genome.fa.s4905.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004905.1 Hibiscus syriacus cultivar Beakdansim tig00011034_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84868

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5406--5513	33	3.2	34	77	16	93	36	0	3	60	1.15
5427--5515	32	2.8	30	76	11	79	39	0	2	58	1.11
7228--7275	21	2.3	21	85	0	60	25	39	12	22	1.89
7279--7346	21	3.2	21	89	6	102	19	36	25	19	1.94
7861--7967	34	3.1	34	86	0	151	57	3	3	35	1.35
14670--14738	29	2.4	29	95	0	120	21	30	28	18	1.97
18825--18885	11	5.9	11	74	16	51	32	1	1	63	1.13
19207--19384	57	3.1	57	89	0	266	33	33	6	26	1.81
19972--20014	16	2.8	15	79	13	52	60	0	2	37	1.10
30347--30396	2	25.0	2	93	0	82	52	2	0	46	1.12
37256--37338	43	1.9	43	97	0	157	28	9	14	46	1.76
42481--42517	16	2.3	16	100	0	74	8	40	5	45	1.56
53250--53301	24	2.2	24	82	0	59	36	21	21	21	1.95
56189--56216	14	2.0	14	100	0	56	64	14	14	7	1.48
62880--63029	20	7.6	20	69	16	89	33	24	13	29	1.93
63921--63974	24	2.2	24	96	0	99	20	16	20	42	1.89
66539--66588	20	2.5	20	90	0	82	44	24	18	14	1.86
67107--67157	24	2.1	24	88	0	75	33	3	15	47	1.64
67468--67554	39	2.2	39	93	4	149	48	18	14	18	1.82
67728--67770	20	2.2	20	95	0	77	44	25	16	13	1.85
69422--69517	21	4.6	21	76	8	97	23	17	35	22	1.95
69422--69517	42	2.3	42	82	7	122	23	17	35	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71672--71709	20	1.9	20	94	0	67	50	21	18	10	1.76
71918--71965	14	3.4	14	72	11	53	68	2	8	20	1.26
71914--71971	28	2.1	28	93	0	107	70	3	6	18	1.24
72217--72260	20	2.2	20	87	0	61	22	18	18	40	1.91
74098--74138	6	7.2	6	86	8	59	17	31	17	34	1.93
75269--75314	22	2.1	22	84	4	58	71	8	2	17	1.21
77383--77446	13	4.9	13	72	10	51	35	1	1	60	1.15
77922--77983	27	2.4	24	75	17	61	19	24	9	46	1.79
83481--83530	23	2.2	23	81	0	55	38	32	8	22	1.83

Tables:   1

The End!