genome.fa.s4900.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004900.1 Hibiscus syriacus cultivar Beakdansim tig00011027_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106888

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
721--760	20	2.1	19	86	9	55	65	2	5	27	1.27
1435--1475	19	2.1	19	86	9	55	0	17	7	75	1.02
1882--1911	14	2.2	13	94	5	51	40	0	0	60	0.97
1900--1954	3	17.7	3	85	7	74	61	0	1	36	1.06
4337--4386	25	2.0	25	84	7	66	34	24	22	20	1.97
4371--4468	23	4.3	23	77	1	81	35	24	22	17	1.95
4432--4475	23	1.9	23	90	0	70	31	25	22	20	1.98
4564--4602	16	2.5	16	88	12	55	35	20	10	33	1.86
4626--4675	19	2.9	16	81	16	64	40	20	16	24	1.91
5823--6052	116	2.0	116	92	0	388	33	14	16	36	1.89
10507--10537	15	2.1	15	100	0	62	25	12	32	29	1.93
10673--10724	20	2.6	20	90	0	77	32	15	19	32	1.93
10751--10854	37	2.8	37	86	0	136	43	12	14	29	1.82
11209--11251	18	2.5	17	81	7	52	25	6	2	65	1.30
15830--16183	183	1.9	183	94	1	620	27	20	21	31	1.98
17322--17438	36	3.2	36	77	4	146	26	16	10	47	1.78
17358--17473	36	3.3	35	75	8	126	28	15	9	46	1.77
17306--17537	72	3.2	71	88	6	306	29	17	10	42	1.83
17569--17720	39	3.6	39	68	22	110	27	21	13	36	1.92
17624--17941	104	3.1	104	91	2	509	30	20	11	36	1.89
17841--17916	36	2.1	36	90	0	116	22	21	15	40	1.90
18116--18746	105	6.0	105	90	2	905	33	26	17	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19289--19393	37	2.8	37	83	0	129	40	13	15	30	1.85
19750--19789	18	2.3	18	83	8	57	25	5	2	67	1.23
19795--19821	2	13.5	2	100	0	54	48	0	0	51	1.00
20301--20344	2	22.0	2	100	0	88	50	0	0	50	1.00
22256--22299	18	2.4	19	85	7	56	27	0	6	65	1.17
26048--26114	33	2.0	33	100	0	134	32	8	14	43	1.77
28411--28494	21	4.0	21	95	0	150	33	27	22	16	1.96
29300--29357	20	2.7	20	84	10	62	22	20	24	32	1.98
30653--30704	24	2.2	24	96	0	95	38	25	13	23	1.91
32600--32662	21	3.0	21	92	0	108	34	28	20	15	1.94
33470--33527	20	2.7	20	84	10	62	22	20	24	32	1.98
39502--39568	33	2.0	33	97	0	125	32	10	14	41	1.80
41875--41956	21	3.9	21	96	0	155	35	29	21	13	1.92
42764--42821	20	2.7	20	84	10	62	22	20	24	32	1.98
44117--44168	24	2.2	24	96	0	95	38	25	13	23	1.91
46065--46148	21	4.0	21	92	0	141	35	28	20	15	1.93
46956--47013	20	2.7	20	84	10	62	22	20	24	32	1.98
56785--56826	21	2.0	21	95	0	75	30	14	7	47	1.71
56821--56924	33	3.2	33	93	1	174	31	6	16	45	1.73
57311--57380	32	2.2	32	94	0	122	44	0	22	32	1.53
58098--58192	43	2.2	43	86	3	129	52	17	4	25	1.63
58565--58624	31	2.0	30	96	3	111	26	1	6	65	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61008--61063	29	2.0	28	82	3	67	25	17	8	48	1.76
72253--72297	22	2.0	22	86	8	63	57	0	0	42	0.98
72559--72613	28	2.0	26	82	6	65	52	3	0	43	1.18
73168--73242	3	24.7	3	94	2	132	64	0	0	36	0.94
73377--73659	124	2.3	122	86	6	369	23	18	15	42	1.88
73606--73695	36	2.5	36	100	0	180	20	22	10	47	1.79
73636--73691	17	3.2	16	69	26	51	21	19	12	46	1.83
73641--74460	116	7.1	116	91	3	1085	29	18	13	38	1.89
75289--75765	93	5.1	92	96	1	828	35	20	15	29	1.93
76762--76826	24	2.8	23	77	13	71	1	20	0	78	0.83
76761--76818	30	2.0	29	86	10	82	0	20	0	79	0.74
76766--76826	21	2.8	22	80	11	72	1	19	0	78	0.83
84164--84202	16	2.4	16	91	0	60	46	5	20	28	1.72
88252--88306	28	2.0	26	86	6	74	52	5	0	41	1.24
89483--89526	3	14.7	3	100	0	88	65	0	0	34	0.93
92715--92755	21	1.9	22	90	5	66	24	19	14	41	1.89
98882--98953	31	2.3	32	85	7	94	29	11	23	36	1.89
101318--101380	24	2.6	24	87	0	81	63	6	26	3	1.34
101318--101367	12	4.2	12	81	0	64	66	6	26	2	1.26

Tables:   1

The End!