Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004903.1 Hibiscus syriacus cultivar Beakdansim tig00011032_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69077

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9171--9227
28
1.9
28
86
10
78
66
1
1
29
1.12
9169--9222
19
3.0
17
75
19
56
68
1
1
27
1.10
9215--9277
23
2.7
24
82
4
67
66
1
9
22
1.29
13350--13376
2
13.5
2
100
0
54
0
51
0
48
1.00
15740--15795
23
2.4
23
90
3
85
21
30
10
37
1.87
20669--20712
3
14.7
3
85
0
61
2
27
0
70
0.99
28463--28489
2
13.5
2
100
0
54
51
0
0
48
1.00
29383--29438
24
2.3
24
100
0
112
28
17
16
37
1.91
31154--31196
19
2.3
19
87
0
59
55
11
0
32
1.36
33567--33599
17
2.0
17
88
5
50
39
0
0
60
0.97
36538--36576
14
2.6
16
80
19
57
53
0
0
46
1.00
45350--45377
13
2.2
13
100
0
56
50
0
0
50
1.00
49180--49207
3
9.3
3
100
0
56
67
0
0
32
0.91
49478--49563
44
2.0
44
85
0
118
23
12
24
39
1.89
50111--50140
16
1.9
15
93
6
51
53
0
0
46
1.00
50365--50419
20
2.8
20
94
0
92
40
9
25
25
1.85
52958--52983
6
4.3
6
100
0
52
50
0
0
50
1.00
55192--55450
95
2.7
95
83
4
317
33
18
17
31
1.94
56556--57064
84
6.2
84
77
5
477
30
24
20
24
1.99
56594--57099
164
3.1
164
82
3
559
31
24
20
24
1.98
57107--57367
37
7.4
36
75
12
231
26
20
12
40
1.88
57420--57548
36
3.6
36
89
1
195
44
18
7
29
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57091--57470
176
2.2
172
76
8
408
30
19
11
38
1.87
61488--61538
19
2.7
19
96
0
93
25
29
21
23
1.99
61629--61695
20
3.3
20
79
4
89
40
17
22
19
1.92
61626--61721
41
2.3
41
96
0
174
39
16
23
19
1.92
61629--61721
20
4.6
20
75
4
87
38
17
24
19
1.92
61710--61804
20
4.7
20
80
2
91
34
24
17
23
1.96
61707--61784
41
1.9
41
86
0
111
39
21
16
21
1.92
61992--62035
22
2.0
22
95
0
79
20
45
15
18
1.85
62299--62336
20
1.9
20
88
0
58
13
15
21
50
1.78
63646--63690
18
2.5
18
85
0
63
26
42
15
15
1.87
64236--64272
14
2.6
14
91
0
65
45
24
0
29
1.53
65625--65691
21
3.2
21
68
4
55
19
20
35
23
1.95
65625--65747
42
2.9
41
80
7
113
22
17
36
22
1.95
67739--67898
20
8.8
18
68
19
84
43
22
21
12
1.86
67763--67861
33
3.0
33
89
1
144
39
26
23
11
1.88
67739--67903
19
9.1
19
73
16
127
42
22
22
12
1.87
67899--67982
19
4.4
19
89
1
114
10
17
25
46
1.80
68493--68544
20
2.6
20
87
6
70
25
17
28
28
1.97
68553--68645
21
4.5
21
72
10
84
18
22
18
40
1.91
68537--68648
40
2.8
41
90
5
183
18
20
17
42
1.89

Tables:   1

The End!