Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004911.1 Hibiscus syriacus cultivar Beakdansim tig00011060_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 136175
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
Found at i:188 original size:17 final size:17
Alignment explanation
Indices: 152--191 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
142 TGATCGACTA
* *
152 TTGACCGTTGACCTGTG
1 TTGACCGTTGACCGGCG
*
169 TTGACCGTTGAGCGGCG
1 TTGACCGTTGACCGGCG
186 TTGACC
1 TTGACC
192 ACAGTTGACC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.12, C:0.25, G:0.33, T:0.30
Consensus pattern (17 bp):
TTGACCGTTGACCGGCG
Found at i:1004 original size:17 final size:18
Alignment explanation
Indices: 969--1005 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
959 GGATTAATAA
969 ATCTGAAAAGACATATTG
1 ATCTGAAAAGACATATTG
987 ATCTGATAAA-AC-TATTG
1 ATCTGA-AAAGACATATTG
1004 AT
1 AT
1006 GTCATAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.39
18 8 0.44
19 3 0.17
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.32
Consensus pattern (18 bp):
ATCTGAAAAGACATATTG
Found at i:2641 original size:12 final size:13
Alignment explanation
Indices: 2622--2663 Score: 54
Period size: 12 Copynumber: 3.5 Consensus size: 13
2612 TCTGATATGG
2622 ATTCTGTTTTGAT
1 ATTCTGTTTTGAT
*
2635 ATT-TGTTCTGA-
1 ATTCTGTTTTGAT
2646 ATTCTGTTTTGAT
1 ATTCTGTTTTGAT
2659 -TTCTG
1 ATTCTG
2664 ATATTTCCGT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
11 3 0.12
12 19 0.76
13 3 0.12
ACGTcount: A:0.14, C:0.10, G:0.17, T:0.60
Consensus pattern (13 bp):
ATTCTGTTTTGAT
Found at i:4847 original size:154 final size:157
Alignment explanation
Indices: 4648--4954 Score: 575
Period size: 154 Copynumber: 2.0 Consensus size: 157
4638 CATGCGCCAC
4648 CCCCGAGAGTGAGCATCGTTTGGGGTGTTAATTTTGTAATTAATTTCTGTTTGGGTGATATTTGT
1 CCCCGAGAGTGAGCATCGTTTGGGGTGTTAATTTTGTAATTAATTTCTGTTTGGGTGATATTTGT
4713 GTAAAATTTGGGTGTTAGTTTCGTAAATATTTACAGAAGGTGGCTAATTTTGTAATTAATTTATG
66 GTAAAATTTGGGTGTTAGTTTCGTAAATATTTACAGAAGGTGGCTAATTTTGTAATTAATTTATG
4778 TTAGGGT-ATATTTGTATAAAATATCA
131 TTAGGGTGATATTTGTATAAAATATCA
*
4804 CCCCGAGAGTGAGCATCG-TT-GGGTGTTAATTTTGTAATTAATTTCTGTTTGGGTGCTATTTGT
1 CCCCGAGAGTGAGCATCGTTTGGGGTGTTAATTTTGTAATTAATTTCTGTTTGGGTGATATTTGT
4867 GTAAAATTTGGGTGTTAGTTTCGTAAATATTTACAGAAGGTGGCTAATTTTGTAATTAATTTATG
66 GTAAAATTTGGGTGTTAGTTTCGTAAATATTTACAGAAGGTGGCTAATTTTGTAATTAATTTATG
*
4932 TTAGGGTGATATTTGTGTAAAAT
131 TTAGGGTGATATTTGTATAAAAT
4955 GGTCGACTGT
Statistics
Matches: 148, Mismatches: 2, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
154 114 0.77
155 16 0.11
156 18 0.12
ACGTcount: A:0.26, C:0.07, G:0.24, T:0.43
Consensus pattern (157 bp):
CCCCGAGAGTGAGCATCGTTTGGGGTGTTAATTTTGTAATTAATTTCTGTTTGGGTGATATTTGT
GTAAAATTTGGGTGTTAGTTTCGTAAATATTTACAGAAGGTGGCTAATTTTGTAATTAATTTATG
TTAGGGTGATATTTGTATAAAATATCA
Found at i:5799 original size:17 final size:18
Alignment explanation
Indices: 5764--5800 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
5754 GGATTAATAA
5764 ATCTGAAAAGACATATTG
1 ATCTGAAAAGACATATTG
5782 ATCTGATAAA-AC-TATTG
1 ATCTGA-AAAGACATATTG
5799 AT
1 AT
5801 GTGCATAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.39
18 8 0.44
19 3 0.17
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.32
Consensus pattern (18 bp):
ATCTGAAAAGACATATTG
Found at i:7424 original size:12 final size:12
Alignment explanation
Indices: 7409--7473 Score: 62
Period size: 12 Copynumber: 5.4 Consensus size: 12
7399 ATGACCTGAA
*
7409 TTCTGTTCTGAT
1 TTCTGTTTTGAT
* *
7421 TTCTGATATGGA-
1 TTCTG-TTTTGAT
7433 TTCTGTTTTGAT
1 TTCTGTTTTGAT
*
7445 ATCTGTTTTGAAT
1 TTCTGTTTTG-AT
7458 TT-TGTTTTGAT
1 TTCTGTTTTGAT
7469 TTCTG
1 TTCTG
7474 ATATTTTCGT
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
11 8 0.19
12 28 0.67
13 6 0.14
ACGTcount: A:0.14, C:0.09, G:0.18, T:0.58
Consensus pattern (12 bp):
TTCTGTTTTGAT
Found at i:7435 original size:24 final size:24
Alignment explanation
Indices: 7405--7477 Score: 92
Period size: 24 Copynumber: 3.0 Consensus size: 24
7395 ATACATGACC
*
7405 TGAATTCTGTTCTGATTTCTGATA
1 TGAATTCTGTTTTGATTTCTGATA
* * * *
7429 TGGATTCTGTTTTGATATCTGTTT
1 TGAATTCTGTTTTGATTTCTGATA
*
7453 TGAATTTTGTTTTGATTTCTGATA
1 TGAATTCTGTTTTGATTTCTGATA
7477 T
1 T
7478 TTTCGTTTAC
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.18, C:0.08, G:0.18, T:0.56
Consensus pattern (24 bp):
TGAATTCTGTTTTGATTTCTGATA
Found at i:26057 original size:46 final size:46
Alignment explanation
Indices: 25977--26073 Score: 113
Period size: 46 Copynumber: 2.1 Consensus size: 46
25967 GAGTCGAGGA
* * * *
25977 TTCTACGCAGTCTTTCGGGACAATTCTATATGGTCCTTCGAGATAT
1 TTCTACGCAGTCCTTCAGGACAATACTATATGGTCCTTCGAGACAT
* * * * *
26023 TTCTACGCGGTCCTTCAGGATAATACTATGTGGTCTTTCGTGACAT
1 TTCTACGCAGTCCTTCAGGACAATACTATATGGTCCTTCGAGACAT
26069 TTCTA
1 TTCTA
26074 TGTGGCACTT
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.38
Consensus pattern (46 bp):
TTCTACGCAGTCCTTCAGGACAATACTATATGGTCCTTCGAGACAT
Found at i:26074 original size:23 final size:22
Alignment explanation
Indices: 25994--26086 Score: 62
Period size: 23 Copynumber: 4.1 Consensus size: 22
25984 CAGTCTTTCG
*
25994 GGACAATTCTATATGGTCCTTC
1 GGACAATTCTATGTGGTCCTTC
* * * *
26016 GAGATATTTCTACGCGGTCCTTC
1 G-GACAATTCTATGTGGTCCTTC
* * *
26039 AGGATAATACTATGTGGTCTTTC
1 -GGACAATTCTATGTGGTCCTTC
*
26062 GTGACATTTCTATGTGG-CACTTC
1 G-GACAATTCTATGTGGTC-CTTC
26085 GG
1 GG
26087 TGCAATTTAT
Statistics
Matches: 53, Mismatches: 14, Indels: 8
0.71 0.19 0.11
Matches are distributed among these distances:
22 4 0.08
23 48 0.91
24 1 0.02
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (22 bp):
GGACAATTCTATGTGGTCCTTC
Found at i:26216 original size:6 final size:6
Alignment explanation
Indices: 26205--26241 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
26195 ATGAATAGTG
* *
26205 AATGAT AATGAT AATGAT AGTGAT AATGAT GATGAT A
1 AATGAT AATGAT AATGAT AATGAT AATGAT AATGAT A
26242 TATATATATA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.46, C:0.00, G:0.22, T:0.32
Consensus pattern (6 bp):
AATGAT
Found at i:27958 original size:13 final size:13
Alignment explanation
Indices: 27942--27971 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
27932 GGTGCATGGA
27942 TGCACTGCAGGGG
1 TGCACTGCAGGGG
*
27955 TGCACTGCATGGG
1 TGCACTGCAGGGG
27968 TGCA
1 TGCA
27972 TGGATGCACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.23, G:0.40, T:0.20
Consensus pattern (13 bp):
TGCACTGCAGGGG
Found at i:28227 original size:21 final size:21
Alignment explanation
Indices: 28203--28242 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
28193 ATGTTTAATG
28203 AAAAAGATACCAATTGTTAAC
1 AAAAAGATACCAATTGTTAAC
* *
28224 AAAATGATATCAATTGTTA
1 AAAAAGATACCAATTGTTA
28243 CCAATTCTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.50, C:0.10, G:0.10, T:0.30
Consensus pattern (21 bp):
AAAAAGATACCAATTGTTAAC
Found at i:29380 original size:19 final size:21
Alignment explanation
Indices: 29344--29391 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
29334 TCTAAATCCT
*
29344 TTTTCAAAATTTCA-TTTTGC
1 TTTTCAAAATTCCATTTTTGC
29364 TTTTCAAAA-TCCATTTTTGC
1 TTTTCAAAATTCCATTTTTGC
29384 -TTTCAAAA
1 TTTTCAAAA
29392 GAAAATTGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 11 0.42
20 15 0.58
ACGTcount: A:0.29, C:0.17, G:0.04, T:0.50
Consensus pattern (21 bp):
TTTTCAAAATTCCATTTTTGC
Found at i:30760 original size:21 final size:21
Alignment explanation
Indices: 30734--30791 Score: 98
Period size: 21 Copynumber: 2.8 Consensus size: 21
30724 AGTAGTGGCA
*
30734 GGTGCATGGATGCACTGCAGG
1 GGTGCATGGATGCACTACAGG
30755 GGTGCATGGATGCACTACAGG
1 GGTGCATGGATGCACTACAGG
*
30776 AGTGCATGGATGCACT
1 GGTGCATGGATGCACT
30792 TTGACACCCT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.22, C:0.19, G:0.38, T:0.21
Consensus pattern (21 bp):
GGTGCATGGATGCACTACAGG
Found at i:31005 original size:19 final size:19
Alignment explanation
Indices: 30970--31007 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
30960 TGATTATTTT
30970 ATTATTATTTTATTTAGAA
1 ATTATTATTTTATTTAGAA
30989 ATTAGTTATTTTA-TTAGAA
1 ATTA-TTATTTTATTTAGAA
31008 CTATTGATAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.37, C:0.00, G:0.08, T:0.55
Consensus pattern (19 bp):
ATTATTATTTTATTTAGAA
Found at i:31167 original size:19 final size:20
Alignment explanation
Indices: 31143--31181 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
31133 ATTGAAGTTC
*
31143 TACTTTTCTTTCA-TATTTT
1 TACTTTTCTCTCATTATTTT
31162 TACTTTTCTCTCATTATTTT
1 TACTTTTCTCTCATTATTTT
31182 CTTTTCATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.15, C:0.18, G:0.00, T:0.67
Consensus pattern (20 bp):
TACTTTTCTCTCATTATTTT
Found at i:31699 original size:20 final size:20
Alignment explanation
Indices: 31670--31708 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
31660 AAAGCCCATA
*
31670 TAGGATCATATAGATGCATT
1 TAGGAGCATATAGATGCATT
*
31690 TAGGAGCATATAGTTGCAT
1 TAGGAGCATATAGATGCAT
31709 GTGGTGGATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.33
Consensus pattern (20 bp):
TAGGAGCATATAGATGCATT
Found at i:41839 original size:25 final size:26
Alignment explanation
Indices: 41801--41851 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
41791 CACATAAATG
41801 TTAATATTATTAATA-ATTTATTTTTT
1 TTAATATTATTAATATA-TTATTTTTT
*
41827 TTAAT-TTTTTAATATATTATTTTTT
1 TTAATATTATTAATATATTATTTTTT
41852 AATAGCTCGC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (26 bp):
TTAATATTATTAATATATTATTTTTT
Found at i:43843 original size:25 final size:26
Alignment explanation
Indices: 43792--43845 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 26
43782 TGATAAAATA
* * *
43792 AAATAAAATAAAAATATTCAAAGTTT
1 AAATAAAATAAAAATAATAAAAATTT
*
43818 AAATAAAA-ATAAATAATAAAAATTT
1 AAATAAAATAAAAATAATAAAAATTT
43843 AAA
1 AAA
43846 AATTAATTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.28
Consensus pattern (26 bp):
AAATAAAATAAAAATAATAAAAATTT
Found at i:44239 original size:3 final size:3
Alignment explanation
Indices: 44233--44310 Score: 65
Period size: 3 Copynumber: 26.7 Consensus size: 3
44223 TTTATTATCG
* * * *
44233 TTA TTA TTA TT- TTA TTTG TTA CTA TTA TTA TT- TTA TAA TCA -TA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
44276 TTA TTA TTA TT- TATA TTA TTA ATA TTA TTA TTA TT
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TT
44311 TACATTACAG
Statistics
Matches: 60, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
2 6 0.10
3 51 0.85
4 3 0.05
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:44258 original size:18 final size:20
Alignment explanation
Indices: 44222--44261 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 20
44212 CATCCATTTG
*
44222 TTTTATTATCGTTATTATTA
1 TTTTATTATCGTTACTATTA
44242 TTTTATT-T-GTTACTATTA
1 TTTTATTATCGTTACTATTA
44260 TT
1 TT
44262 ATTTTATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 11 0.58
19 1 0.05
20 7 0.37
ACGTcount: A:0.23, C:0.05, G:0.05, T:0.68
Consensus pattern (20 bp):
TTTTATTATCGTTACTATTA
Found at i:45825 original size:2 final size:2
Alignment explanation
Indices: 45820--45850 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
45810 TTTTATAAAT
45820 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
45851 TTAATTATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:46918 original size:16 final size:17
Alignment explanation
Indices: 46875--46918 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
46865 AATTTCTATT
46875 TTATTTTATTTTAGTCA
1 TTATTTTATTTTAGTCA
* * *
46892 TTAGTTAATTTT-GTTA
1 TTATTTTATTTTAGTCA
46908 TTATTTTATTT
1 TTATTTTATTT
46919 ATGAATATGA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
16 12 0.55
17 10 0.45
ACGTcount: A:0.23, C:0.02, G:0.07, T:0.68
Consensus pattern (17 bp):
TTATTTTATTTTAGTCA
Found at i:47032 original size:4 final size:4
Alignment explanation
Indices: 47023--47051 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
47013 AATATAGTAC
47023 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
47052 GTTTTATTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:47658 original size:122 final size:123
Alignment explanation
Indices: 47362--47680 Score: 365
Period size: 123 Copynumber: 2.6 Consensus size: 123
47352 TCGATGGATC
* ** *
47362 AACATTTCCAGAGGAAGTTCATAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATG
1 AACATTTACAGAAAAAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATG
* * * * * *
47427 AGAAGAATTTGTTCAACCTTTTGCTCGACTCTATCACAGAAGGAGATAGATCAACACC
66 AGAAGAACTTATTCAACCTTTTGCTCGACTCTATCACACAAGGAGATACAACAACACA
* * * * *
47485 AACATTTCCAGAAAAAGTTTGTAATAAGAAGAACTTATCTGAAGAGAAAGAAGAAGTTCATAATT
1 AACATTTACAGAAAAAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATG
* * ** * ** *
47550 TGAAGAACTTATTCAACCTTTTGCTC-A-TTTCATTGCACATGGAGATACAACAGTATA
66 AGAAGAACTTATTCAACCTTTTGCTCGACTCT-ATCACACAAGGAGATACAACAACACA
** *
47607 AACATTTACAGAATGAGTTCGTAATAAGAAGAACTCA-CTTGAAGAGGAAGAAGAAATTCATAAT
1 AACATTTACAGAAAAAGTTCGTAATAAGAAGAACTCATC-TGAAGAGGAAGAAGAAGTTCATAAT
47671 GAGAAGAACT
65 GAGAAGAACT
47681 CATCCGAAGG
Statistics
Matches: 164, Mismatches: 30, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
121 3 0.02
122 80 0.49
123 81 0.49
ACGTcount: A:0.42, C:0.14, G:0.18, T:0.25
Consensus pattern (123 bp):
AACATTTACAGAAAAAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATG
AGAAGAACTTATTCAACCTTTTGCTCGACTCTATCACACAAGGAGATACAACAACACA
Found at i:49762 original size:122 final size:123
Alignment explanation
Indices: 49480--49784 Score: 407
Period size: 122 Copynumber: 2.5 Consensus size: 123
49470 TTTCCTGAGG
* * *
49480 AAGTTCATAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTC
1 AAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTATTC
* * * * *
49545 AACCTTTTGCTCGATTCTATCACAGAAGGAGATAGATCAGCACCAACATTTCCAGAAA
66 AACCTTTTGCTCGATTCTATCACACAAGGAGATACAACAGCACAAACATTTACAGAAA
* * *
49603 AAGTTCGTAATAAGAAGAACTTATCTGAAGAGAAAGAAGAAGTTCATAATTAGAAGAACTTATTC
1 AAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTATTC
** * * * *
49668 AACCTTTTGCTC-ATT-TCATTGCACATGGAGATACAACAGTATAAACATTTACAGAAT
66 AACCTTTTGCTCGATTCT-ATCACACAAGGAGATACAACAGCACAAACATTTACAGAAA
* * *
49725 GAGTTCGTAATAAGAAGAACTCACCTGAAGAGGAAGAAGAAATTCATAATGAGAAGAACT
1 AAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACT
49785 CATCTGAAGG
Statistics
Matches: 158, Mismatches: 23, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
121 1 0.01
122 86 0.54
123 71 0.45
ACGTcount: A:0.42, C:0.14, G:0.18, T:0.25
Consensus pattern (123 bp):
AAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTATTC
AACCTTTTGCTCGATTCTATCACACAAGGAGATACAACAGCACAAACATTTACAGAAA
Found at i:51061 original size:2 final size:2
Alignment explanation
Indices: 51056--51084 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
51046 TCATATATTC
51056 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
51085 ATCCACGCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:51466 original size:30 final size:31
Alignment explanation
Indices: 51422--51493 Score: 76
Period size: 30 Copynumber: 2.4 Consensus size: 31
51412 AGACCCCTGT
* * *
51422 AACTATCCAGAGGT-CATAAAGAACCTCGG-C
1 AACTGTCCATAGGTCCAT-AAGAACCTAGGTC
* *
51452 AACTGTCCATAGGTCCCTAAGAACCTAGGTG
1 AACTGTCCATAGGTCCATAAGAACCTAGGTC
51483 AACTGTCCATA
1 AACTGTCCATA
51494 TGTTCCTTAG
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
30 22 0.63
31 13 0.37
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.21
Consensus pattern (31 bp):
AACTGTCCATAGGTCCATAAGAACCTAGGTC
Found at i:51572 original size:32 final size:32
Alignment explanation
Indices: 51452--51578 Score: 109
Period size: 31 Copynumber: 4.0 Consensus size: 32
51442 GAACCTCGGC
* * * *
51452 AACTGTCCATA-GGTCCCTAAGAACCTAGGT-G
1 AACTGTCCATATGTTCCAT-AGAACATAGGTAA
*
51483 AACTGTCCATATGTTCCTTAGAACATAGGT-A
1 AACTGTCCATATGTTCCATAGAACATAGGTAA
* * * * *
51514 TACTGTCTATATGTCTCAAAAG-ACATAAGTAA
1 AACTGTCCATATGT-TCCATAGAACATAGGTAA
*
51546 AACTGTCCATATGTTCCGTAGAACATAGGTAA
1 AACTGTCCATATGTTCCATAGAACATAGGTAA
51578 A
1 A
51579 CCATCGACTC
Statistics
Matches: 76, Mismatches: 16, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
31 44 0.58
32 32 0.42
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (32 bp):
AACTGTCCATATGTTCCATAGAACATAGGTAA
Found at i:52323 original size:24 final size:20
Alignment explanation
Indices: 52274--52331 Score: 71
Period size: 20 Copynumber: 2.7 Consensus size: 20
52264 TTCCCATTGA
*
52274 AGTGCATCGGTGCATTCTAC
1 AGTGCATCGATGCATTCTAC
52294 AGTGCATCGATGCATTCTTTAAC
1 AGTGCATCGATGCATTC--T-AC
52317 AGGTGCATCGATGCA
1 A-GTGCATCGATGCA
52332 CTACCATGCA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 16 0.48
22 1 0.03
23 3 0.09
24 13 0.39
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.29
Consensus pattern (20 bp):
AGTGCATCGATGCATTCTAC
Found at i:54773 original size:2 final size:2
Alignment explanation
Indices: 54768--54796 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
54758 TCATATATTC
54768 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
54797 ATCCACGCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:55189 original size:31 final size:31
Alignment explanation
Indices: 55151--55244 Score: 125
Period size: 31 Copynumber: 3.0 Consensus size: 31
55141 ACCTCGACAG
* * * *
55151 CTGTCCATAGGTCCCAAAGAACCTAGGTAAA
1 CTGTCCATATGTTCCATAGAACATAGGTAAA
* *
55182 CTGTCCATATGTTCCTTAGAACATAGGTATA
1 CTGTCCATATGTTCCATAGAACATAGGTAAA
*
55213 CTGTCTATATGTTCCATAGAACATAGGTAAA
1 CTGTCCATATGTTCCATAGAACATAGGTAAA
55244 C
1 C
55245 CCTCGACTCT
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 54 1.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (31 bp):
CTGTCCATATGTTCCATAGAACATAGGTAAA
Found at i:57406 original size:16 final size:17
Alignment explanation
Indices: 57363--57406 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
57353 AATTTCTATT
57363 TTATTTTATTTTAGTCA
1 TTATTTTATTTTAGTCA
* * *
57380 TTAGTTAATTTT-GTTA
1 TTATTTTATTTTAGTCA
57396 TTATTTTATTT
1 TTATTTTATTT
57407 ATGATTATGA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
16 12 0.55
17 10 0.45
ACGTcount: A:0.23, C:0.02, G:0.07, T:0.68
Consensus pattern (17 bp):
TTATTTTATTTTAGTCA
Found at i:59358 original size:35 final size:35
Alignment explanation
Indices: 59314--59388 Score: 123
Period size: 35 Copynumber: 2.1 Consensus size: 35
59304 AACAATCCTT
*
59314 AATTTCATTCTAAACCCCAAATTCCAAAATAATTC
1 AATTTCATTCTAAACCCAAAATTCCAAAATAATTC
* *
59349 AATTTCATTCTAAACCCAAAATTCTAAAATATTTC
1 AATTTCATTCTAAACCCAAAATTCCAAAATAATTC
59384 AATTT
1 AATTT
59389 AAGGTTTAGA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.43, C:0.21, G:0.00, T:0.36
Consensus pattern (35 bp):
AATTTCATTCTAAACCCAAAATTCCAAAATAATTC
Found at i:60041 original size:40 final size:40
Alignment explanation
Indices: 59983--60062 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
59973 TATAAAGAAG
59983 AAATTGGGGGAAAGAGGGTTCCAACCAATACTATTTTGCA
1 AAATTGGGGGAAAGAGGGTTCCAACCAATACTATTTTGCA
*
60023 AAATTGGGGGAAATAGGGTTCCAACCAATACTATTTTGCA
1 AAATTGGGGGAAAGAGGGTTCCAACCAATACTATTTTGCA
60063 GGCAGCCTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (40 bp):
AAATTGGGGGAAAGAGGGTTCCAACCAATACTATTTTGCA
Found at i:66729 original size:23 final size:23
Alignment explanation
Indices: 66703--66754 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
66693 CAAATTTGGG
66703 GGCACCGAAAGTACACAATTAAT
1 GGCACCGAAAGTACACAATTAAT
*
66726 GGCACCGAAAGTGCACAATTAAT
1 GGCACCGAAAGTACACAATTAAT
66749 GGCACC
1 GGCACC
66755 AAAAAGTAGC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.38, C:0.25, G:0.21, T:0.15
Consensus pattern (23 bp):
GGCACCGAAAGTACACAATTAAT
Found at i:69534 original size:30 final size:30
Alignment explanation
Indices: 69471--69536 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
69461 AGAATCGAAA
* * * *
69471 GAACCGGCTGAAAACCGGGAAAATCGGGGT
1 GAACCGACTAAAAACCGGCAAAACCGGGGT
**
69501 GAACCGACTAAAAACCGGCAAAACCGGTTT
1 GAACCGACTAAAAACCGGCAAAACCGGGGT
69531 GAACCG
1 GAACCG
69537 CTAGTTCACT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.36, C:0.24, G:0.29, T:0.11
Consensus pattern (30 bp):
GAACCGACTAAAAACCGGCAAAACCGGGGT
Found at i:69772 original size:25 final size:24
Alignment explanation
Indices: 69744--69814 Score: 79
Period size: 24 Copynumber: 2.9 Consensus size: 24
69734 ACTCAAAAAA
* *
69744 AAAATTAGAAGTTCGATTGAAGCCT
1 AAAATTAG-AGCTCAATTGAAGCCT
*
69769 AAAATTTGAGCTCAATTGAAGCCT
1 AAAATTAGAGCTCAATTGAAGCCT
* * *
69793 AAAATTTGAGTTTAATTGAAGC
1 AAAATTAGAGCTCAATTGAAGC
69815 GAAAGAATAG
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
24 34 0.83
25 7 0.17
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.31
Consensus pattern (24 bp):
AAAATTAGAGCTCAATTGAAGCCT
Found at i:69788 original size:24 final size:24
Alignment explanation
Indices: 69759--69814 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
69749 TAGAAGTTCG
69759 ATTGAAGCCTAAAATTTGAGCTCA
1 ATTGAAGCCTAAAATTTGAGCTCA
* *
69783 ATTGAAGCCTAAAATTTGAGTTTA
1 ATTGAAGCCTAAAATTTGAGCTCA
69807 ATTGAAGC
1 ATTGAAGC
69815 GAAAGAATAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (24 bp):
ATTGAAGCCTAAAATTTGAGCTCA
Found at i:75646 original size:24 final size:26
Alignment explanation
Indices: 75619--75667 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
75609 AGTTATTTTG
*
75619 TTAAAATT-TTA-TTTAGAAAAATAT
1 TTAAAATTATTATTTTAAAAAAATAT
75643 TTAAAATTATTATTTTAAAAAAATA
1 TTAAAATTATTATTTTAAAAAAATA
75668 ATATTTTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 8 0.36
25 3 0.14
26 11 0.50
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (26 bp):
TTAAAATTATTATTTTAAAAAAATAT
Found at i:76093 original size:12 final size:13
Alignment explanation
Indices: 76080--76104 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76070 AATAAATTTT
76080 AATTTTAAAATTA
1 AATTTTAAAATTA
76093 AATTTTAAAATT
1 AATTTTAAAATT
76105 TTATATGCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
AATTTTAAAATTA
Found at i:85877 original size:28 final size:28
Alignment explanation
Indices: 85820--85877 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
85810 AAGCATGGGA
*
85820 CAAAGAAAAAGAAATTGAAATACTTAGT
1 CAAAGAAAAAGAAATTGAAATACCTAGT
*
85848 CAAAGAAAAAGAAATTGAAATACCTGGT
1 CAAAGAAAAAGAAATTGAAATACCTAGT
85876 CA
1 CA
85878 GGGTCGGAGC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.55, C:0.10, G:0.16, T:0.19
Consensus pattern (28 bp):
CAAAGAAAAAGAAATTGAAATACCTAGT
Found at i:87585 original size:27 final size:27
Alignment explanation
Indices: 87555--87615 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
87545 AGGTTCCAGA
*
87555 GAACTATTCACGATAGTGAAATAGTTG
1 GAACTATTCACGATAGTGAAATAGTGG
87582 GAACTATTCACGATAGTGAAATAGTGG
1 GAACTATTCACGATAGTGAAATAGTGG
*
87609 GAGCTAT
1 GAACTAT
87616 CCGTAAACGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.28
Consensus pattern (27 bp):
GAACTATTCACGATAGTGAAATAGTGG
Found at i:90218 original size:14 final size:14
Alignment explanation
Indices: 90199--90264 Score: 78
Period size: 14 Copynumber: 4.4 Consensus size: 14
90189 GATATTGATT
90199 TCAAGTGGAGACGA
1 TCAAGTGGAGACGA
90213 TCAAGTGGAGACGA
1 TCAAGTGGAGACGA
*
90227 TCAAGCAAAATGGTGACGA
1 TCAAG-----TGGAGACGA
90246 TCAAGTGGAGACGA
1 TCAAGTGGAGACGA
90260 TCAAG
1 TCAAG
90265 CAAAATGGTA
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
14 32 0.71
19 13 0.29
ACGTcount: A:0.38, C:0.15, G:0.32, T:0.15
Consensus pattern (14 bp):
TCAAGTGGAGACGA
Found at i:90246 original size:19 final size:19
Alignment explanation
Indices: 90222--90273 Score: 60
Period size: 14 Copynumber: 3.0 Consensus size: 19
90212 ATCAAGTGGA
90222 GACGATCAAGCAAAATGGT
1 GACGATCAAGCAAAATGGT
*
90241 GACGATCAAG-----TGGA
1 GACGATCAAGCAAAATGGT
90255 GACGATCAAGCAAAATGGT
1 GACGATCAAGCAAAATGGT
90274 ATTGATTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 10
0.68 0.05 0.26
Matches are distributed among these distances:
14 13 0.50
19 13 0.50
ACGTcount: A:0.40, C:0.15, G:0.29, T:0.15
Consensus pattern (19 bp):
GACGATCAAGCAAAATGGT
Found at i:90250 original size:33 final size:33
Alignment explanation
Indices: 90208--90273 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
90198 TTCAAGTGGA
90208 GACGATCAAGTGGAGACGATCAAGCAAAATGGT
1 GACGATCAAGTGGAGACGATCAAGCAAAATGGT
90241 GACGATCAAGTGGAGACGATCAAGCAAAATGGT
1 GACGATCAAGTGGAGACGATCAAGCAAAATGGT
90274 ATTGATTTCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.39, C:0.15, G:0.30, T:0.15
Consensus pattern (33 bp):
GACGATCAAGTGGAGACGATCAAGCAAAATGGT
Found at i:102737 original size:2 final size:2
Alignment explanation
Indices: 102732--102782 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
102722 AAAATGATAG
102732 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
102774 TA TA TA TA T
1 TA TA TA TA T
102783 TACTTTTTTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:103026 original size:3 final size:3
Alignment explanation
Indices: 103020--103060 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
103010 CATCATCATC
103020 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
103061 GTATAAAATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:103197 original size:30 final size:30
Alignment explanation
Indices: 103163--103226 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
103153 GTGATAAAAA
* *
103163 TAAATTATCA-ATATAAATATAAAAAATATT
1 TAAATTATCATATAAAAAAATAAAAAAT-TT
* *
103193 TAAATTATTATATAAAAAAATTAAAAATTT
1 TAAATTATCATATAAAAAAATAAAAAATTT
103223 TAAA
1 TAAA
103227 GAGACAATCG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 15 0.52
31 14 0.48
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (30 bp):
TAAATTATCATATAAAAAAATAAAAAATTT
Found at i:110541 original size:20 final size:20
Alignment explanation
Indices: 110479--110565 Score: 105
Period size: 20 Copynumber: 4.5 Consensus size: 20
110469 ACTCAGATTC
*
110479 CAAATTCGCAACACGAATATGT
1 CAAATTCGCAACAC--ATAAGT
110501 -AAA-TCGCAACAC-TAA--
1 CAAATTCGCAACACATAAGT
110516 -AAATTCGCAACACATAAGT
1 CAAATTCGCAACACATAAGT
110535 CAAATTCGCAACACATAAGT
1 CAAATTCGCAACACATAAGT
110555 CAAATTCGCAA
1 CAAATTCGCAA
110566 AGCGCATTTA
Statistics
Matches: 59, Mismatches: 1, Indels: 12
0.82 0.01 0.17
Matches are distributed among these distances:
15 3 0.05
16 9 0.15
17 5 0.08
20 39 0.66
21 3 0.05
ACGTcount: A:0.46, C:0.24, G:0.10, T:0.20
Consensus pattern (20 bp):
CAAATTCGCAACACATAAGT
Found at i:110544 original size:36 final size:35
Alignment explanation
Indices: 110480--110548 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 35
110470 CTCAGATTCC
*
110480 AAATTCGCAACACGAATATGTAAATCGCAACACTAA
1 AAATTCGCAACAC-AATAAGTAAATCGCAACACTAA
110516 AAATTCGCAACAC-ATAAGTCAAATTCGCAACAC
1 AAATTCGCAACACAATAAGT-AAA-TCGCAACAC
110549 ATAAGTCAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
34 5 0.17
35 3 0.10
36 22 0.73
ACGTcount: A:0.46, C:0.25, G:0.10, T:0.19
Consensus pattern (35 bp):
AAATTCGCAACACAATAAGTAAATCGCAACACTAA
Found at i:111133 original size:19 final size:19
Alignment explanation
Indices: 111111--111175 Score: 105
Period size: 19 Copynumber: 3.4 Consensus size: 19
111101 AAATCGCAAC
111111 GCGATTTT-AGTTTCGCGTT
1 GCGATTTTCA-TTTCGCGTT
*
111130 GCGATTTTCATTTCACGTT
1 GCGATTTTCATTTCGCGTT
111149 GCGATTTTCATTTCGCGTT
1 GCGATTTTCATTTCGCGTT
111168 GCGATTTT
1 GCGATTTT
111176 AAGTTTCAGA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
19 42 0.98
20 1 0.02
ACGTcount: A:0.12, C:0.18, G:0.22, T:0.48
Consensus pattern (19 bp):
GCGATTTTCATTTCGCGTT
Found at i:113312 original size:21 final size:21
Alignment explanation
Indices: 113262--113323 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
113252 GATTCACCTG
*
113262 TCATCATTCAAGAGGCCTC-T
1 TCATCATTCAAGAGGCCCCTT
* *
113282 CCTATTATTCAAGAGGCCCCTT
1 TC-ATCATTCAAGAGGCCCCTT
*
113304 TCATCATTCAAGAGGTCCCT
1 TCATCATTCAAGAGGCCCCT
113324 CCCACCGTTC
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
20 1 0.03
21 31 0.91
22 2 0.06
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.31
Consensus pattern (21 bp):
TCATCATTCAAGAGGCCCCTT
Found at i:114896 original size:21 final size:21
Alignment explanation
Indices: 114854--114896 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
114844 TTTCTAGGCT
* * *
114854 AGGGGAATCGGTACCCATTCA
1 AGGGGAACCGATACCCACTCA
*
114875 AGGGGAACCGATACCCCCTCA
1 AGGGGAACCGATACCCACTCA
114896 A
1 A
114897 ACAAACCAGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.30, G:0.26, T:0.14
Consensus pattern (21 bp):
AGGGGAACCGATACCCACTCA
Found at i:114970 original size:24 final size:22
Alignment explanation
Indices: 114925--114970 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 22
114915 AATGTCATGG
*
114925 GGGAACCGATACCCCCACAGGA
1 GGGAACCGATACCCCCAAAGGA
*
114947 GGGAACCGATTCACCCCTAAAGGA
1 GGGAACCGA-T-ACCCCCAAAGGA
114971 AGAAAAGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 9 0.45
23 1 0.05
24 10 0.50
ACGTcount: A:0.33, C:0.33, G:0.26, T:0.09
Consensus pattern (22 bp):
GGGAACCGATACCCCCAAAGGA
Found at i:115471 original size:2 final size:2
Alignment explanation
Indices: 115464--115517 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
115454 AATCATTTAC
115464 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
115506 AT AT AT AT AT AT
1 AT AT AT AT AT AT
115518 GAATATAAGG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:116584 original size:23 final size:23
Alignment explanation
Indices: 116549--116639 Score: 114
Period size: 23 Copynumber: 4.0 Consensus size: 23
116539 ATTATTATAT
116549 GGCACTACT-GTGCAATTCTACGC
1 GGCACT-CTGGTGCAATTCTACGC
116572 GGCACTCTGGTGCAATTCTACGC
1 GGCACTCTGGTGCAATTCTACGC
* * *
116595 GACACTCCGGTGCAATTCTACGT
1 GGCACTCTGGTGCAATTCTACGC
*
116618 GGCACT-TCGGTGCAATTATACG
1 GGCACTCT-GGTGCAATTCTACG
116640 AGTTGTGGTG
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
22 2 0.03
23 58 0.97
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (23 bp):
GGCACTCTGGTGCAATTCTACGC
Found at i:117996 original size:13 final size:13
Alignment explanation
Indices: 117978--118019 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
117968 ATTATTTTTT
117978 ATTTGTTTAATTG
1 ATTTGTTTAATTG
**
117991 ATTTGTAAAAGTTG
1 ATTTGTTTAA-TTG
118005 ATTTGTTTAATTG
1 ATTTGTTTAATTG
118018 AT
1 AT
118020 GTATAAATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
13 13 0.54
14 11 0.46
ACGTcount: A:0.29, C:0.00, G:0.17, T:0.55
Consensus pattern (13 bp):
ATTTGTTTAATTG
Found at i:118073 original size:64 final size:64
Alignment explanation
Indices: 117930--118075 Score: 213
Period size: 64 Copynumber: 2.3 Consensus size: 64
117920 TTGATGTATT
* * *
117930 TGTAAAAGTTGATTTATTTAATTGATGAGGAAATAATAATTATTTTTTATTTGTTTAATTGATT
1 TGTAAAAGTTGATTTGTTTAATTGATGAGGAAATAATAATTATTTTTTACTTGTTTAATTGATC
* ** *
117994 TGTAAAAGTTGATTTGTTTAATTGATGTA-TAAATAATTCTTATTTTTTGCTTGTTTAATTGATC
1 TGTAAAAGTTGATTTGTTTAATTGATG-AGGAAATAATAATTATTTTTTACTTGTTTAATTGATC
118058 TGTAAAAGTTGATTTGTT
1 TGTAAAAGTTGATTTGTT
118076 GTTTTAAATT
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
64 73 0.99
65 1 0.01
ACGTcount: A:0.31, C:0.02, G:0.15, T:0.52
Consensus pattern (64 bp):
TGTAAAAGTTGATTTGTTTAATTGATGAGGAAATAATAATTATTTTTTACTTGTTTAATTGATC
Found at i:118194 original size:29 final size:29
Alignment explanation
Indices: 118161--118217 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
118151 TTTCGCGTTT
118161 CAAATTTGACTTTCGCAA-AATTCGCAACG
1 CAAATTTGACTTTCGCAACAA-TCGCAACG
118190 CAAATTTGACTTTCGCAACAATCGCAAC
1 CAAATTTGACTTTCGCAACAATCGCAAC
118218 AAAAAATCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 25 0.93
30 2 0.07
ACGTcount: A:0.35, C:0.26, G:0.12, T:0.26
Consensus pattern (29 bp):
CAAATTTGACTTTCGCAACAATCGCAACG
Found at i:119603 original size:18 final size:18
Alignment explanation
Indices: 119580--119616 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
119570 TGAAATTTAT
119580 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
119598 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
119616 A
1 A
119617 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:119751 original size:15 final size:15
Alignment explanation
Indices: 119731--119760 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
119721 GCTAAAAGAC
119731 AATATTGATTGAGTT
1 AATATTGATTGAGTT
119746 AATATTGATTGAGTT
1 AATATTGATTGAGTT
119761 CAAAGCTGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (15 bp):
AATATTGATTGAGTT
Found at i:120061 original size:25 final size:25
Alignment explanation
Indices: 120014--120063 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
120004 CATTATTTTC
* * *
120014 CAAATAATGTTCTCATAACAATGTT
1 CAAATAATGTACCCACAACAATGTT
*
120039 CAAATAATGTACCCACAATAATGTT
1 CAAATAATGTACCCACAACAATGTT
120064 TAATTGATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (25 bp):
CAAATAATGTACCCACAACAATGTT
Found at i:120236 original size:29 final size:29
Alignment explanation
Indices: 120194--120254 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
120184 AATTCGCAAC
*
120194 GCGAAAGTAAAATTCGCGTTGCGATTGTT
1 GCGAAAGTAAAATTCGCATTGCGATTGTT
* * *
120223 GCGAAAGTCAAATTCGCATTGTGATTTTT
1 GCGAAAGTAAAATTCGCATTGCGATTGTT
120252 GCG
1 GCG
120255 TTGCGAATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (29 bp):
GCGAAAGTAAAATTCGCATTGCGATTGTT
Found at i:120513 original size:18 final size:18
Alignment explanation
Indices: 120490--120525 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
120480 AAGCCGGTTA
120490 TGATTGAGATTTTGATTT
1 TGATTGAGATTTTGATTT
*
120508 TGATTGCGATTTTGATTT
1 TGATTGAGATTTTGATTT
120526 CCTTTTGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.19, C:0.03, G:0.22, T:0.56
Consensus pattern (18 bp):
TGATTGAGATTTTGATTT
Found at i:122967 original size:12 final size:12
Alignment explanation
Indices: 122946--122979 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
122936 GGTTGTGGGT
*
122946 TTTGAGATTGTG
1 TTTGATATTGTG
122958 TTTGATATTGTG
1 TTTGATATTGTG
*
122970 TTTGGTATTG
1 TTTGATATTG
122980 GAAATATGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.29, T:0.56
Consensus pattern (12 bp):
TTTGATATTGTG
Found at i:123595 original size:16 final size:15
Alignment explanation
Indices: 123573--123611 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
123563 AAAATCATTG
123573 AAAAATTATATATAAA
1 AAAAATTATATA-AAA
* *
123589 TAAAATTATGTAAAA
1 AAAAATTATATAAAA
123604 AAAAATTA
1 AAAAATTA
123612 GAGATGGGGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 10 0.50
16 10 0.50
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (15 bp):
AAAAATTATATAAAA
Found at i:123607 original size:14 final size:15
Alignment explanation
Indices: 123573--123611 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
123563 AAAATCATTG
123573 AAAAATTATATATAA
1 AAAAATTATATATAA
* *
123588 ATAAAATTATGTAAAA
1 A-AAAATTATATATAA
123604 AAAAATTA
1 AAAAATTA
123612 GAGATGGGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (15 bp):
AAAAATTATATATAA
Found at i:123854 original size:21 final size:20
Alignment explanation
Indices: 123769--123865 Score: 88
Period size: 20 Copynumber: 4.8 Consensus size: 20
123759 ATAAAACCTA
* * *
123769 TTGCGAAATTAAAATTCATG
1 TTGCGAATTTGAAATTCAAG
* * *
123789 TTGCGAATTCGAAAATCGAG
1 TTGCGAATTTGAAATTCAAG
*
123809 TTGCGAATTCAGAAA-TCAAG
1 TTGCGAATT-TGAAATTCAAG
*
123829 TTGCGAATTTGAAATTCAGTG
1 TTGCGAATTTGAAATTCA-AG
123850 TTGCGAATTTGGAAAT
1 TTGCGAATTT-GAAAT
123866 CGCATTGTGA
Statistics
Matches: 63, Mismatches: 10, Indels: 6
0.80 0.13 0.08
Matches are distributed among these distances:
19 4 0.06
20 39 0.62
21 15 0.24
22 5 0.08
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.32
Consensus pattern (20 bp):
TTGCGAATTTGAAATTCAAG
Found at i:123898 original size:20 final size:20
Alignment explanation
Indices: 123788--123900 Score: 102
Period size: 20 Copynumber: 5.6 Consensus size: 20
123778 TAAAATTCAT
* * *
123788 GTTGCGAATTCGAAAATCGA
1 GTTGCGAATTTGGAAATCGC
** **
123808 GTTGCGAATTCAGAAATCAA
1 GTTGCGAATTTGGAAATCGC
*
123828 GTTGCGAATTT-GAAATTCAGT
1 GTTGCGAATTTGGAAA-TC-GC
123849 GTTGCGAATTTGGAAATCGC
1 GTTGCGAATTTGGAAATCGC
* *
123869 ATTGTGAATTTGGAAATCGC
1 GTTGCGAATTTGGAAATCGC
*
123889 GTTGCAAATTTG
1 GTTGCGAATTTG
123901 ACTTCTGTTT
Statistics
Matches: 78, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
19 4 0.05
20 57 0.73
21 13 0.17
22 4 0.05
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.32
Consensus pattern (20 bp):
GTTGCGAATTTGGAAATCGC
Found at i:123899 original size:61 final size:60
Alignment explanation
Indices: 123780--123901 Score: 147
Period size: 61 Copynumber: 2.0 Consensus size: 60
123770 TGCGAAATTA
*
123780 AAATTCATGTTGCGAATTCGAAAATCGAGTTGCGAATTCAGAAATCAAGTTGCGAATTTG
1 AAATTCATGTTGCGAATTCGAAAATCGAGTTGCGAATTCAGAAATCAAGTTGCAAATTTG
* * * ** **
123840 AAATTCAGTGTTGCGAATTTGGAAATCGCA-TTGTGAATTTGGAAATCGCGTTGCAAATTTG
1 AAATTCA-TGTTGCGAATTCGAAAATCG-AGTTGCGAATTCAGAAATCAAGTTGCAAATTTG
123901 A
1 A
123902 CTTCTGTTTT
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
60 7 0.13
61 44 0.85
62 1 0.02
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.32
Consensus pattern (60 bp):
AAATTCATGTTGCGAATTCGAAAATCGAGTTGCGAATTCAGAAATCAAGTTGCAAATTTG
Found at i:124870 original size:181 final size:182
Alignment explanation
Indices: 124494--124966 Score: 741
Period size: 181 Copynumber: 2.6 Consensus size: 182
124484 GATCCAAATT
* * * **
124494 AAAAATGTGTCGATCCAAAACGATATAACAGGTAAAACTATGACAAAACCGGTATTGAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
* * ** * *
124559 AAACCGGTAAAGCGCTACCGGATACGTTTAAAGTGTCGGTACTTTAATATAAGGATCGACACTTC
66 AAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTTC
*
124624 GTGAATTTAAAAGAGAAGCAGTTTTAAATCCTATAAAGTGTCGATACTTTAA
131 GTGAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTAA
* *
124676 AAAAATGTATCGATCCAAAACGATATACCATGTAAAAATATGATAAAACCGGTATCAAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
* *
124741 AAACCGGTAAAACGTTACCGGATATATTGAAAGTGTCGATACTTT-ATATAAGGATCGACACTTT
66 AAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTTC
** *
124805 GTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAATGTGTCGATACTTTAA
131 GTGAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTAA
* * *
124857 AAAAATATATCGATCCACAACGATATAACAGGTAAAAATATGATAAAATCGGTATCAAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
124922 AAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTT
66 AAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTT
124967 CGTAAGTACG
Statistics
Matches: 267, Mismatches: 24, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
181 170 0.64
182 97 0.36
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.27
Consensus pattern (182 bp):
AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
AAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTTC
GTGAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTAA
Found at i:124910 original size:20 final size:19
Alignment explanation
Indices: 124887--124933 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
124877 CGATATAACA
*
124887 GGTAAAAATATGATAAAATC
1 GGTAAAAA-ATGATAAAACC
*
124907 GGTATCAAAATGATAAAACC
1 GGTA-AAAAATGATAAAACC
124927 GGTAAAA
1 GGTAAAA
124934 CGATACCGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.53, C:0.09, G:0.17, T:0.21
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:127179 original size:21 final size:21
Alignment explanation
Indices: 127155--127198 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
127145 AAGACAATCA
127155 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
127176 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
127197 AG
1 AG
127199 GCATAAAGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.41, C:0.11, G:0.32, T:0.16
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:127274 original size:33 final size:33
Alignment explanation
Indices: 127232--127297 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
127222 AAATAGATGG
*
127232 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
127265 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
127298 TATTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:129111 original size:19 final size:19
Alignment explanation
Indices: 129087--129135 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
129077 AATGTAGGGT
129087 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
129106 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
129125 TAATTTTGTAT
1 TAATTTTGTAT
129136 GTGAATATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.55
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:130505 original size:598 final size:600
Alignment explanation
Indices: 129369--130928 Score: 2858
Period size: 598 Copynumber: 2.6 Consensus size: 600
129359 AATTTACAAT
129369 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
*
129434 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAATATACCGATTTT
66 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGATTTT
129499 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
* * *
129564 AATGAATGGCAAACAGGGTGCAACAATAAAATGTCGATCCATATATAAAAAGT-TCGATACGATA
196 AATGAATGGCAAACAAGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCGATA
*
129628 AACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAGGTATACCG
261 AACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCG
129693 GTTTTATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGGGTCGATATTTTTGG
326 GTTTTATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGGGTCGATATTTTTGG
* *
129758 TCCAGAATGAATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATC
391 TCCAGAATGAATGGAAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTATCGATC
129823 CCATAAACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTA
456 CCATAAACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTA
* * * * * *
129888 TACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATT
521 TACCGATTTTATGAGAGAATAGGTCTAAATAATATATCGACACTTTTATAGTTTGTGTCAATATT
*
129953 TTTGGTCCATAATGA
586 TTTGGTCCAGAATGA
129968 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
130033 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGATTTT
66 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGATTTT
130098 ATGAGAGAATAGGTCT-AATAATGTATCGACACTTTTGTAGTTTGTGTCGATA-TTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
130161 AATGAATGGCAAACAAGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCGATA
196 AATGAATGGCAAACAAGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCGATA
*
130226 AACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCG
261 AACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCG
* *
130291 GTTTTATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTTG
326 GTTTTATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGGGTCGATATTTTTGG
130356 TCCAGAATGAATGGAAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTATCGATC
391 TCCAGAATGAATGGAAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTATCGATC
* *
130421 CGATAAACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTA
456 CCATAAACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTA
130486 TACCGATTTTATGAGAGAATAGGTCTAAATAATATATCGACACTTTTATAGTTTGTGTCAATATT
521 TACCGATTTTATGAGAGAATAGGTCTAAATAATATATCGACACTTTTATAGTTTGTGTCAATATT
130551 TTTGGTCCAGAATGA
586 TTTGGTCCAGAATGA
*
130566 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAATTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
*
130631 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
66 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGATTTT
130696 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
*
130761 AATGAATGGCAAACAAGGTGCAATAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCGATA
196 AATGAATGGCAAACAAGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCGATA
*
130826 AACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCA
261 AACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCG
* *
130891 GTTTTATGAGAGAATTGGTATATAAT-ATGTATCGACAC
326 GTTTTATGAGAGAATAGGTCTA-AATAATGTATCGACAC
130929 CGTTTAATGT
Statistics
Matches: 931, Mismatches: 26, Indels: 7
0.97 0.03 0.01
Matches are distributed among these distances:
597 62 0.07
598 515 0.55
599 181 0.19
600 170 0.18
601 3 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (600 bp):
ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGATTTT
ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
AATGAATGGCAAACAAGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCGATA
AACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCG
GTTTTATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGGGTCGATATTTTTGG
TCCAGAATGAATGGAAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTATCGATC
CCATAAACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTA
TACCGATTTTATGAGAGAATAGGTCTAAATAATATATCGACACTTTTATAGTTTGTGTCAATATT
TTTGGTCCAGAATGA
Found at i:130904 original size:798 final size:798
Alignment explanation
Indices: 129369--130928 Score: 2784
Period size: 798 Copynumber: 2.0 Consensus size: 798
129359 AATTTACAAT
* *
129369 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAAGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
129434 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAATATACCGATTTT
66 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAATATACCGATTTT
129499 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
*
129564 AATGAATGGCAAACAGGGTGCAACAATAAAATGTCGATCCATATATAAAAAGTTCGATACGATAA
196 AATGAATGGAAAACAGGGTGCAACAATAAAATGTCGATCCATATATAAAAAGTTCGATACGATAA
* *
129629 ACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAGGTATACCGG
261 ACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGA
* * *
129694 TTTTATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGGGTCGATATTTTTGGT
326 TTTTATGAGAGAATAGGTCTAAATAATATATCGACACTTTTATAGTTTGGGTCAATATTTTTGGT
129759 CCAGAATGAATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCC
391 CCAGAATGAATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCC
*
129824 CATAAACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTAT
456 CATAAACATCGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTAT
* *
129889 ACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTT
521 ACCGGTTTTATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTT
* * *
129954 TTGGTCCATAATGAATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTC
586 TTGGTCCAGAATGAATGGCAAACAAGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTC
*
130019 GATCCCATAAACATCGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACA
651 GATCCCATAAACATCGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACA
*
130084 AGTATACCGATTTTATGAGAGAATAGG--TCTAATAATGTATCGACACTTTTGTAGTTTGTGTCG
716 AGTATACCGATTTTATGAGAGAATAGGTATATAAT-ATGTATCGACACTTTTGTAGTTTGTGTCG
130147 ATATTTTGGTCCAGAATGA
780 ATATTTTGGTCCAGAATGA
*
130166 ATGGCAAACAAGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCGATAAACAT
1 ATGGCAAACAAGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* * *
130231 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
66 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAATATACCGATTTT
*
130296 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTTGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
* *
130361 AATGAATGGAAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTATCGATCCGATA
196 AATGAATGGAAAACAGGGTGCAACAATAAAATGTCGATCCATATATAAAAAGT-TCGATACGATA
*
130426 AACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCG
260 AACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCG
*
130491 ATTTTATGAGAGAATAGGTCTAAATAATATATCGACACTTTTATAGTTTGTGTCAATATTTTTGG
325 ATTTTATGAGAGAATAGGTCTAAATAATATATCGACACTTTTATAGTTTGGGTCAATATTTTTGG
* *
130556 TCCAGAATGAATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAATTGTCGATC
390 TCCAGAATGAATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATC
*
130621 CCATAAACATCGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTA
455 CCATAAACATCGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTA
130686 TACCGGTTTTATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATT
520 TACCGGTTTTATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATT
*
130751 TTTGGTCCAGAATGAATGGCAAACAAGGTGCAATAATAAAGTGTCGATCCATATATAAAAAGTGT
585 TTTGGTCCAGAATGAATGGCAAACAAGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGT
* *
130816 CGATCCGATAAACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTAC
650 CGATCCCATAAACATCGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTAC
*
130881 AAGTATACC-AGTTTTATGAGAGAATTGGTATATAATATGTATCGACAC
715 AAGTATACCGA-TTTTATGAGAGAATAGGTATATAATATGTATCGACAC
130929 CGTTTAATGT
Statistics
Matches: 727, Mismatches: 32, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
797 240 0.33
798 470 0.65
799 12 0.02
800 5 0.01
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (798 bp):
ATGGCAAACAAGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAATATACCGATTTT
ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
AATGAATGGAAAACAGGGTGCAACAATAAAATGTCGATCCATATATAAAAAGTTCGATACGATAA
ACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGA
TTTTATGAGAGAATAGGTCTAAATAATATATCGACACTTTTATAGTTTGGGTCAATATTTTTGGT
CCAGAATGAATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCC
CATAAACATCGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTAT
ACCGGTTTTATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTT
TTGGTCCAGAATGAATGGCAAACAAGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTC
GATCCCATAAACATCGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACA
AGTATACCGATTTTATGAGAGAATAGGTATATAATATGTATCGACACTTTTGTAGTTTGTGTCGA
TATTTTGGTCCAGAATGA
Found at i:130948 original size:200 final size:200
Alignment explanation
Indices: 129369--130928 Score: 2750
Period size: 200 Copynumber: 7.8 Consensus size: 200
129359 AATTTACAAT
*
129369 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* * *
129434 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAATATACCGATTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
129499 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
129564 AATGA
196 AATGA
* * *
129569 ATGGCAAACAGGGTGCAACAATAAAATGTCGATCCATATATAAAAAGT-TCGATACGATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* *
129633 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAGGTATACCGGTTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
*
129698 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGGGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
129763 AATGA
196 AATGA
129768 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
*
129833 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
* * *
129898 ATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAT
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
129963 AATGA
196 AATGA
*
129968 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* *
130033 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGATTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
130098 ATGAGAGAATAGGTCT-AATAATGTATCGACACTTTTGTAGTTTGTGTCGATA-TTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
130161 AATGA
196 AATGA
* *
130166 ATGGCAAACAAGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCGATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
130231 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
*
130296 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTTGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
130361 AATGA
196 AATGA
* * *
130366 ATGGAAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTATCGATCCGATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
*
130431 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGATTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
* * *
130496 ATGAGAGAATAGGTCTAAATAATATATCGACACTTTTATAGTTTGTGTCAATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
130561 AATGA
196 AATGA
* *
130566 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAATTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
*
130631 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
130696 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
130761 AATGA
196 AATGA
* * *
130766 ATGGCAAACAAGGTGCAATAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCGATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* *
130831 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCAGTTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
* *
130896 ATGAGAGAATTGGTATATAAT-ATGTATCGACAC
131 ATGAGAGAATAGGTCTA-AATAATGTATCGACAC
130929 CGTTTAATGT
Statistics
Matches: 1297, Mismatches: 59, Indels: 8
0.95 0.04 0.01
Matches are distributed among these distances:
198 156 0.12
199 261 0.20
200 877 0.68
201 3 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (200 bp):
ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
AATGA
Found at i:131340 original size:181 final size:180
Alignment explanation
Indices: 131037--131405 Score: 666
Period size: 181 Copynumber: 2.0 Consensus size: 180
131027 GTAGGTATAA
* *
131037 ATGTGTCGGTACTTTATGTCCATATGGAAGAAAATGTGTCAATACCTTGTCAAAAAGTGTCGACA
1 ATGTGTCGGTACTTTATGTCCAAATGGAAGAAAATGTGTCAATACATTGTCAAAAAGTGTCGACA
* *
131102 TTTACATATCGGAACCTAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATAT
66 TTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATAT
*
131167 ACCGGTTTTATGAGCGAATAGGTCTATAACCTATATCGACACTTTTTAAT
131 ACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTTTAAT
*
131217 ATGTGTCGGTACTTTATGTCCAGAATGGAAGAAAATGTGTCGATACATTGTCAAAAAGTGTCGAC
1 ATGTGTCGGTACTTTATGTCCA-AATGGAAGAAAATGTGTCAATACATTGTCAAAAAGTGTCGAC
*
131282 ATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTTATATAACCGGTATAAATA
65 ATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATA
131347 TACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTTTAAT
130 TACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTTTAAT
131398 ATGTGTCG
1 ATGTGTCG
131406 CTAATTTTAA
Statistics
Matches: 181, Mismatches: 7, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
180 22 0.12
181 159 0.88
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (180 bp):
ATGTGTCGGTACTTTATGTCCAAATGGAAGAAAATGTGTCAATACATTGTCAAAAAGTGTCGACA
TTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATAT
ACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTTTAAT
Done.