Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004909.1 Hibiscus syriacus cultivar Beakdansim tig00011044_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69112

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1283--1332
21
2.5
21
90
6
77
32
12
8
48
1.69
10288--10321
17
2.0
17
88
0
50
41
17
0
41
1.50
12458--12507
24
2.1
24
84
0
64
38
12
16
34
1.85
17388--17425
14
2.6
15
79
8
51
76
5
15
2
1.08
17394--17434
11
3.9
11
75
12
50
78
2
17
2
0.98
17580--17612
16
1.9
18
88
11
52
12
15
0
72
1.12
18502--18541
19
2.0
20
85
4
55
62
0
15
22
1.32
24094--24133
19
2.0
20
85
4
55
62
0
15
22
1.32
30780--30830
20
2.6
20
93
3
86
33
11
7
47
1.69
31549--31581
5
6.6
5
86
13
50
81
0
18
0
0.68
31537--31581
15
2.9
15
78
18
56
77
0
20
2
0.87
33305--33347
15
2.9
15
82
3
61
86
9
4
0
0.71
33314--33383
19
3.5
20
78
21
83
80
11
8
0
0.92
38907--38958
21
2.6
21
90
6
81
32
13
7
46
1.72
39675--39746
34
2.2
31
85
11
92
73
4
16
5
1.18
42873--42922
21
2.5
21
90
6
77
32
12
8
48
1.69
45358--45406
18
2.8
17
81
9
53
77
6
14
2
1.05
45371--45410
21
1.9
21
85
10
55
75
5
15
5
1.15
49423--49479
13
4.7
12
74
18
55
80
1
17
0
0.79
49424--49479
22
2.7
21
79
17
64
80
1
17
0
0.80
51944--51977
17
2.0
17
88
0
50
41
17
0
41
1.50
54116--54165
24
2.1
24
84
0
64
38
12
16
34
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60602--60642
19
2.1
20
90
4
66
39
7
12
41
1.70
61289--61342
24
2.2
24
100
0
108
44
16
16
22
1.86
63371--63430
30
2.0
31
83
3
77
26
8
10
55
1.61
64271--64321
20
2.6
20
90
3
77
35
15
5
43
1.71
65194--65248
23
2.3
25
81
6
69
61
10
16
10
1.55
66889--67044
11
13.2
11
72
23
106
28
3
36
32
1.73
66906--67009
23
4.4
23
67
27
74
28
3
36
30
1.75
66872--67047
36
4.9
36
95
1
302
28
3
36
31
1.76

Tables:   1

The End!