genome.fa.s4916.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004916.1 Hibiscus syriacus cultivar Beakdansim tig00011067_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77544

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65--120	21	2.7	21	94	2	96	25	30	23	21	1.99
422--456	16	2.3	15	90	5	52	51	25	2	20	1.61
2411--2461	2	26.0	2	92	4	86	49	1	0	49	1.12
4109--4156	21	2.4	19	86	6	60	41	14	20	22	1.89
4238--4279	21	2.0	22	90	4	68	23	35	23	16	1.95
7343--7374	16	1.9	17	93	6	57	18	21	0	59	1.38
11127--11182	21	2.7	21	91	0	94	23	25	23	28	1.99
11508--11544	16	2.2	16	90	4	56	48	24	2	24	1.64
14455--14491	19	1.9	19	89	10	58	21	32	32	13	1.92
17014--17057	21	2.1	21	95	0	79	56	15	0	27	1.40
17128--17232	37	2.8	37	84	2	131	40	16	14	28	1.87
17704--17752	23	2.1	24	88	3	73	32	0	0	67	0.91
17951--18018	11	6.0	11	71	19	59	26	2	0	70	1.01
17927--18017	45	2.0	45	83	8	114	27	4	0	68	1.09
17948--18017	23	3.2	20	72	20	59	24	2	0	72	0.98
18101--18155	19	2.9	19	74	15	60	21	9	1	67	1.28
18906--18951	20	2.3	20	96	0	83	26	32	39	2	1.68
22384--22462	16	4.9	16	75	17	74	78	5	15	1	0.99
22390--22437	14	3.5	13	75	10	51	83	2	14	0	0.74
22384--22462	33	2.4	33	79	10	83	78	5	15	1	0.99
23055--23109	22	2.5	22	96	0	101	36	25	12	25	1.91
23699--24798	106	10.4	106	91	0	1682	34	25	18	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25548--25652	37	2.8	37	86	0	147	40	15	14	30	1.87
26119--26169	25	2.1	24	88	3	75	33	0	0	66	0.92
26168--26214	14	3.2	14	78	18	51	17	8	4	70	1.29
26338--26419	25	3.4	23	76	17	60	30	3	0	65	1.09
26349--26397	25	1.9	26	83	4	64	32	4	0	63	1.13
26363--26432	30	2.4	30	79	13	83	28	2	0	68	1.04
26338--26417	23	3.3	25	78	16	71	31	3	0	65	1.11
26310--26427	48	2.4	48	78	10	123	31	4	0	63	1.19
26517--26571	19	2.9	19	74	15	60	21	9	1	67	1.28
26718--26933	41	5.3	41	94	2	380	17	19	24	37	1.93
26909--26982	27	2.8	27	93	2	123	14	22	20	41	1.89
27069--27137	6	11.5	6	100	0	138	33	50	15	0	1.45
27645--27707	6	10.7	6	98	1	119	0	17	50	31	1.46
27791--27850	20	2.9	20	76	13	68	41	21	23	13	1.88
27839--27969	65	2.0	65	100	0	262	31	29	18	21	1.97
27816--27965	21	7.1	21	78	4	140	33	28	18	20	1.95
28093--28182	19	4.7	18	70	15	56	15	10	5	68	1.35
28509--28562	20	2.8	20	97	2	101	0	35	0	64	0.94
35032--35056	2	12.5	2	100	0	50	52	0	0	48	1.00
35780--35870	23	4.0	23	94	1	157	62	23	0	14	1.31
38993--39074	3	27.3	3	75	4	76	39	1	1	58	1.14
42702--42786	43	2.0	43	88	0	125	32	9	22	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46167--46228	32	1.9	32	90	0	97	43	19	16	20	1.88
51033--51438	45	9.0	45	92	1	616	23	22	20	33	1.97
51028--51438	136	3.0	134	91	2	644	23	22	20	33	1.97
51614--51689	3	25.3	3	73	5	64	39	1	1	57	1.15
51654--51690	16	2.4	16	90	4	58	40	0	0	59	0.97
59703--59911	36	6.0	36	81	6	214	22	23	21	32	1.98
59703--59875	72	2.4	72	89	0	249	22	24	21	31	1.98
59842--59901	31	1.9	31	89	0	93	26	21	20	31	1.98
68003--68071	35	2.0	35	85	5	95	42	18	0	39	1.51
68194--68232	19	2.1	19	100	0	78	25	30	23	20	1.98
69781--69881	39	2.7	36	79	8	96	40	1	7	49	1.43
74873--74925	12	4.4	12	74	9	54	32	41	9	16	1.81
76119--76182	32	2.0	32	87	6	94	39	18	14	28	1.90
76545--76581	3	12.3	3	100	0	74	67	0	0	32	0.91

Tables:   1

The End!