genome.fa.s491.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000491.1 Hibiscus syriacus cultivar Beakdansim tig00000935_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94263

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
865--891	3	9.0	3	100	0	54	0	33	0	66	0.92
26258--26295	18	2.1	18	100	0	76	15	50	5	28	1.66
27830--27893	7	9.1	7	100	0	128	42	0	43	14	1.45
28256--28322	20	3.2	21	77	14	59	38	1	2	56	1.24
28314--28385	30	2.5	30	81	4	85	37	13	0	48	1.43
28287--28385	28	3.5	28	77	4	92	38	11	0	50	1.38
28466--28531	30	2.2	30	89	5	98	59	0	4	36	1.18
28710--28760	21	2.4	21	80	6	68	21	23	19	35	1.96
28750--28801	21	2.5	21	87	3	70	38	17	23	21	1.93
28790--28924	20	6.7	20	86	5	155	31	26	19	22	1.98
28787--28899	41	2.8	42	87	4	151	31	27	18	22	1.97
29666--29719	24	2.2	24	87	6	74	22	14	20	42	1.88
33881--33941	21	2.9	21	73	9	70	21	13	42	22	1.87
33854--33945	42	2.2	41	86	1	130	20	14	42	22	1.88
34352--34430	19	4.4	19	72	18	71	45	22	18	12	1.84
34456--34503	20	2.4	20	86	6	62	14	22	25	37	1.92
35038--35085	18	2.7	18	93	0	87	14	12	45	27	1.81
36434--36471	20	1.9	20	100	0	76	31	26	21	21	1.98
36716--36759	22	2.0	22	90	0	70	20	15	43	20	1.88
36946--37052	20	5.3	20	81	6	108	25	17	25	31	1.97
36919--37054	41	3.3	41	79	6	159	25	16	23	34	1.95
36979--37074	41	2.3	41	85	3	122	19	20	23	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37083--37135	21	2.5	22	81	6	74	33	18	26	20	1.96
37333--37432	30	3.5	28	71	17	89	59	1	2	38	1.16
37660--37731	10	6.5	10	73	17	54	65	18	4	12	1.41
37689--37787	23	4.5	22	70	14	78	58	19	8	14	1.60
37899--37935	17	2.2	18	85	9	51	32	0	16	51	1.45
41906--41930	13	1.9	13	100	0	50	32	4	0	64	1.12
45947--46079	20	6.5	21	66	17	64	36	23	16	23	1.94
46010--46244	20	11.6	20	79	8	208	38	24	18	18	1.93
46071--46243	40	4.3	41	86	3	235	36	24	19	18	1.94
46712--46790	20	3.9	21	83	5	85	51	16	18	12	1.75
46712--46833	20	6.5	19	73	13	83	49	20	18	11	1.78
46829--46974	19	8.1	19	70	19	116	12	23	19	44	1.84
46874--46925	14	3.4	14	72	23	50	9	25	23	42	1.84
46851--46925	33	2.3	33	90	4	116	12	24	21	42	1.86
46874--46946	33	2.2	34	92	2	121	10	24	23	41	1.86
48985--49051	21	3.2	21	66	6	55	25	35	19	19	1.95
50403--50438	14	2.6	14	95	0	63	33	0	22	44	1.53
50545--50638	33	2.8	32	88	3	125	45	21	19	13	1.84
50577--50653	19	4.3	19	80	15	92	45	24	15	14	1.83
50717--50799	33	2.5	33	78	2	85	16	21	18	43	1.88
50783--50856	20	3.7	20	66	16	53	28	17	20	33	1.95
54267--54410	74	1.9	75	90	1	227	17	18	22	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54242--54449	41	5.3	40	82	7	239	19	19	22	38	1.93
54245--54449	20	10.4	20	76	10	154	19	19	22	38	1.94
54340--54471	41	3.2	41	87	5	135	20	17	25	37	1.94
54340--54472	61	2.2	61	82	5	153	21	17	24	36	1.94
54462--54510	20	2.5	20	90	6	73	14	16	24	44	1.84
66609--66650	21	2.1	20	86	8	59	21	23	23	30	1.99
66617--66659	21	2.0	21	86	0	59	23	23	25	27	2.00
67486--67565	19	4.0	19	79	9	88	33	25	18	22	1.97
67498--67649	42	3.7	42	75	5	141	36	21	19	22	1.95
67606--67655	21	2.4	21	96	0	91	32	26	24	18	1.97
67449--67649	61	3.2	61	80	8	226	36	21	18	22	1.95
67477--67655	42	4.3	43	74	6	131	35	22	19	21	1.96
69400--69485	37	2.3	38	78	15	106	45	0	3	51	1.18
73307--73340	7	4.7	7	88	3	50	82	2	11	2	0.89
77681--77742	30	2.1	30	84	6	81	14	29	14	41	1.85
80056--80146	44	2.1	44	100	0	182	39	25	13	21	1.90
90987--91017	16	1.9	16	93	0	53	80	0	3	16	0.83
91784--91829	21	2.2	21	88	0	65	43	4	21	30	1.72
92137--92206	32	2.2	32	89	0	104	41	11	11	35	1.77
92893--92959	20	3.3	20	100	0	134	17	28	11	41	1.85

Tables:   1

The End!