genome.fa.s4919.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004919.1 Hibiscus syriacus cultivar Beakdansim tig00011074_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69199

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1868--1934	30	2.2	30	100	0	134	28	23	0	47	1.52
3424--3487	23	2.8	23	82	0	92	32	26	25	15	1.95
25341--25409	23	3.0	23	86	0	102	17	27	23	31	1.97
25556--25620	32	2.0	32	87	0	94	24	4	23	47	1.70
27356--27440	30	2.8	30	96	0	161	42	22	16	18	1.89
27684--27708	4	6.2	4	100	0	50	24	0	0	76	0.80
36270--36326	15	3.9	15	76	4	71	45	5	17	31	1.71
36673--36723	23	2.2	23	82	0	57	45	1	1	50	1.24
36736--36800	27	2.4	28	80	14	82	52	3	0	44	1.16
36811--36863	23	2.3	23	83	6	63	47	1	1	49	1.23
36824--36897	31	2.4	29	80	10	76	48	1	2	47	1.24
37116--37210	42	2.3	42	86	0	127	46	16	17	18	1.85
38498--38562	21	3.1	21	64	4	60	35	20	16	27	1.94
38569--38617	20	2.5	20	100	0	98	44	24	14	16	1.84
38624--38719	19	4.9	19	79	3	102	35	18	9	36	1.83
38629--38715	39	2.2	39	100	0	174	34	19	10	35	1.86
39138--39175	20	1.9	20	88	0	58	13	15	21	50	1.78
40845--40894	21	2.4	21	82	0	64	22	14	30	34	1.93
40967--41006	21	1.9	21	94	0	71	22	12	27	37	1.90
41298--41405	42	2.6	42	82	2	119	22	37	16	24	1.94
41302--41420	21	5.7	20	75	14	82	23	36	16	23	1.95
41329--41420	42	2.2	42	84	3	114	23	36	16	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42731--42895	63	2.6	63	91	0	258	27	1	15	55	1.50
42989--43068	20	4.0	20	90	0	106	36	18	17	27	1.94
42994--43095	40	2.5	40	83	0	123	36	18	18	26	1.94
43105--43160	29	1.9	29	96	0	103	32	23	16	28	1.96
45696--45749	24	2.2	24	93	0	90	40	20	18	20	1.91
45696--45763	24	2.8	24	84	0	64	38	20	17	23	1.93
46490--46528	15	2.5	15	83	4	51	66	0	5	28	1.12
46686--46782	40	2.4	40	80	0	113	37	13	18	30	1.89
46710--46815	20	5.2	20	75	10	81	34	14	22	28	1.93
46741--46898	20	7.8	20	74	10	124	27	14	26	31	1.95
46757--46898	41	3.5	40	78	8	119	27	13	27	31	1.94
47319--47348	15	2.0	15	100	0	60	80	0	20	0	0.72
49606--49637	3	10.7	3	100	0	64	34	31	0	34	1.58
49638--49744	3	35.7	3	94	0	160	29	0	4	64	1.20
51844--52201	131	2.8	131	80	4	361	29	10	16	42	1.83
53087--53124	17	2.2	17	100	0	76	15	28	15	39	1.89

Tables:   1

The End!