genome.fa.s4914.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004914.1 Hibiscus syriacus cultivar Beakdansim tig00011064_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64532

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5146--5173	2	14.0	2	100	0	56	50	0	0	50	1.00
6884--6924	21	2.0	21	85	0	55	78	0	7	14	0.96
7238--7283	23	2.0	23	95	0	83	43	21	2	32	1.65
15705--15743	16	2.4	16	91	0	60	17	12	43	25	1.85
23739--23769	13	2.3	14	94	5	55	32	0	0	67	0.91
23766--23811	24	2.0	23	83	12	58	45	10	0	43	1.39
24294--24344	27	2.0	26	85	14	70	58	9	3	27	1.47
24732--24788	14	4.1	14	84	8	80	15	10	17	56	1.67
32290--32388	21	4.8	20	75	6	81	37	23	18	21	1.94
32355--32584	20	11.5	20	81	5	232	36	24	18	19	1.94
33267--33313	24	2.0	24	87	8	69	25	14	21	38	1.92
33488--33512	12	2.1	12	100	0	50	72	0	28	0	0.86
35835--36019	19	10.5	19	79	17	229	46	17	22	13	1.83
35790--36000	33	6.2	33	81	16	215	45	18	22	13	1.83
35889--36041	33	4.5	33	74	16	159	45	17	22	13	1.84
35835--36041	52	4.0	52	99	0	405	45	17	23	13	1.83
36048--36182	72	1.9	71	98	1	261	14	23	17	44	1.85
36048--36164	33	3.4	33	85	12	171	13	23	17	44	1.85
36066--36182	19	6.4	19	87	10	181	14	22	17	46	1.84
36268--36304	14	2.6	14	95	0	65	43	21	0	35	1.53
38223--38288	19	3.4	20	87	6	91	45	27	16	10	1.80
38320--38448	19	7.3	19	75	17	125	8	17	28	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38320--38411	33	2.8	33	93	3	150	7	18	28	45	1.76
38496--38871	93	4.1	93	99	0	736	46	19	12	22	1.83
40577--40666	14	5.7	14	72	23	72	43	23	24	8	1.82
40569--40683	33	3.5	33	97	0	221	46	20	23	9	1.80
40591--40688	19	5.7	19	71	22	90	43	22	23	10	1.83
40707--40802	21	4.8	20	82	6	122	12	23	17	45	1.83
40708--40803	41	2.4	40	89	1	138	11	25	17	45	1.82
40882--40952	33	2.2	33	92	0	115	47	18	22	11	1.80
41134--41188	22	2.5	22	81	0	74	20	16	40	23	1.91
41334--41527	20	9.6	20	82	5	221	19	19	25	35	1.95
41334--41527	60	3.2	60	83	0	253	19	19	25	35	1.95
41514--41596	21	4.0	21	73	6	78	25	16	24	33	1.96
41494--41592	42	2.4	43	77	11	100	21	18	23	37	1.94
49771--49795	13	1.9	13	100	0	50	88	0	12	0	0.53
59294--59503	105	2.0	105	85	0	285	24	14	21	39	1.91
59532--59578	24	2.0	24	83	4	60	25	23	23	27	2.00
62243--62288	25	1.9	24	82	8	58	76	4	13	6	1.14
62472--62518	15	3.1	15	80	14	51	57	8	4	29	1.48
62478--62520	15	2.8	16	83	13	54	60	9	2	27	1.40

Tables:   1

The End!