Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000049.1 Hibiscus syriacus cultivar Beakdansim tig00000075_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62030

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3244--3270
10
2.7
10
100
0
54
22
18
40
18
1.91
3692--3864
73
2.3
76
88
6
244
32
16
15
35
1.90
3771--4027
123
2.2
117
82
9
301
27
18
14
39
1.89
3970--4067
40
2.5
40
98
0
187
18
23
9
48
1.76
4007--4210
113
1.8
113
91
2
338
25
21
15
38
1.92
4612--4653
22
1.9
22
85
0
57
38
14
11
35
1.83
4618--4694
22
3.5
22
87
0
109
36
14
14
35
1.86
5054--5219
54
3.1
54
89
0
251
23
21
16
38
1.93
9023--9084
32
1.9
32
96
0
115
19
17
19
43
1.88
9656--9745
8
11.2
8
70
13
51
6
13
0
80
0.91
9657--9720
25
2.5
25
82
10
67
9
9
0
81
0.88
9711--9743
17
1.9
17
93
0
57
3
18
0
78
0.87
9681--9749
25
2.8
25
84
10
88
5
14
0
79
0.90
9729--9782
26
2.0
26
92
3
90
3
14
11
70
1.29
12164--12246
14
6.2
14
69
16
50
55
4
14
25
1.59
12176--12224
12
3.9
12
79
10
53
57
8
12
22
1.61
12166--12222
26
2.2
26
90
0
87
57
7
14
21
1.60
13832--13906
27
2.9
25
79
13
73
64
1
4
30
1.20
14688--14714
11
2.5
11
100
0
54
74
0
0
25
0.83
22022--22086
25
2.7
24
77
13
62
46
3
15
35
1.62
22519--22595
31
2.5
31
95
0
136
53
16
0
29
1.44
27103--27164
27
2.3
28
75
8
65
33
24
17
24
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35330--35364
7
5.0
7
100
0
70
14
14
14
57
1.66
35853--36046
108
1.8
103
92
5
325
29
12
9
47
1.74
39582--39666
28
3.0
28
94
0
143
32
20
16
30
1.94
40764--40790
14
1.9
14
100
0
54
22
37
33
7
1.82
42949--42988
20
2.0
20
85
0
53
42
2
5
50
1.37
43424--43452
2
14.5
2
100
0
58
0
48
0
51
1.00
46833--46868
12
2.8
13
87
8
56
63
0
2
33
1.08
46982--47046
10
6.1
10
74
13
51
72
1
4
21
1.11
47131--47171
20
2.1
19
90
4
64
58
12
12
17
1.63
48618--48945
85
3.9
84
84
3
383
24
19
23
32
1.97
48917--48969
26
2.0
26
96
0
97
24
13
26
35
1.92
48833--49055
110
2.0
110
94
0
392
21
19
24
34
1.97
49015--49158
71
2.0
71
93
0
243
25
20
22
32
1.98
48943--49242
155
1.9
155
88
2
451
24
19
23
33
1.97
49086--49496
84
5.0
84
83
2
526
23
18
22
35
1.95
49086--49496
163
2.5
166
83
4
524
23
18
22
35
1.95
49496--49983
80
6.1
80
90
0
733
23
19
23
32
1.97
50822--51019
99
2.0
99
89
0
306
32
18
16
32
1.94
53614--53749
4
32.8
4
73
20
54
72
0
3
23
1.06
53622--53743
10
12.3
10
69
17
51
71
0
4
23
1.09
53646--53741
13
7.2
14
66
28
50
71
1
3
23
1.06
53659--53751
9
10.1
9
72
18
50
73
1
3
22
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53838--53876
20
2.0
20
94
0
69
56
10
12
20
1.65
55893--56050
81
2.0
81
91
2
255
41
18
13
26
1.87
56142--56171
11
2.7
11
100
0
60
6
36
0
56
1.26
56326--56411
45
2.0
42
84
8
111
53
10
13
22
1.70
56855--56910
29
1.9
29
82
7
69
64
0
5
30
1.16
60063--60091
2
14.5
2
100
0
58
48
0
0
51
1.00

Tables:   1

The End!