genome.fa.s4901.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004901.1 Hibiscus syriacus cultivar Beakdansim tig00011028_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63145

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
709--802	33	2.8	33	80	7	109	27	15	2	54	1.53
919--1004	34	2.6	32	84	14	104	25	12	2	59	1.46
717--1129	201	2.1	199	88	2	603	28	19	10	41	1.85
2264--2302	2	19.5	2	100	0	78	48	0	0	51	1.00
2530--2698	85	2.0	84	96	3	313	36	14	8	40	1.76
6921--6962	22	1.9	22	90	9	68	42	16	11	28	1.84
13543--13606	27	2.4	26	82	7	67	60	3	12	23	1.46
14014--14065	21	2.5	21	81	3	61	38	19	25	17	1.93
14054--14147	20	4.7	20	80	7	100	34	24	18	23	1.96
14656--14722	19	3.5	19	85	2	89	47	25	16	10	1.78
14718--14848	19	7.1	19	78	13	112	14	22	19	43	1.87
14723--14823	51	2.0	52	86	2	141	13	22	20	42	1.88
14773--14839	20	3.4	19	87	6	89	14	22	23	38	1.92
14773--14848	40	1.9	39	83	2	98	14	22	21	42	1.89
16982--17051	21	3.3	20	69	9	59	22	40	18	18	1.92
18353--18388	14	2.6	14	95	0	63	30	0	25	44	1.54
18494--18557	33	1.9	33	96	0	119	45	20	23	10	1.82
18494--18560	19	3.8	19	75	18	72	46	19	22	11	1.82
18574--18694	33	3.6	33	85	6	181	14	22	18	44	1.86
20985--21009	12	2.1	12	100	0	50	0	28	0	72	0.86
21184--21237	24	2.2	24	90	0	81	40	20	16	22	1.91
22010--22061	21	2.5	21	87	3	70	38	17	23	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22046--22096	20	2.5	20	77	0	57	39	21	19	19	1.93
22310--22377	20	3.4	20	72	8	75	39	23	20	16	1.91
22294--22397	40	2.9	34	77	15	109	40	22	22	15	1.91
22408--22481	19	4.5	16	83	16	66	13	20	18	47	1.82
22404--22471	19	3.8	19	87	12	101	13	22	17	47	1.82
24084--24143	21	2.9	20	73	11	59	20	13	45	21	1.85
24507--24640	20	7.5	19	70	18	83	44	20	20	14	1.86
24566--24656	14	5.9	14	72	20	65	49	20	17	12	1.78
24550--24661	33	3.4	33	95	1	190	48	20	18	12	1.80
24550--24672	65	1.9	66	88	5	187	47	21	17	12	1.80
24668--24763	19	5.7	18	67	21	73	13	19	19	46	1.83
24690--24747	14	3.9	14	70	16	53	12	17	20	50	1.78
24673--24763	32	2.8	33	89	3	148	13	18	19	48	1.81
24736--24791	20	2.9	19	76	12	60	17	21	21	39	1.93
25284--25328	18	2.5	18	92	0	81	13	13	44	28	1.81
26648--26721	20	3.8	20	81	1	78	44	22	17	14	1.86
26955--26998	22	2.0	22	95	0	79	18	15	45	20	1.85
27166--27300	20	6.7	20	80	7	121	24	17	24	33	1.96
27166--27303	61	2.3	61	85	0	195	23	17	23	34	1.96
27289--27343	20	2.7	21	77	5	58	20	23	16	40	1.91
27646--27709	31	2.1	31	87	0	92	37	7	9	45	1.66
27719--27772	2	27.0	2	100	0	108	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28604--28635	2	16.5	2	93	6	57	50	0	0	50	1.00
29632--29870	116	2.1	116	86	3	329	26	12	5	54	1.60
33708--33744	19	2.0	19	89	5	58	13	0	35	51	1.41
36723--36806	44	1.9	44	95	0	150	25	14	15	45	1.84
39791--39846	8	7.0	8	93	0	85	28	10	25	35	1.89
39800--39849	4	12.5	4	78	0	55	30	6	24	40	1.79
40410--40501	21	4.4	21	98	0	175	50	22	9	17	1.75
41338--41407	35	2.0	35	82	0	86	27	14	22	35	1.93
41373--41597	43	5.3	43	80	5	192	36	18	18	27	1.94
41372--41536	84	1.9	86	82	4	210	32	20	20	27	1.97
41377--41597	41	5.3	42	81	2	124	35	18	18	27	1.94
41580--41850	80	3.3	80	82	4	319	33	19	17	29	1.94
41655--41789	40	3.3	41	69	19	113	30	19	20	30	1.97
49093--49165	23	3.2	22	79	11	76	46	16	23	13	1.82
49106--49175	23	3.0	24	79	8	83	51	17	20	11	1.75
57156--57196	18	2.3	18	86	0	55	43	24	26	4	1.74
60049--60115	28	2.3	29	85	7	84	71	7	1	19	1.17
60074--60111	21	1.9	20	89	10	60	71	7	0	21	1.11

Tables:   1

The End!