genome.fa.s4912.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004912.1 Hibiscus syriacus cultivar Beakdansim tig00011061_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80529

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9654--9730	29	2.7	29	85	0	109	42	24	6	25	1.78
16799--16953	29	5.6	29	74	10	110	49	14	1	34	1.54
16789--16917	27	4.8	27	75	12	104	48	11	0	38	1.45
16874--16953	28	2.8	29	84	1	99	47	17	3	31	1.65
22345--22426	15	5.5	15	85	2	112	39	7	18	35	1.78
22345--22426	30	2.8	30	92	1	130	39	7	18	35	1.78
22340--22426	45	2.0	44	90	2	138	41	6	18	33	1.77
22409--22478	20	3.5	20	96	0	131	40	10	14	35	1.79
22635--22699	28	2.3	27	82	15	78	50	1	1	46	1.20
22635--22732	31	3.2	32	76	15	84	51	2	1	45	1.19
22688--22796	28	4.0	27	75	15	82	49	0	0	48	1.13
22750--22790	21	2.0	21	85	9	57	53	0	0	46	1.00
22772--22809	10	4.0	10	89	3	53	50	0	0	50	1.00
22994--23095	42	2.4	42	95	0	186	43	18	19	18	1.89
33805--33861	31	2.0	30	83	13	75	22	5	19	52	1.66
34295--34356	22	2.9	20	79	18	63	32	0	1	66	1.02
41245--41329	19	4.5	19	100	0	170	31	16	30	21	1.95
42819--42887	23	3.0	23	89	0	111	17	24	26	31	1.97
46355--46419	24	3.0	22	80	8	71	29	18	27	24	1.98
47869--47929	23	2.7	23	86	0	86	18	26	26	29	1.98
52013--52046	18	1.9	17	88	5	50	29	23	23	23	1.99
64052--64093	2	21.0	2	100	0	84	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72634--72679	23	2.1	22	88	8	67	39	8	13	39	1.75
75771--75815	23	2.0	23	90	0	72	46	8	11	33	1.70
79197--79569	183	2.0	183	96	0	683	33	17	14	34	1.90
79678--80529	198	4.4	200	90	5	1347	31	17	14	36	1.90
79678--80529	397	2.2	384	90	5	1349	31	17	14	36	1.90

Tables:   1

The End!