genome.fa.s490.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000490.1 Hibiscus syriacus cultivar Beakdansim tig00000934_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78149

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5571--5620	26	1.9	26	95	0	91	42	10	10	38	1.72
9689--9765	31	2.5	31	85	10	104	45	5	7	41	1.55
13773--13802	14	2.2	14	94	5	53	36	13	13	36	1.84
16056--16180	34	3.8	34	73	19	129	42	10	16	31	1.81
16448--16509	23	2.9	21	75	15	56	20	6	4	67	1.32
16462--16507	24	2.0	23	83	12	58	19	6	4	69	1.28
16523--16654	43	3.0	44	77	12	137	30	2	0	66	1.09
16585--16716	9	13.4	9	69	20	61	17	6	0	75	1.04
16579--16641	31	2.0	33	84	12	87	23	3	0	73	0.98
16607--16683	24	3.2	24	77	15	70	19	5	1	74	1.08
16591--16675	24	3.7	21	69	25	55	20	2	1	76	0.96
16803--16832	15	2.0	15	100	0	60	20	20	0	60	1.37
19774--19807	16	2.1	16	89	10	52	76	8	14	0	1.01
19796--19869	23	3.2	23	78	16	66	75	9	13	1	1.10
20505--20555	22	2.3	22	96	0	93	35	27	11	25	1.91
21414--21518	36	2.9	36	88	2	156	24	23	12	39	1.89
21414--21523	37	3.0	37	87	2	159	26	23	11	38	1.89
21432--21888	102	4.5	102	93	0	772	30	20	12	36	1.90
21636--21722	37	2.4	37	88	1	122	25	20	13	40	1.89
21752--21823	37	2.0	37	86	2	101	26	22	13	37	1.92
21788--21953	65	2.6	65	95	0	296	31	19	12	36	1.89
21672--21988	166	1.9	169	90	1	514	30	20	12	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22061--22134	37	2.0	37	83	0	94	28	21	10	39	1.87
22593--23480	105	8.5	105	80	8	862	32	25	19	21	1.97
22597--23480	424	2.1	413	82	5	1094	33	25	19	21	1.97
23943--24011	34	2.0	34	94	0	120	42	11	14	31	1.82
24346--24398	24	2.3	23	80	9	63	20	5	3	69	1.25
24470--24591	9	12.8	9	68	19	52	17	4	0	77	1.00
24425--24552	19	6.5	19	70	22	77	23	3	1	71	1.08
24477--24559	23	3.6	23	76	17	75	19	3	1	75	1.01
24428--24541	38	2.9	38	73	19	99	23	2	1	71	1.07
24678--24707	15	2.0	15	100	0	60	20	20	0	60	1.37
29211--29264	14	4.1	14	77	18	71	9	14	25	50	1.73
29212--29273	24	2.6	24	89	0	97	9	14	24	51	1.72
30362--30428	16	4.3	16	86	3	75	13	8	16	61	1.56
40064--40125	27	2.4	25	84	12	65	38	4	0	56	1.21
40071--40146	27	2.6	29	81	14	93	38	5	1	55	1.31
41345--41393	23	2.1	23	88	0	71	48	8	18	24	1.75
41350--41400	23	2.2	23	82	0	57	45	11	17	25	1.83
53025--53049	12	2.1	12	100	0	50	16	24	28	32	1.96
53087--53131	21	2.1	21	88	8	65	26	35	28	8	1.87
64414--64443	2	15.0	2	92	0	51	53	0	0	46	1.00
77998--78044	18	2.6	18	89	0	67	17	2	36	44	1.60
78004--78044	6	6.8	6	97	0	73	19	0	34	46	1.50

Tables:   1

The End!