genome.fa.s4915.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004915.1 Hibiscus syriacus cultivar Beakdansim tig00011065_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  184635

Tables:   1   

This is table  1  of  1  ( 101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1260--1475	45	4.9	45	86	5	296	28	22	9	39	1.85
1249--1512	45	6.0	45	84	6	281	29	23	9	37	1.86
1476--1674	78	2.5	79	88	4	305	31	24	10	34	1.88
1560--1674	45	3.1	34	69	24	88	30	25	8	35	1.86
4824--4868	23	2.0	23	90	0	72	24	24	24	26	2.00
4826--4875	23	2.3	23	82	6	59	30	20	20	30	1.97
4836--5137	143	2.1	141	90	6	475	32	22	18	27	1.97
5238--5265	14	2.0	14	100	0	56	35	28	7	28	1.84
9808--9852	23	2.0	23	90	0	72	24	26	26	22	2.00
9820--10128	143	2.1	146	91	5	493	33	22	18	26	1.96
11029--11063	18	1.9	18	88	11	54	22	17	5	54	1.64
15133--15190	20	2.7	20	86	10	71	27	22	18	31	1.97
15178--15314	64	2.2	63	82	6	161	25	23	17	33	1.96
17322--17359	16	2.4	16	100	0	76	60	0	5	34	1.19
18644--18712	2	34.5	2	100	0	138	49	0	0	50	1.00
21522--21551	3	10.0	3	100	0	60	0	33	0	66	0.92
27374--27400	11	2.5	11	100	0	54	74	0	0	25	0.83
27474--27512	14	2.8	14	80	0	51	64	0	2	33	1.08
28301--28333	16	2.1	15	94	5	57	0	15	27	57	1.38
28827--28919	3	31.3	3	75	6	64	53	1	2	43	1.19
28867--28919	25	2.2	23	86	6	70	54	1	3	39	1.29
29113--29367	37	6.9	37	67	7	135	39	11	17	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29067--29367	73	4.1	73	91	1	460	37	11	17	32	1.87
29159--29363	36	5.6	36	71	2	176	40	11	16	31	1.85
30069--30124	20	2.7	20	91	5	85	37	12	16	33	1.86
35056--35151	20	4.7	20	65	14	61	55	13	14	16	1.70
38398--38457	29	2.0	30	84	9	79	60	3	5	31	1.35
38417--38461	21	2.2	20	84	4	54	64	0	2	33	1.06
38421--38461	14	2.8	15	82	13	50	63	0	2	34	1.08
39807--39899	3	31.3	3	71	10	66	54	2	2	40	1.24
39800--39837	12	3.2	12	81	11	51	52	0	0	47	1.00
39847--39899	25	2.2	23	86	6	70	54	1	3	39	1.29
44468--44502	2	17.5	2	100	0	70	51	0	0	48	1.00
46093--46245	60	2.6	59	80	6	175	39	16	11	31	1.85
50394--50419	12	2.2	12	100	0	52	26	23	15	34	1.94
51983--52014	15	2.1	15	94	0	55	56	9	9	25	1.61
94056--94374	94	3.4	94	90	1	489	41	15	7	36	1.75
94056--94438	94	4.0	94	87	3	482	41	15	6	36	1.74
94056--94438	187	2.0	193	85	5	528	41	15	6	36	1.74
94248--94700	166	2.8	164	85	7	590	41	15	6	36	1.73
94632--94685	26	2.0	27	92	3	92	38	18	9	33	1.83
94610--94793	94	1.9	95	94	1	325	39	16	7	37	1.76
94728--94779	26	2.0	27	96	3	97	42	17	7	32	1.77
94729--94785	26	2.2	26	90	3	87	45	14	7	33	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102192--102270	26	3.0	26	92	1	122	48	20	13	17	1.81
104951--105046	47	2.0	49	93	4	169	21	5	20	52	1.66
110855--110885	16	1.9	16	100	0	62	48	12	6	32	1.67
111539--111575	18	2.1	18	94	0	65	35	0	18	45	1.50
111623--111697	2	37.5	2	100	0	150	49	0	0	50	1.00
113754--113854	51	2.0	51	98	0	193	34	12	21	30	1.91
115615--115645	16	1.9	16	93	0	53	51	9	19	19	1.74
118419--118463	22	2.0	23	86	4	65	44	0	2	53	1.13
118419--118464	23	2.0	23	83	8	58	45	0	2	52	1.13
120905--120955	22	2.3	22	100	0	102	35	13	11	39	1.82
122719--122838	60	2.0	60	86	0	168	50	4	10	35	1.57
126337--126396	23	2.7	21	83	16	77	18	21	13	46	1.83
128947--129059	57	2.0	58	91	1	183	45	6	15	32	1.72
128954--129043	29	3.1	28	68	15	67	45	5	15	33	1.69
128978--129059	29	2.8	29	70	17	80	50	6	12	31	1.64
129282--129320	6	6.2	6	85	8	51	46	2	0	51	1.14
129282--129320	13	3.1	12	85	10	51	46	2	0	51	1.14
129282--129320	19	2.0	20	85	9	55	46	2	0	51	1.14
130014--130057	13	3.5	13	87	6	63	20	52	13	13	1.74
131380--131438	30	2.0	30	96	0	109	28	30	13	27	1.94
143363--143398	6	6.0	6	86	0	54	44	2	52	0	1.15
148699--148738	21	1.9	21	94	0	71	32	30	12	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148723--148839	60	2.0	60	92	0	198	42	18	17	20	1.89
148731--148842	20	5.6	20	75	8	111	41	17	18	21	1.90
148962--149011	22	2.3	22	89	0	73	22	38	22	18	1.94
149339--149391	20	2.5	21	90	9	81	50	15	20	13	1.76
149391--149446	20	2.9	19	92	5	87	10	16	21	51	1.74
151164--151285	63	1.9	62	81	6	147	22	12	33	31	1.91
151580--151701	42	2.9	42	81	1	129	22	38	14	23	1.92
151584--151698	21	5.5	21	71	4	79	23	37	15	23	1.93
153051--153172	27	4.6	27	66	17	94	27	1	16	54	1.52
153123--153172	14	3.6	14	86	2	66	30	0	18	52	1.46
153227--153338	20	5.6	20	81	4	118	46	26	13	13	1.80
153583--153715	20	6.7	20	78	5	153	9	17	24	48	1.77
153583--153715	40	3.3	40	86	3	171	9	17	24	48	1.77
153583--153715	60	2.2	59	86	1	185	9	17	24	48	1.77
154022--154057	18	2.0	18	88	0	54	16	2	22	58	1.51
156180--156231	24	2.2	24	82	0	59	36	21	19	23	1.95
157124--157232	20	5.6	20	71	14	75	35	11	22	31	1.89
157256--157457	20	10.0	20	73	11	80	24	17	20	37	1.94
157258--157455	40	4.9	41	72	12	142	23	17	20	37	1.94
157305--157436	20	6.6	20	75	12	103	24	20	18	36	1.95
158013--158053	21	1.9	22	90	5	66	29	19	12	39	1.88
161167--161297	39	3.4	39	94	2	219	23	20	13	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
161698--161803	44	2.8	35	72	22	95	24	28	14	33	1.94
169687--169734	20	2.4	20	92	0	87	20	22	29	27	1.99
169724--169772	23	2.1	24	84	3	64	30	14	24	30	1.94
170805--170885	36	2.3	36	95	2	146	24	22	19	33	1.97
172060--172120	31	1.9	32	86	3	88	47	8	11	32	1.69
174443--174474	16	2.0	16	93	0	55	28	12	15	43	1.83
176188--176316	68	1.9	67	85	9	181	32	17	14	35	1.90
181975--182071	16	6.1	16	97	0	185	7	12	23	56	1.60
182001--182061	6	11.2	6	70	19	53	4	13	26	55	1.57
182141--182173	16	2.1	16	94	0	57	9	12	21	57	1.62
183209--183242	2	17.0	2	100	0	68	50	0	0	50	1.00
184423--184495	18	3.9	18	85	7	110	27	31	21	19	1.97
184422--184498	38	2.0	38	94	0	136	27	29	22	20	1.98

Tables:   1

The End!