genome.fa.s4904.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004904.1 Hibiscus syriacus cultivar Beakdansim tig00011033_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69577

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
265--307	20	2.1	21	86	4	61	39	11	2	46	1.53
1249--1575	44	7.6	41	79	10	284	30	20	16	32	1.95
1249--1568	87	3.7	83	81	8	315	30	21	15	32	1.94
3236--3296	29	2.0	31	90	6	99	63	3	21	11	1.41
4597--5110	137	3.8	138	80	4	558	28	11	14	45	1.80
5416--5452	19	1.9	19	100	0	74	24	0	5	70	1.08
7377--7586	65	3.2	64	78	9	203	31	23	17	26	1.97
9647--9697	18	2.8	18	96	0	93	37	9	7	45	1.67
12990--13086	44	2.2	44	83	10	119	28	21	21	27	1.99
14503--14537	18	1.9	18	88	0	52	28	42	2	25	1.69
15443--15475	15	2.3	15	94	5	59	33	6	0	60	1.21
15824--15977	64	2.4	63	84	6	186	33	20	15	30	1.94
16947--17465	137	3.8	137	79	4	519	27	10	14	46	1.78
17768--17805	19	2.0	19	94	0	67	26	0	2	71	1.00
19745--20254	139	3.7	136	80	4	547	26	12	15	45	1.82
20569--20609	19	2.1	20	90	4	66	24	0	4	70	1.06
24824--24883	19	2.9	20	85	9	68	16	26	35	21	1.95
28684--28723	21	1.9	21	85	10	55	35	10	2	52	1.48
31236--31260	13	1.9	13	100	0	50	56	8	4	32	1.47
32652--32681	13	2.3	13	100	0	60	50	0	0	50	1.00
36386--36429	23	1.9	23	90	9	72	29	13	4	52	1.60
37289--37318	3	10.0	3	100	0	60	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37613--37646	17	2.0	17	88	11	52	20	5	5	67	1.33
37815--37921	4	26.8	4	100	0	214	25	49	0	25	1.50
38835--38900	14	5.3	13	77	20	54	10	13	22	53	1.71
38812--38899	34	2.6	34	83	3	97	12	14	22	50	1.77
38842--38910	34	2.0	34	94	0	120	14	11	17	56	1.67
38850--38886	10	3.7	10	88	0	56	13	10	18	56	1.66
38865--38920	24	2.3	24	81	0	67	16	10	14	58	1.62
39769--39810	12	3.6	12	75	18	52	30	26	21	21	1.98
39772--39822	23	2.2	23	100	0	102	33	27	17	21	1.96
40031--40107	16	4.8	16	93	0	136	7	14	23	54	1.66
49977--50001	3	8.3	3	100	0	50	68	0	0	32	0.90
50110--50152	22	2.0	22	86	9	61	37	13	2	46	1.57
50146--50174	2	14.5	2	100	0	58	48	0	0	51	1.00
50195--50328	20	7.4	19	77	18	135	43	11	0	45	1.39
52982--53052	23	3.1	23	85	0	97	39	8	15	36	1.78
53220--53731	199	2.6	199	86	4	676	29	14	15	40	1.86
54046--54104	25	2.4	25	100	0	118	20	23	22	33	1.97
55993--56028	18	2.0	18	88	0	54	22	25	5	47	1.73
57517--58677	200	5.8	200	84	4	1394	31	16	14	37	1.89
57560--58677	402	2.8	398	84	4	1414	31	16	14	37	1.89
57560--58677	602	1.9	600	90	2	1796	31	16	14	37	1.89
60605--60640	18	2.0	18	88	0	54	2	33	0	63	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60827--60893	33	2.0	33	94	0	116	23	44	0	31	1.54
61053--61100	15	3.2	15	96	0	87	14	62	4	18	1.47
63391--63879	183	2.7	183	88	1	714	26	16	14	41	1.87
65770--66284	3	176.3	3	90	9	827	0	32	0	67	0.91
69427--69531	49	2.3	48	84	12	132	52	9	1	36	1.45

Tables:   1

The End!