:27 final size:27
Alignment explanation
Indices: 15352--15430 Score: 112
Period size: 25 Copynumber: 3.0 Consensus size: 27
15342 TTTTTCTTCA
15352 ATTTTC-CTTTG-TTTTTTCTCTTTTT
1 ATTTTCTCTTTGCTTTTTTCTCTTTTT
15377 ATTTTCTCTTTGCTTTTTTCTC-TTTT
1 ATTTTCTCTTTGCTTTTTTCTCTTTTT
15403 -TTTTCTCTTTGCTTTTTTTTCTCTTTTT
1 ATTTTCTCTTTGC--TTTTTTCTCTTTTT
15431 GTTCTGATTG
Statistics
Matches: 49, Mismatches: 0, Indels: 7
0.88 0.00 0.12
Matches are distributed among these distances:
25 18 0.37
26 9 0.18
27 18 0.37
28 4 0.08
ACGTcount: A:0.03, C:0.18, G:0.04, T:0.76
Consensus pattern (27 bp):
ATTTTCTCTTTGCTTTTTTCTCTTTTT
Found at i:15419 original size:16 final size:16
Alignment explanation
Indices: 15398--15428 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
15388 GCTTTTTTCT
15398 CTTTTTTTTCTCTTTG
1 CTTTTTTTTCTCTTTG
15414 CTTTTTTTTCTCTTT
1 CTTTTTTTTCTCTTT
15429 TTGTTCTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.00, C:0.19, G:0.03, T:0.77
Consensus pattern (16 bp):
CTTTTTTTTCTCTTTG
Found at i:15428 original size:11 final size:12
Alignment explanation
Indices: 15353--15430 Score: 77
Period size: 13 Copynumber: 6.0 Consensus size: 12
15343 TTTTCTTCAA
15353 TTTTC-CTTTGTT
1 TTTTCTCTTT-TT
15365 TTTTCTCTTTTT
1 TTTTCTCTTTTT
15377 ATTTTCTCTTTGCTT
1 -TTTTCTCTTT--TT
15392 TTTTCTCTTTTT
1 TTTTCTCTTTTT
*
15404 TTTCTCTTTGCTTTT
1 TTT-TCTCT--TTTT
15419 TTTTCTCTTTTT
1 TTTTCTCTTTTT
15431 GTTCTGATTG
Statistics
Matches: 57, Mismatches: 2, Indels: 14
0.78 0.03 0.19
Matches are distributed among these distances:
12 16 0.28
13 18 0.32
14 14 0.25
15 9 0.16
ACGTcount: A:0.01, C:0.18, G:0.04, T:0.77
Consensus pattern (12 bp):
TTTTCTCTTTTT
Found at i:15435 original size:27 final size:25
Alignment explanation
Indices: 15353--15435 Score: 107
Period size: 27 Copynumber: 3.2 Consensus size: 25
15343 TTTTCTTCAA
15353 TTTTC-CTTTG-TTTTTTCTCTTTTT
1 TTTTCTCTTTGCTTTTTTCTC-TTTT
15377 ATTTTCTCTTTGCTTTTTTCTCTTTT
1 -TTTTCTCTTTGCTTTTTTCTCTTTT
15403 TTTTCTCTTTGCTTTTTTTTCTCTTTT
1 TTTTCTCTTTGC--TTTTTTCTCTTTT
*
15430 TGTTCT
1 TTTTCT
15436 GATTGAATCT
Statistics
Matches: 53, Mismatches: 1, Indels: 6
0.88 0.02 0.10
Matches are distributed among these distances:
25 17 0.32
26 9 0.17
27 27 0.51
ACGTcount: A:0.01, C:0.18, G:0.05, T:0.76
Consensus pattern (25 bp):
TTTTCTCTTTGCTTTTTTCTCTTTT
Found at i:18613 original size:18 final size:19
Alignment explanation
Indices: 18592--18628 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
18582 TATTAATGGA
18592 GTAAAA-AAATAAAAAAGG
1 GTAAAAGAAATAAAAAAGG
*
18610 GTAAAAGAAATTAAAAAGG
1 GTAAAAGAAATAAAAAAGG
18629 AATAAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.68, C:0.00, G:0.19, T:0.14
Consensus pattern (19 bp):
GTAAAAGAAATAAAAAAGG
Found at i:18864 original size:17 final size:17
Alignment explanation
Indices: 18804--18864 Score: 50
Period size: 17 Copynumber: 3.3 Consensus size: 17
18794 AAATAAAAAC
*
18804 AAAAATAGAATATTAAG
1 AAAAATATAATATTAAG
**
18821 AAAATATATATATAAAAACG
1 AAAA-ATATA-ATATTAA-G
18841 TATAAAATATAATATTAAG
1 -A-AAAATATAATATTAAG
18860 AAAAA
1 AAAAA
18865 ATGTATATAC
Statistics
Matches: 34, Mismatches: 5, Indels: 10
0.69 0.10 0.20
Matches are distributed among these distances:
17 8 0.24
18 5 0.15
19 6 0.18
20 6 0.18
21 6 0.18
22 3 0.09
ACGTcount: A:0.66, C:0.02, G:0.07, T:0.26
Consensus pattern (17 bp):
AAAAATATAATATTAAG
Found at i:18910 original size:2 final size:2
Alignment explanation
Indices: 18903--18953 Score: 70
Period size: 2 Copynumber: 26.0 Consensus size: 2
18893 TTAATACATC
18903 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TGA TA TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA
*
18944 GA TA TA TA TA
1 TA TA TA TA TA
18954 ATAAAAATAG
Statistics
Matches: 45, Mismatches: 1, Indels: 6
0.87 0.02 0.12
Matches are distributed among these distances:
1 2 0.04
2 41 0.91
3 2 0.04
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (2 bp):
TA
Found at i:18957 original size:14 final size:14
Alignment explanation
Indices: 18903--18976 Score: 71
Period size: 14 Copynumber: 5.1 Consensus size: 14
18893 TTAATACATC
*
18903 TATATATATATATA
1 TATATATATATAAA
*
18917 TATATATATATATA
1 TATATATATATAAA
18931 TATA-ATGATATAAGA
1 TATATAT-ATATAA-A
18946 TATATATA-ATAAA
1 TATATATATATAAA
*
18959 AATAGTATAATATAAA
1 TATA-TAT-ATATAAA
18975 TA
1 TA
18977 AAAAAAAAGG
Statistics
Matches: 51, Mismatches: 3, Indels: 10
0.80 0.05 0.16
Matches are distributed among these distances:
13 6 0.12
14 30 0.59
15 7 0.14
16 8 0.16
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (14 bp):
TATATATATATAAA
Found at i:20077 original size:20 final size:20
Alignment explanation
Indices: 20054--20097 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
20044 GTTATTCTGA
*
20054 AATTAAATGTTAGAATGTTG
1 AATTAAATGTTAAAATGTTG
**
20074 AATTTGATGTTAAAATGTTG
1 AATTAAATGTTAAAATGTTG
20094 AATT
1 AATT
20098 GGATCAATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.43
Consensus pattern (20 bp):
AATTAAATGTTAAAATGTTG
Found at i:22385 original size:20 final size:21
Alignment explanation
Indices: 22348--22389 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
22338 GAATATATTG
**
22348 AATATTTTTATTTTTAATTTA
1 AATATTTTTATTCATAATTTA
22369 AATATTTTT-TTCATAATTTA
1 AATATTTTTATTCATAATTTA
22389 A
1 A
22390 TTTAACATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (21 bp):
AATATTTTTATTCATAATTTA
Found at i:22916 original size:14 final size:14
Alignment explanation
Indices: 22897--22925 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
22887 TATATTAGTG
22897 TAATGATTTTTTAA
1 TAATGATTTTTTAA
22911 TAATGATTTTTTAA
1 TAATGATTTTTTAA
22925 T
1 T
22926 TTAATTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TAATGATTTTTTAA
Found at i:46119 original size:25 final size:26
Alignment explanation
Indices: 46060--46121 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 26
46050 TTCTAAAAAA
*
46060 TAAAAAAA-TATTTTTTTAAATATAT
1 TAAAAAAATTATTTTTTAAAATATAT
*
46085 GAAAATAAATTA-TTTTTAAAAT-TATT
1 TAAAA-AAATTATTTTTTAAAATATA-T
46111 TAAAAAAATTA
1 TAAAAAAATTA
46122 AGTTATCAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
25 12 0.39
26 17 0.55
27 2 0.06
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.44
Consensus pattern (26 bp):
TAAAAAAATTATTTTTTAAAATATAT
Found at i:46371 original size:6 final size:6
Alignment explanation
Indices: 46362--46392 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
46352 AAAATATTTT
*
46362 AATTAA AATTAA AATTAA AAGTAA AATTAA A
1 AATTAA AATTAA AATTAA AATTAA AATTAA A
46393 TTTTAGTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (6 bp):
AATTAA
Found at i:48895 original size:3 final size:3
Alignment explanation
Indices: 48887--48915 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
48877 GGAAAGCGTT
48887 TGA TGA TGA TGA TGA TGA TGA TGA TGA TG
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TG
48916 TCAATTATAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.34, T:0.34
Consensus pattern (3 bp):
TGA
Found at i:51798 original size:28 final size:28
Alignment explanation
Indices: 51754--51808 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
51744 ATCCGTTGAG
*
51754 TGTGTCTGTTGTCAATGTTGTTTTCTTT
1 TGTGTCCGTTGTCAATGTTGTTTTCTTT
*
51782 TGTGTCCGTTGTTAATGTTGTTTTCTT
1 TGTGTCCGTTGTCAATGTTGTTTTCTT
51809 GTGAGGTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.07, C:0.11, G:0.22, T:0.60
Consensus pattern (28 bp):
TGTGTCCGTTGTCAATGTTGTTTTCTTT
Found at i:56008 original size:3 final size:3
Alignment explanation
Indices: 56000--56025 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
55990 ATCTCACCCA
56000 TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TT
56026 TTTCCTTCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:59303 original size:14 final size:14
Alignment explanation
Indices: 59284--59314 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
59274 CGTTCAATAA
*
59284 TTTGTTCGTTTATG
1 TTTGTTCATTTATG
59298 TTTGTTCATTTATG
1 TTTGTTCATTTATG
59312 TTT
1 TTT
59315 TTTTATGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.10, C:0.06, G:0.16, T:0.68
Consensus pattern (14 bp):
TTTGTTCATTTATG
Found at i:59324 original size:10 final size:11
Alignment explanation
Indices: 59306--59338 Score: 52
Period size: 10 Copynumber: 3.2 Consensus size: 11
59296 TGTTTGTTCA
59306 TTTATGTTTT-
1 TTTATGTTTTG
59316 TTTATGTTTTG
1 TTTATGTTTTG
59327 TTTAT-TTTTG
1 TTTATGTTTTG
59337 TT
1 TT
59339 CATTTATGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 17 0.77
11 5 0.23
ACGTcount: A:0.09, C:0.00, G:0.12, T:0.79
Consensus pattern (11 bp):
TTTATGTTTTG
Found at i:59337 original size:35 final size:35
Alignment explanation
Indices: 59291--59358 Score: 109
Period size: 35 Copynumber: 1.9 Consensus size: 35
59281 TAATTTGTTC
* *
59291 GTTTATGTTTGTTCATTTATGTTTTTTTATGTTTT
1 GTTTATGTTTGTTCATTTATGCTTGTTTATGTTTT
*
59326 GTTTATTTTTGTTCATTTATGCTTGTTTATGTT
1 GTTTATGTTTGTTCATTTATGCTTGTTTATGTT
59359 CACTAGACCC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.12, C:0.04, G:0.15, T:0.69
Consensus pattern (35 bp):
GTTTATGTTTGTTCATTTATGCTTGTTTATGTTTT
Found at i:59625 original size:24 final size:24
Alignment explanation
Indices: 59569--59625 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 24
59559 GATTGTTTAC
* *
59569 GTTTGTTTATGTTCATTCGCTTGT
1 GTTTGTTTACGTTCATTCACTTGT
** * *
59593 GTTCATTTACGTTCGTTCATTTGT
1 GTTTGTTTACGTTCATTCACTTGT
59617 GTTTGTTTA
1 GTTTGTTTA
59626 TCATTTTAAC
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.11, C:0.12, G:0.19, T:0.58
Consensus pattern (24 bp):
GTTTGTTTACGTTCATTCACTTGT
Found at i:60440 original size:7 final size:7
Alignment explanation
Indices: 60428--60652 Score: 134
Period size: 7 Copynumber: 31.1 Consensus size: 7
60418 CGTATTAAAT
60428 TATTATA
1 TATTATA
60435 TA-T-TA
1 TATTATA
60440 TATTATA
1 TATTATA
60447 TTATT-TA
1 -TATTATA
60454 TATTATA
1 TATTATA
*
60461 TAATATA
1 TATTATA
*
60468 TAGTATA
1 TATTATA
60475 TAGTGTAT-
1 TA-T-TATA
60483 TA-TATA
1 TATTATA
60489 GTA-TATA
1 -TATTATA
60496 TATTATA
1 TATTATA
*
60503 TA--GTA
1 TATTATA
60508 TATTATA
1 TATTATA
60515 TATTATA
1 TATTATA
60522 GTATAGCTATA
1 -TAT---TATA
60533 TATCTATA
1 TAT-TATA
60541 TATTAT-
1 TATTATA
60547 TGATTAT-
1 T-ATTATA
*
60554 TGTATATAA
1 TAT-TAT-A
*
60563 TATTATT
1 TATTATA
60570 TATTATA
1 TATTATA
60577 TTATTAT-
1 -TATTATA
60584 TATTATA
1 TATTATA
60591 TATTAATTA
1 TATT-A-TA
60600 TATTATA
1 TATTATA
60607 TTATTATATA
1 -TA-T-TATA
60617 TATTATA
1 TATTATA
60624 TATTTATTA
1 TA-TTA-TA
60633 TATTA-A
1 TATTATA
60639 TATTATA
1 TATTATA
60646 T-TTATA
1 TATTATA
60652 T
1 T
60653 TAATTTATTA
Statistics
Matches: 180, Mismatches: 9, Indels: 59
0.73 0.04 0.24
Matches are distributed among these distances:
5 11 0.06
6 28 0.16
7 75 0.42
8 37 0.21
9 18 0.10
10 7 0.04
11 4 0.02
ACGTcount: A:0.40, C:0.01, G:0.04, T:0.56
Consensus pattern (7 bp):
TATTATA
Found at i:60441 original size:5 final size:5
Alignment explanation
Indices: 60420--60663 Score: 130
Period size: 5 Copynumber: 46.2 Consensus size: 5
60410 CTCATTTTCG
* *
60420 TATTA AATTA T-TATA TATTA TATTA TATTA T-TTA TATTA TATAA TA-TA
1 TATTA TATTA TAT-TA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
* *
60468 TAGTATA TAGTG TATTA TA-TA GTATATA TATTA TATAGTA TATTATA TATTA
1 TA-T-TA TATTA TATTA TATTA -TAT-TA TATTA TAT--TA TA-T-TA TATTA
* * * *
60520 TAGTA TAGCTA TA-TA TCTATA TATTA TTGATTA T-TGTA TATAA TATTA
1 TATTA TA-TTA TATTA TAT-TA TATTA -T-ATTA TAT-TA TATTA TATTA
60568 TTTATTA TATTA TTATTA T-TATA TATTA -ATTA TATTA TATTA TTATATA
1 --TATTA TATTA -TATTA TAT-TA TATTA TATTA TATTA TATTA -TAT-TA
*
60617 TATTA TATATT TATTA TATTAA TATTA TATTTA TATTA -ATT- TATTA
1 TATTA TAT-TA TATTA TATT-A TATTA TA-TTA TATTA TATTA TATTA
60663 T
1 T
60664 TTTAGGTCCA
Statistics
Matches: 190, Mismatches: 17, Indels: 64
0.70 0.06 0.24
Matches are distributed among these distances:
4 25 0.13
5 97 0.51
6 42 0.22
7 25 0.13
8 1 0.01
ACGTcount: A:0.40, C:0.01, G:0.04, T:0.56
Consensus pattern (5 bp):
TATTA
Found at i:60594 original size:50 final size:56
Alignment explanation
Indices: 60496--60664 Score: 158
Period size: 58 Copynumber: 3.1 Consensus size: 56
60486 ATAGTATATA
* * * *
60496 TATTA-TATAGTATATTATATATTATAGTATAGCT-ATA-TATCTATATATT-ATTGAT
1 TATTAGTATA-TATATTATATATT-TATTATA-TTAATATTATATATATATTAATTTAT
*
60551 TATT-GTATATA-A-TAT-TATTTATTATATTATTATTAT-TATATATTAATTATATT
1 TATTAGTATATATATTATATATTTATTATATTAATATTATATATATATTAATT-TA-T
* *
60604 ATATTATTATATATATTATATATTTATTATATTAATATTATATTTATATTAATTTAT
1 -TATTAGTATATATATTATATATTTATTATATTAATATTATATATATATTAATTTAT
60661 TATT
1 TATT
60665 TTAGGTCCAA
Statistics
Matches: 95, Mismatches: 7, Indels: 23
0.76 0.06 0.18
Matches are distributed among these distances:
49 1 0.01
50 16 0.17
51 10 0.11
52 4 0.04
53 2 0.02
54 6 0.06
55 14 0.15
56 5 0.05
57 4 0.04
58 22 0.23
59 11 0.12
ACGTcount: A:0.38, C:0.01, G:0.03, T:0.57
Consensus pattern (56 bp):
TATTAGTATATATATTATATATTTATTATATTAATATTATATATATATTAATTTAT
Found at i:60652 original size:33 final size:34
Alignment explanation
Indices: 60428--60654 Score: 152
Period size: 33 Copynumber: 6.5 Consensus size: 34
60418 CGTATTAAAT
60428 TATTATATATTATATTATATTATTTA-TATTATATAA
1 TATTATATATTATATTATA-TATTTATTA-TAT-TAA
* *
60464 TA-TATAGTA-TATAGTGTAT-TATATAGTATA-T-A
1 TATTATA-TATTATA-T-TATATATTTATTATATTAA
* * *
60496 TATTATATAGTATATTATATATTATAGTATAGCTATA
1 TATTATATATTATATTATATATT-TATTATA-TTA-A
* *
60533 TATCTATATATTAT-TGAT-TATTGTATATAATATTATT
1 TAT-TATATATTATATTATATATT-TAT-T-ATATTA-A
*
60570 TATTATATTATTATTATTATATATTAATTATATT-A
1 TATTATA-TATTA-TATTATATATTTATTATATTAA
60605 TATTAT-TATATATATTATATATTTATTATATTAA
1 TATTATATAT-TATATTATATATTTATTATATTAA
60639 TATTATAT-TTATATTA
1 TATTATATATTATATTA
60655 ATTTATTATT
Statistics
Matches: 157, Mismatches: 12, Indels: 47
0.73 0.06 0.22
Matches are distributed among these distances:
31 3 0.02
32 9 0.06
33 45 0.29
34 10 0.06
35 23 0.15
36 17 0.11
37 27 0.17
38 14 0.09
39 5 0.03
40 4 0.03
ACGTcount: A:0.40, C:0.01, G:0.04, T:0.56
Consensus pattern (34 bp):
TATTATATATTATATTATATATTTATTATATTAA
Found at i:60655 original size:17 final size:17
Alignment explanation
Indices: 60570--60665 Score: 78
Period size: 17 Copynumber: 5.6 Consensus size: 17
60560 TAATATTATT
60570 TATTATATTATTATTATTATA
1 TATTATA-T-TTA-TATTA-A
60591 TATTA-A-TTATATT-A
1 TATTATATTTATATTAA
*
60605 TATTATTATATATATTATA
1 TATTA-TATTTATATTA-A
60624 TATT-TA-TTATATTAA
1 TATTATATTTATATTAA
60639 TATTATATTTATATTAA
1 TATTATATTTATATTAA
60656 T-TTATTATTT
1 TATTA-TATTT
60666 TAGGTCCAAA
Statistics
Matches: 65, Mismatches: 2, Indels: 20
0.75 0.02 0.23
Matches are distributed among these distances:
14 6 0.09
15 5 0.08
16 17 0.26
17 26 0.40
19 5 0.08
20 1 0.02
21 5 0.08
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TATTATATTTATATTAA
Found at i:60664 original size:22 final size:21
Alignment explanation
Indices: 60539--60664 Score: 98
Period size: 22 Copynumber: 5.8 Consensus size: 21
60529 TATATATCTA
* *
60539 TATATTATTGATTATTGTATAT
1 TATATTATTTATTATTATAT-T
*
60561 AATATTATTTATTA-TAT-TAT
1 TATATTATTTATTATTATAT-T
*
60581 TATTATTATATATTAATTATA-T
1 TA-TATTATTTATT-ATTATATT
60603 TATATTATTATATATATTATATAT
1 TATATTATT-TAT-TATTATAT-T
*
60627 T-TATTATATTAATATTATATT
1 TATATTAT-TTATTATTATATT
60648 TATATTAATTTATTATT
1 TATATT-ATTTATTATT
60665 TTAGGTCCAA
Statistics
Matches: 85, Mismatches: 8, Indels: 22
0.74 0.07 0.19
Matches are distributed among these distances:
20 4 0.05
21 20 0.24
22 44 0.52
23 14 0.16
24 3 0.04
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (21 bp):
TATATTATTTATTATTATATT
Found at i:72268 original size:40 final size:39
Alignment explanation
Indices: 72192--72273 Score: 103
Period size: 40 Copynumber: 2.1 Consensus size: 39
72182 GAGGGGGAAC
* ** *
72192 CATCCAAAGAATCAATATTGACTTTTCTATGAAGGGGAGT
1 CATCCAAAGAACCAATATTGACTTAACCATGAAGGGG-GT
72232 CATCCAAAGAACCAATATTGACTTAAACCATG-AGGGGGT
1 CATCCAAAGAACCAATATTGACTT-AACCATGAAGGGGGT
72271 CAT
1 CAT
72274 ATCATTTGGT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
39 5 0.14
40 28 0.76
41 4 0.11
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.26
Consensus pattern (39 bp):
CATCCAAAGAACCAATATTGACTTAACCATGAAGGGGGT
Found at i:73448 original size:7 final size:7
Alignment explanation
Indices: 73423--73767 Score: 234
Period size: 7 Copynumber: 48.1 Consensus size: 7
73413 CGTCCATGAT
73423 TATTATA
1 TATTATA
73430 -ATATATA
1 TAT-TATA
73437 GTATTATA
1 -TATTATA
*
73445 TATTTTA
1 TATTATA
73452 TATTATA
1 TATTATA
73459 GTA-TATA
1 -TATTATA
73466 TATTATA
1 TATTATA
73473 TTATT-TA
1 -TATTATA
73480 TATTATA
1 TATTATA
*
73487 TAGTATA
1 TATTATA
*
73494 TAGTATA
1 TATTATA
*
73501 TA-TAGTG
1 TATTA-TA
73508 TATTATA
1 TATTATA
*
73515 TACTATA
1 TATTATA
73522 TA-TATA
1 TATTATA
73528 TATTATAA
1 TATTAT-A
73536 TATTATA
1 TATTATA
*
73543 TGTTATA
1 TATTATA
73550 TA-TATTA
1 TATTA-TA
*
73557 TATTACA
1 TATTATA
73564 TATGT-TA
1 TAT-TATA
*
73571 TAATAATA
1 T-ATTATA
73579 TATTATA
1 TATTATA
*
73586 TAATATA
1 TATTATA
73593 TATTATA
1 TATTATA
* *
73600 TAGTATG
1 TATTATA
73607 TATTATA
1 TATTATA
73614 TATGT-TA
1 TAT-TATA
73621 TA--ATA
1 TATTATA
73626 TATTATA
1 TATTATA
73633 TATTATAGTA
1 TA-T-TA-TA
73643 TATCTATA
1 TAT-TATA
73651 TATCTATA
1 TAT-TATA
*
73659 TATTATT
1 TATTATA
*
73666 TATTACA
1 TATTATA
73673 -ATATATA
1 TAT-TATA
* *
73680 GTTTTATT
1 -TATTATA
73688 TATTATA
1 TATTATA
73695 TTATTAT-
1 -TATTATA
73702 TATTAT-
1 TATTATA
73708 TATTATA
1 TATTATA
73715 TATTAATTA
1 TATT-A-TA
73724 TATTATA
1 TATTATA
73731 TTATATATA
1 -TAT-TATA
73740 TATTATTA
1 TATTA-TA
*
73748 TAGTAT-
1 TATTATA
73754 TATTATA
1 TATTATA
73761 T-TTATA
1 TATTATA
73767 T
1 T
73768 TAATTTATTA
Statistics
Matches: 275, Mismatches: 29, Indels: 69
0.74 0.08 0.18
Matches are distributed among these distances:
5 4 0.01
6 43 0.16
7 141 0.51
8 65 0.24
9 18 0.07
10 4 0.01
ACGTcount: A:0.40, C:0.01, G:0.04, T:0.54
Consensus pattern (7 bp):
TATTATA
Found at i:73463 original size:19 final size:18
Alignment explanation
Indices: 73441--73767 Score: 129
Period size: 19 Copynumber: 18.2 Consensus size: 18
73431 TATATAGTAT
73441 TATATATTTTATATTATA
1 TATATATTTTATATTATA
*
73459 GTATATATATTATATTAT-
1 -TATATATTTTATATTATA
*
73477 T-TATATTATATAGTATATA
1 TATATATTTTATA-T-TATA
** *
73496 GTATATATAGTGTATTATA
1 -TATATATTTTATATTATA
*
73515 TACTATATATATATATTATAA
1 TA-TATAT-TTTATATTAT-A
*
73536 TATTATATGTTATA-TATA
1 TA-TATATTTTATATTATA
**
73554 T-TATATTACATATGT-TA
1 TATATATTTTATAT-TATA
*
73571 TAATAATATATTATA-TA-A
1 T-AT-ATATTTTATATTATA
* * *
73589 TATATATTATATAGTATG
1 TATATATTTTATATTATA
* *
73607 TAT-TA-TATATGTTATA
1 TATATATTTTATATTATA
*
73623 -ATATATTATATATTATA
1 TATATATTTTATATTATA
* * *
73640 -GTATA-TCTATA-TATC
1 TATATATTTTATATTATA
*
73655 TATATATTATT-TATTACAA
1 TATATATT-TTATATTA-TA
73674 TATATAGTTTTAT-TTAT-
1 TATATA-TTTTATATTATA
73691 TATATTATTATTATTATTAT-
1 TATA-TATT-TTA-TATTATA
73711 TATATATTAATTATATTATA
1 TATATATT--TTATATTATA
*
73731 T-TATA-TATATATTAT-
1 TATATATTTTATATTATA
73746 TATAGTATTATTATATT-TA
1 TATA-TATT-TTATATTATA
73765 TAT
1 TAT
73768 TAATTTATTA
Statistics
Matches: 237, Mismatches: 35, Indels: 72
0.69 0.10 0.21
Matches are distributed among these distances:
15 6 0.03
16 54 0.23
17 36 0.15
18 25 0.11
19 64 0.27
20 36 0.15
21 16 0.07
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (18 bp):
TATATATTTTATATTATA
Found at i:73699 original size:3 final size:3
Alignment explanation
Indices: 73687--73779 Score: 74
Period size: 3 Copynumber: 31.7 Consensus size: 3
73677 ATAGTTTTAT
73687 TTA TTA -TA TTA TTA TTA TTA TTA TTA TATA TTAA TTA -TA TTA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TT-A TTA TTA TTA TTA
* *
73731 TTA TATA TATA TTA TTA -TA GTA TTA TTA -TA TT- TATA TTA AT- TTA
1 TTA T-TA T-TA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
73775 TTA TT
1 TTA TT
73780 TTAGGTTCAA
Statistics
Matches: 76, Mismatches: 3, Indels: 22
0.75 0.03 0.22
Matches are distributed among these distances:
2 12 0.16
3 50 0.66
4 14 0.18
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:73776 original size:14 final size:16
Alignment explanation
Indices: 73676--73778 Score: 63
Period size: 19 Copynumber: 6.2 Consensus size: 16
73666 TATTACAATA
*
73676 TATAGT-TTTATTTAT
1 TATAGTATTAATTTAT
*
73691 TATATTATTATTATTATTAT
1 TATAGTATTA--A-T-TTAT
73711 TATA-TATTAATTATAT
1 TATAGTATTAATT-TAT
*
73727 TATATTATATATATATTAT
1 TATAGTAT-TA-AT-TTAT
73746 TATAGTATT-ATTATAT
1 TATAGTATTAATT-TAT
73762 T-TA-TATTAATTTAT
1 TATAGTATTAATTTAT
73776 TAT
1 TAT
73779 TTTAGGTTCA
Statistics
Matches: 72, Mismatches: 3, Indels: 26
0.71 0.03 0.26
Matches are distributed among these distances:
14 8 0.11
15 13 0.18
16 16 0.22
17 4 0.06
18 4 0.06
19 18 0.25
20 9 0.12
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (16 bp):
TATAGTATTAATTTAT
Found at i:74994 original size:5 final size:5
Alignment explanation
Indices: 74984--75008 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
74974 TTTACAGATC
74984 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
75009 ATTGTTTAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:86716 original size:25 final size:23
Alignment explanation
Indices: 86688--86743 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
86678 ATTGGAGTAC
86688 AAAAAGAAAGAAAAGACAAAAAAAG
1 AAAAAGAAAGAAAAG--AAAAAAAG
***
86713 AAAAATTCAGAAAAGAAAAAAAG
1 AAAAAGAAAGAAAAGAAAAAAAG
86736 AAAAAGAA
1 AAAAAGAA
86744 GAATTTCAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
23 13 0.52
25 12 0.48
ACGTcount: A:0.79, C:0.04, G:0.14, T:0.04
Consensus pattern (23 bp):
AAAAAGAAAGAAAAGAAAAAAAG
Found at i:86728 original size:30 final size:29
Alignment explanation
Indices: 86687--86759 Score: 83
Period size: 29 Copynumber: 2.3 Consensus size: 29
86677 AATTGGAGTA
*
86687 CAAAAAGAAAGAAAAGACAAAAAAAGAAAAATT
1 CAAAAAGAAA-AAAAGA-AAAAGAAG--AAATT
*
86720 CAGAAAAGAAAAAAAGAAAAAGAAGAATTT
1 CA-AAAAGAAAAAAAGAAAAAGAAGAAATT
86750 CAAAAAGAAA
1 CAAAAAGAAA
86760 GCAAAGCCAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
29 8 0.22
30 6 0.16
32 7 0.19
33 8 0.22
34 8 0.22
ACGTcount: A:0.74, C:0.05, G:0.14, T:0.07
Consensus pattern (29 bp):
CAAAAAGAAAAAAAGAAAAAGAAGAAATT
Found at i:88130 original size:24 final size:25
Alignment explanation
Indices: 88103--88162 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 25
88093 ATTGATATTA
*
88103 CAAAAGTTATGT-CATTTGAAGTTC
1 CAAAAGTTATGTACACTTGAAGTTC
88127 CAAAAG--ATGTACCACTTGAAGTTC
1 CAAAAGTTATGTA-CACTTGAAGTTC
*
88151 CAAGAGTTATGT
1 CAAAAGTTATGT
88163 TCGTTGACAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
22 4 0.13
24 22 0.73
26 4 0.13
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (25 bp):
CAAAAGTTATGTACACTTGAAGTTC
Found at i:89211 original size:19 final size:20
Alignment explanation
Indices: 89173--89211 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
89163 ATCAATGACT
89173 TGCATATTATATGATTTTCA
1 TGCATATTATATGATTTTCA
89193 TGCATAATT-TATG-TTTTCA
1 TGCAT-ATTATATGATTTTCA
89212 CATCCTTACT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 9 0.50
21 3 0.17
ACGTcount: A:0.28, C:0.10, G:0.10, T:0.51
Consensus pattern (20 bp):
TGCATATTATATGATTTTCA
Found at i:100498 original size:23 final size:24
Alignment explanation
Indices: 100451--100498 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
100441 AGTCTTTAAG
100451 TATTTTAATTAAATTAATGAAATAA
1 TATTTTAATTAAATT-ATGAAATAA
100476 TATTTTATATT-AATT-TGAAATAA
1 TATTTTA-ATTAAATTATGAAATAA
100499 CTTAAAAACC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 8 0.36
25 11 0.50
26 3 0.14
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (24 bp):
TATTTTAATTAAATTATGAAATAA
Done.