Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004920.1 Hibiscus syriacus cultivar Beakdansim tig00011079_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1590857
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
File 2 of 7
Found at i:155751 original size:29 final size:30
Alignment explanation
Indices: 155714--155786 Score: 139
Period size: 30 Copynumber: 2.5 Consensus size: 30
155704 TTCTAGAAAT
155714 GTAATTCATTTTCCAG-AATTCAAATTCCA
1 GTAATTCATTTTCCAGTAATTCAAATTCCA
155743 GTAATTCATTTTCCAGTAATTCAAATTCCA
1 GTAATTCATTTTCCAGTAATTCAAATTCCA
155773 GTAATTCATTTTCC
1 GTAATTCATTTTCC
155787 GGAAAACTAA
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
29 16 0.37
30 27 0.63
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.41
Consensus pattern (30 bp):
GTAATTCATTTTCCAGTAATTCAAATTCCA
Found at i:155786 original size:15 final size:15
Alignment explanation
Indices: 155714--155786 Score: 103
Period size: 15 Copynumber: 4.9 Consensus size: 15
155704 TTCTAGAAAT
155714 GTAATTCATTTTCCA
1 GTAATTCATTTTCCA
**
155729 G-AATTCAAATTCCA
1 GTAATTCATTTTCCA
155743 GTAATTCATTTTCCA
1 GTAATTCATTTTCCA
**
155758 GTAATTCAAATTCCA
1 GTAATTCATTTTCCA
155773 GTAATTCATTTTCC
1 GTAATTCATTTTCC
155787 GGAAAACTAA
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
14 12 0.24
15 37 0.76
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.41
Consensus pattern (15 bp):
GTAATTCATTTTCCA
Found at i:157709 original size:34 final size:34
Alignment explanation
Indices: 157666--157733 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
157656 AATTATAGTT
157666 AATATATTGTGTGCTTAAGTATTGATGAGATATA
1 AATATATTGTGTGCTTAAGTATTGATGAGATATA
157700 AATATATTGTGTGCTTAAGTATTGATGAGATATA
1 AATATATTGTGTGCTTAAGTATTGATGAGATATA
157734 TTATTCATGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.03, G:0.21, T:0.41
Consensus pattern (34 bp):
AATATATTGTGTGCTTAAGTATTGATGAGATATA
Found at i:166012 original size:25 final size:27
Alignment explanation
Indices: 165963--166012 Score: 68
Period size: 25 Copynumber: 1.9 Consensus size: 27
165953 TATTACTGAT
* *
165963 ATTTTGTTATATATATGTTTTTATACA
1 ATTTTGTTATATATATGTATATATACA
165990 ATTTT-TTA-ATATATGTATATATA
1 ATTTTGTTATATATATGTATATATA
166013 TATATATCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 13 0.62
26 3 0.14
27 5 0.24
ACGTcount: A:0.34, C:0.02, G:0.06, T:0.58
Consensus pattern (27 bp):
ATTTTGTTATATATATGTATATATACA
Found at i:168044 original size:25 final size:27
Alignment explanation
Indices: 167995--168044 Score: 68
Period size: 25 Copynumber: 1.9 Consensus size: 27
167985 TATTACTGAT
* *
167995 ATTTTGTTATATATATGTTTTTATACA
1 ATTTTGTTATATATATGTATATATACA
168022 ATTTT-TTA-ATATATGTATATATA
1 ATTTTGTTATATATATGTATATATA
168045 TATATATCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 13 0.62
26 3 0.14
27 5 0.24
ACGTcount: A:0.34, C:0.02, G:0.06, T:0.58
Consensus pattern (27 bp):
ATTTTGTTATATATATGTATATATACA
Found at i:170012 original size:2 final size:2
Alignment explanation
Indices: 170005--170071 Score: 116
Period size: 2 Copynumber: 33.5 Consensus size: 2
169995 TTCTCCATTC
170005 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
170047 AT AT AT AT AT CT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
170072 CACACACACA
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 61 1.00
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:178980 original size:6 final size:6
Alignment explanation
Indices: 178955--178991 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
178945 CGCGCGGGAT
* *
178955 ACCACG ACCACA ACCTCG ACCACG ACCACG ACCACG A
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG A
178992 GCCGAGCCGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.35, C:0.49, G:0.14, T:0.03
Consensus pattern (6 bp):
ACCACG
Found at i:178999 original size:5 final size:5
Alignment explanation
Indices: 178989--179017 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
178979 ACCACGACCA
178989 CGAGC CGAGC CGAGC CGAGC CGAGC CGAG
1 CGAGC CGAGC CGAGC CGAGC CGAGC CGAG
179018 ACGGACGGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.21, C:0.38, G:0.41, T:0.00
Consensus pattern (5 bp):
CGAGC
Found at i:183044 original size:6 final size:6
Alignment explanation
Indices: 183033--183067 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
183023 CACGTATTAT
183033 CACGAC CACGAC CACGAC CACGAC CACGAC CACGA
1 CACGAC CACGAC CACGAC CACGAC CACGAC CACGA
183068 GCCGAGCCGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.34, C:0.49, G:0.17, T:0.00
Consensus pattern (6 bp):
CACGAC
Found at i:183191 original size:5 final size:5
Alignment explanation
Indices: 183065--183188 Score: 167
Period size: 5 Copynumber: 24.8 Consensus size: 5
183055 ACCACGACCA
183065 CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC
1 CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC
* * * * *
183115 CGAGC CGAGC CGAGC CGAGC CGAGC CGAGA CGAGA CGAGA CGAGA CGAGA
1 CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC
* * * *
183165 CGAGA CGAGA CGAGA CGAGA CGAG
1 CGAGC CGAGC CGAGC CGAGC CGAG
183189 ACGGACGGCG
Statistics
Matches: 118, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
5 118 1.00
ACGTcount: A:0.27, C:0.32, G:0.40, T:0.00
Consensus pattern (5 bp):
CGAGC
Found at i:188664 original size:17 final size:17
Alignment explanation
Indices: 188642--188675 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
188632 TGTAATTAAG
188642 AATAAAAGAATATGTTT
1 AATAAAAGAATATGTTT
188659 AATAAAAGAATATGTTT
1 AATAAAAGAATATGTTT
188676 CACTAAGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.12, T:0.35
Consensus pattern (17 bp):
AATAAAAGAATATGTTT
Found at i:202150 original size:103 final size:101
Alignment explanation
Indices: 202031--202304 Score: 351
Period size: 97 Copynumber: 2.7 Consensus size: 101
202021 TAAAGCAAGG
*
202031 AAACAGAGAATTAAGCAAACTAACAAACAAATTAAATTCAACCAATCCGATAAGTGTAAGAGAGA
1 AAACAGAGAATTAAGCAAACTAACAAACAAA-TAAATTCAACCAATCTGATAAGTGTAAG-GAGA
*
202096 GAGAGAGAGTAACTCGGCGACGTCACAGAGCTGGCGCA
64 GAGAGAGAGTAACTCGGCAACGTCACAGAGCTGGCGCA
* * *
202134 AAACAGAGAATTAAGCAAACTAACAAACAAACAAAATCCAAACAATCTGATAAGTGT----A-AG
1 AAACAGAGAATTAAGCAAACTAACAAACAAA-TAAATTCAACCAATCTGATAAGTGTAAGGAGAG
* * * * *
202194 CGAGAGACTGACTCGGCAAGGTCACCGAGCTGGCGCA
65 AGAGAGAGTAACTCGGCAACGTCACAGAGCTGGCGCA
* *
202231 AAACAGAGAATTAAGCAAATTAAACAAACAAATAAATTCAACCAATCTGATTAGTGTAAGCGAGA
1 AAACAGAGAATTAAGCAAACT-AACAAACAAATAAATTCAACCAATCTGATAAGTGTAAG-GAGA
*
202296 GAGGGAGAG
64 GAGAGAGAG
202305 AATGAAACTG
Statistics
Matches: 145, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
97 74 0.51
98 11 0.08
102 1 0.01
103 59 0.41
ACGTcount: A:0.46, C:0.18, G:0.21, T:0.15
Consensus pattern (101 bp):
AAACAGAGAATTAAGCAAACTAACAAACAAATAAATTCAACCAATCTGATAAGTGTAAGGAGAGA
GAGAGAGTAACTCGGCAACGTCACAGAGCTGGCGCA
Found at i:203694 original size:28 final size:28
Alignment explanation
Indices: 203611--203697 Score: 83
Period size: 28 Copynumber: 3.1 Consensus size: 28
203601 TATGCAATAT
*
203611 GATATTTAATTTTTT-GT-AT-ACAATTA
1 GATATTTAATTTTTTAATGATGA-AATTA
203637 GATATTTAATTATTTTGTAATTG-TGAAATTA
1 GATATTTAA-T-TTTT-TAA-TGATGAAATTA
*
203668 GATATTTAATTTTTTAATGATGTAATTA
1 GATATTTAATTTTTTAATGATGAAATTA
203696 GA
1 GA
203698 CACTTAACTC
Statistics
Matches: 51, Mismatches: 2, Indels: 14
0.76 0.03 0.21
Matches are distributed among these distances:
26 9 0.18
27 3 0.06
28 16 0.31
29 5 0.10
30 1 0.02
31 16 0.31
32 1 0.02
ACGTcount: A:0.36, C:0.01, G:0.11, T:0.52
Consensus pattern (28 bp):
GATATTTAATTTTTTAATGATGAAATTA
Found at i:203727 original size:14 final size:14
Alignment explanation
Indices: 203708--203734 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
203698 CACTTAACTC
203708 AAAATTGAATTAAT
1 AAAATTGAATTAAT
203722 AAAATTGAATTAA
1 AAAATTGAATTAA
203735 ATTAAATTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAATTGAATTAAT
Found at i:204563 original size:27 final size:26
Alignment explanation
Indices: 204517--204572 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
204507 ATTCTATACT
*
204517 ATAAATATTTTTAAATAATAATAATA
1 ATAAATATTTTTAAATAATAAAAATA
*
204543 ATAAA-ATTTATTAATTAAATAAAAATA
1 ATAAATATTT-TTAAAT-AATAAAAATA
204570 ATA
1 ATA
204573 TAAACAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 4 0.15
26 10 0.38
27 12 0.46
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (26 bp):
ATAAATATTTTTAAATAATAAAAATA
Found at i:212031 original size:44 final size:45
Alignment explanation
Indices: 211957--212043 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 45
211947 GAGGAAGAAG
*
211957 AGTTAAATCTCTTTCCATGTTTTATGAAAATAAGCCACTTGGAAT
1 AGTTAAATCTCTTTCCATGTTTTATAAAAATAAGCCACTTGGAAT
212002 AGTTAAATCTCTTT-CATGTTTTATAAAAATAAGCCACTTGGA
1 AGTTAAATCTCTTTCCATGTTTTATAAAAATAAGCCACTTGGA
212044 TTAACTTCCA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
44 27 0.66
45 14 0.34
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (45 bp):
AGTTAAATCTCTTTCCATGTTTTATAAAAATAAGCCACTTGGAAT
Found at i:214713 original size:30 final size:29
Alignment explanation
Indices: 214677--214737 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
214667 TTCGAAAAAT
214677 CATCGGTGATCGA-TATATTTATCGATCTAA
1 CATCGGTGAT--ATTATATTTATCGATCTAA
* *
214707 CATCGGTTATATTATATTTCTCGATCTAA
1 CATCGGTGATATTATATTTATCGATCTAA
214736 CA
1 CA
214738 CATGTAGCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 1 0.04
29 18 0.64
30 9 0.32
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (29 bp):
CATCGGTGATATTATATTTATCGATCTAA
Found at i:215098 original size:17 final size:18
Alignment explanation
Indices: 215062--215102 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
215052 ATATTATGTA
*
215062 TTTAATTTATTTAAGCAT
1 TTTACTTTATTTAAGCAT
*
215080 TTTACTTTATTTAA-TAT
1 TTTACTTTATTTAAGCAT
215097 TTTACT
1 TTTACT
215103 AATATAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.61
Consensus pattern (18 bp):
TTTACTTTATTTAAGCAT
Found at i:217371 original size:26 final size:24
Alignment explanation
Indices: 217300--217371 Score: 62
Period size: 26 Copynumber: 3.0 Consensus size: 24
217290 TTATATTTGT
217300 ATTTACTTTATTTTGTTAAATTGTA
1 ATTTACTTTATTTTGTTAAATT-TA
*
217325 ATTT--TTTATTATT-TCT-CATTTA
1 ATTTACTTTATT-TTGT-TAAATTTA
217347 ATACTTACTTTATTTTGTTAAATTT
1 AT--TTACTTTATTTTGTTAAATTT
217372 GTTGGACTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 15
0.69 0.04 0.28
Matches are distributed among these distances:
22 4 0.11
23 10 0.27
24 5 0.14
25 7 0.19
26 11 0.30
ACGTcount: A:0.26, C:0.07, G:0.04, T:0.62
Consensus pattern (24 bp):
ATTTACTTTATTTTGTTAAATTTA
Found at i:222464 original size:15 final size:15
Alignment explanation
Indices: 222444--222483 Score: 80
Period size: 15 Copynumber: 2.7 Consensus size: 15
222434 GCTTAACATA
222444 CAATCAACCATGCAC
1 CAATCAACCATGCAC
222459 CAATCAACCATGCAC
1 CAATCAACCATGCAC
222474 CAATCAACCA
1 CAATCAACCA
222484 CACCACAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.42, C:0.40, G:0.05, T:0.12
Consensus pattern (15 bp):
CAATCAACCATGCAC
Found at i:224418 original size:131 final size:130
Alignment explanation
Indices: 224187--224546 Score: 443
Period size: 131 Copynumber: 2.8 Consensus size: 130
224177 GAAAATAGTA
* * * *
224187 ATATCTTTTCATTTTGGTTGGAGTAATAAATGACTGCTCTAAGGCATGAGAGATCATTTATTCTC
1 ATATCTATTCATTTTGATTGGAGTAATAAATGACTGCTTTAAGGCATGAGAGGTCATTTATTCTC
* * * * * *
224252 GATTGAAAATAATTTGATATTATCATTCTCTCTCGAATT-AATATTGATTTTTAAGATGGAATAG
66 GATTGGAAATAATTAGATATTATCATTTTCACTCG-ATTCAATATTGAATTTTAAGACGGAATA-
224316 CG
129 CG
* * * * * *
224318 ATATCTCTTCATTTTGATTTGAGCAATAAATGACTACTTTGAGGCATGAGAGGTCATTTATTTTC
1 ATATCTATTCATTTTGATTGGAGTAATAAATGACTGCTTTAAGGCATGAGAGGTCATTTATTCTC
* * * * *
224383 TATTGGAAATCATTAGATATTATCGTTTTCACTCGATTCGATATTGAATTTTAAGACGGAATATG
66 GATTGGAAATAATTAGATATTATCATTTTCACTCGATTCAATATTGAATTTTAAGACGGAATACG
* * * * *
224448 ATATCTATTCATTTCGATTGGAGTAATAAATGAATGTTTTAAGGTATGATAGGTCATTTATTCTC
1 ATATCTATTCATTTTGATTGGAGTAATAAATGACTGCTTTAAGGCATGAGAGGTCATTTATTCTC
* *
224513 GATTAGAAATAATTAGATATTATCATTTCCACTC
66 GATTGGAAATAATTAGATATTATCATTTTCACTC
224547 TTAAAATTAT
Statistics
Matches: 192, Mismatches: 36, Indels: 3
0.83 0.16 0.01
Matches are distributed among these distances:
130 87 0.45
131 105 0.55
ACGTcount: A:0.31, C:0.12, G:0.16, T:0.41
Consensus pattern (130 bp):
ATATCTATTCATTTTGATTGGAGTAATAAATGACTGCTTTAAGGCATGAGAGGTCATTTATTCTC
GATTGGAAATAATTAGATATTATCATTTTCACTCGATTCAATATTGAATTTTAAGACGGAATACG
Found at i:225517 original size:24 final size:26
Alignment explanation
Indices: 225462--225517 Score: 62
Period size: 24 Copynumber: 2.2 Consensus size: 26
225452 TCGAACTTAA
* *
225462 AAAAAATTTAGAAGTTCGATTGAAGC
1 AAAAAATTTAGAAGCTCAATTGAAGC
**
225488 CTAAAATTT-G-AGCTCAATTGAAGC
1 AAAAAATTTAGAAGCTCAATTGAAGC
225512 AAAAAA
1 AAAAAA
225518 ATAGTTCGCT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
24 16 0.67
25 1 0.04
26 7 0.29
ACGTcount: A:0.48, C:0.11, G:0.16, T:0.25
Consensus pattern (26 bp):
AAAAAATTTAGAAGCTCAATTGAAGC
Found at i:228563 original size:23 final size:23
Alignment explanation
Indices: 228537--228582 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
228527 TTCGATTAGG
* *
228537 AAAAAAGAAGGAGAAAGAAAGAA
1 AAAAAAGAAAGAAAAAGAAAGAA
*
228560 AAAAAAGAAAGAAAAAGAGAGAA
1 AAAAAAGAAAGAAAAAGAAAGAA
228583 CTCACTGCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (23 bp):
AAAAAAGAAAGAAAAAGAAAGAA
Found at i:228566 original size:13 final size:13
Alignment explanation
Indices: 228550--228575 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
228540 AAAGAAGGAG
228550 AAAGAAAGAAAAA
1 AAAGAAAGAAAAA
228563 AAAGAAAGAAAAA
1 AAAGAAAGAAAAA
228576 GAGAGAACTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (13 bp):
AAAGAAAGAAAAA
Found at i:230127 original size:17 final size:18
Alignment explanation
Indices: 230099--230135 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
230089 TATTACCATG
*
230099 TAGAATAAATAAAACCCA
1 TAGAATAAATAAAACACA
230117 TAGAA-AAATAAAACACA
1 TAGAATAAATAAAACACA
230134 TA
1 TA
230136 TGCTTAGCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.65, C:0.14, G:0.05, T:0.16
Consensus pattern (18 bp):
TAGAATAAATAAAACACA
Found at i:231870 original size:53 final size:53
Alignment explanation
Indices: 231775--232086 Score: 412
Period size: 53 Copynumber: 5.9 Consensus size: 53
231765 CGAATGACGT
* * * ** *
231775 GTTCGCTCCCTCTTG-TTTAGGGATTAAAGAACTCGAACAATCTTCTAAAAATGG
1 GTTCGCTCCCTCTTGCTTCAGGGAGT--AGAACTCGAACAATCTTCTGACTACGG
* * * *
231829 GTTCGCTCCCTATTGCTTCAGAGAGTAGAACTCGAATAATCTTCTGATTACGG
1 GTTCGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTGACTACGG
* * * *
231882 GTTCGCTCCCTCTTGCTTCAGGGGGTAGAACTCAAACTATCTTCTGCCTACGG
1 GTTCGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTGACTACGG
* * *
231935 GTTCACTCCCTCTTGCTTCAGGGAGTAAAACTCGAACAATCTTCTGTCTACGG
1 GTTCGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTGACTACGG
*
231988 GTTCGCTCCCTCTTGCTTCAGGGAGTAAAACTCGAACAATCTTCT-ACCTACGG
1 GTTCGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTGA-CTACGG
*
232041 GTTCGCTCCCTCTTGCTTCAGGGAGTAGAAATCGAACAATCTTCTG
1 GTTCGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTG
232087 GTGTGATTCT
Statistics
Matches: 228, Mismatches: 27, Indels: 6
0.87 0.10 0.02
Matches are distributed among these distances:
53 207 0.91
54 14 0.06
55 7 0.03
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.30
Consensus pattern (53 bp):
GTTCGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTGACTACGG
Found at i:232537 original size:42 final size:42
Alignment explanation
Indices: 232458--232788 Score: 162
Period size: 42 Copynumber: 8.1 Consensus size: 42
232448 TCCAAGAAGG
* * *
232458 CTTA-AAATGACCTGGAGGACTT-ATCATC-TCGCTCGAAAGA
1 CTTACAAATGACCCGAAGGATTTCATCATCAT-GCTCGAAAGA
*
232498 CTTACAAATAACCCGAAGGATTTCATCATCATGCTCGAAAGA
1 CTTACAAATGACCCGAAGGATTTCATCATCATGCTCGAAAGA
* * * * *
232540 CTTAC---TGA--TGAATTTG-TTTCA-CTACTCTTCGGT-G-AAGG
1 CTTACAAATGACCCGAA--GGATTTCATC-A-TCAT-GCTCGAAAGA
* *
232578 CTTACAAATTACCCGAAGGATTTAATCATCATGCTCGAAAGA
1 CTTACAAATGACCCGAAGGATTTCATCATCATGCTCGAAAGA
** * *
232620 CTTACTGATGGCCCAAAGGATTTCATCATCATGCTCGAAAGA
1 CTTACAAATGACCCGAAGGATTTCATCATCATGCTCGAAAGA
** ** * * *
232662 CTTAC---TGA-TGGATTTG-TTTCA-CTACTCTTCGGT-G-AAGG
1 CTTACAAATGACCCGA-AGGATTTCATC-A-TCAT-GCTCGAAAGA
* * * * *
232700 CTTACAAATTACTCGAAGGATTTAATCATCATGATCAAAAGA
1 CTTACAAATGACCCGAAGGATTTCATCATCATGCTCGAAAGA
** *
232742 CTTACTGATGGCCCGAAGGATTTCATCATCATGCTCGAAAGA
1 CTTACAAATGACCCGAAGGATTTCATCATCATGCTCGAAAGA
232784 CTTAC
1 CTTAC
232789 TGATGGCACT
Statistics
Matches: 213, Mismatches: 49, Indels: 56
0.67 0.15 0.18
Matches are distributed among these distances:
37 5 0.02
38 29 0.14
39 14 0.07
40 12 0.06
41 27 0.13
42 120 0.56
43 6 0.03
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.29
Consensus pattern (42 bp):
CTTACAAATGACCCGAAGGATTTCATCATCATGCTCGAAAGA
Found at i:232658 original size:122 final size:122
Alignment explanation
Indices: 232453--232882 Score: 560
Period size: 122 Copynumber: 3.4 Consensus size: 122
232443 ACTCTTCCAA
* * * * ** **
232453 GAAGGCTTA-AAATGACCTGGAGGACTT-ATCATC-TCGCTCGAAAGACTTACAAATAACCCGAA
1 GAAGGCTTACAAATTACCCGAAGGATTTAATCATCAT-GCTCGAAAGACTTACTGATGGCCCGAA
232515 GGATTTCATCATCATGCTCGAAAGACTTACTGATGAATTTGTTTCACTACTCTTCGGT
65 GGATTTCATCATCATGCTCGAAAGACTTACTGATGAATTTGTTTCACTACTCTTCGGT
*
232573 GAAGGCTTACAAATTACCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCCCAAAG
1 GAAGGCTTACAAATTACCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCCCGAAG
*
232638 GATTTCATCATCATGCTCGAAAGACTTACTGATGGATTTGTTTCACTACTCTTCGGT
66 GATTTCATCATCATGCTCGAAAGACTTACTGATGAATTTGTTTCACTACTCTTCGGT
* * *
232695 GAAGGCTTACAAATTACTCGAAGGATTTAATCATCATGATCAAAAGACTTACTGATGGCCCGAAG
1 GAAGGCTTACAAATTACCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCCCGAAG
*
232760 GATTTCATCATCATGCTCGAAAGACTTACTGATGGCACTTACTGATAGGTTTGCTTCACTACTCT
66 GATTTCATCATCATGCTCGAAAGACTTAC---T-G-----A-TGA-A--TTTGTTTCACTACTCT
*
232825 TCCGT
118 TCGGT
* *
232830 GAAGGCTTACAAATTACCCGAAAGATTTAATCATCATGCTTGAAAGACTTACT
1 GAAGGCTTACAAATTACCCGAAGGATTTAATCATCATGCTCGAAAGACTTACT
232883 AATGACAGTT
Statistics
Matches: 272, Mismatches: 22, Indels: 17
0.87 0.07 0.05
Matches are distributed among these distances:
120 9 0.03
121 14 0.05
122 175 0.64
123 1 0.00
125 1 0.00
126 1 0.00
131 1 0.00
132 2 0.01
133 1 0.00
135 67 0.25
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (122 bp):
GAAGGCTTACAAATTACCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCCCGAAG
GATTTCATCATCATGCTCGAAAGACTTACTGATGAATTTGTTTCACTACTCTTCGGT
Found at i:232864 original size:93 final size:93
Alignment explanation
Indices: 232753--232981 Score: 341
Period size: 93 Copynumber: 2.5 Consensus size: 93
232743 TTACTGATGG
* *
232753 CCCGAAGGATTTCATCATCATGCTCGAAAGACTTACTGATGGCACTTACTGATAGGTTTGCTTCA
1 CCCGAAAGATTTAATCATCATGCTCGAAAGACTTACTGATGGCACTTACTGATAGGTTTGCTTCA
*
232818 CTACTCTTCCGTGAAGGCTTACAAATTA
66 CTACTCTTCCATGAAGGCTTACAAATTA
* * * * *
232846 CCCGAAAGATTTAATCATCATGCTTGAAAGACTTACTAATGACAGTTACTGATGGGTTTGCTTCA
1 CCCGAAAGATTTAATCATCATGCTCGAAAGACTTACTGATGGCACTTACTGATAGGTTTGCTTCA
* *
232911 CTATTCTTCTATGAAGGCTTACAAATTA
66 CTACTCTTCCATGAAGGCTTACAAATTA
* * *
232939 CCTGAAAGACTTAATCATCATGCTCGAAAGCCTTACTGATGGC
1 CCCGAAAGATTTAATCATCATGCTCGAAAGACTTACTGATGGC
232982 CCAAAGGACT
Statistics
Matches: 120, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 120 1.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.31
Consensus pattern (93 bp):
CCCGAAAGATTTAATCATCATGCTCGAAAGACTTACTGATGGCACTTACTGATAGGTTTGCTTCA
CTACTCTTCCATGAAGGCTTACAAATTA
Found at i:241527 original size:17 final size:18
Alignment explanation
Indices: 241499--241535 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
241489 TATTACCATG
*
241499 TAGAATAAATAAAACCCA
1 TAGAATAAATAAAACACA
241517 TAGAA-AAATAAAACACA
1 TAGAATAAATAAAACACA
241534 TA
1 TA
241536 TGCTTAGCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.65, C:0.14, G:0.05, T:0.16
Consensus pattern (18 bp):
TAGAATAAATAAAACACA
Found at i:243532 original size:2 final size:2
Alignment explanation
Indices: 243525--243549 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
243515 TCATTTGTTT
243525 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
243550 GTGTGTGTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:243554 original size:2 final size:2
Alignment explanation
Indices: 243549--243583 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
243539 TATATATATA
*
243549 TG TG TG TG TG TG TG TG TG TG TG AG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
243584 TTCACTTTCT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.03, C:0.00, G:0.49, T:0.49
Consensus pattern (2 bp):
TG
Found at i:245552 original size:21 final size:20
Alignment explanation
Indices: 245528--245687 Score: 119
Period size: 21 Copynumber: 7.8 Consensus size: 20
245518 CATATTCGCA
*
245528 TTGCGATAGTCCAAGTTCGTG
1 TTGCGATAGTCCAAATTCG-G
* *
245549 TTGCGATAGTCGAAGTTCGCG
1 TTGCGATAGTCCAAATTCG-G
*
245570 TTGCGATTTATTCCAAATTC-G
1 TTGCGA--TAGTCCAAATTCGG
* *
245591 TTGCGATAGTCGAAGTTCGCG
1 TTGCGATAGTCCAAATTCG-G
**
245612 TTGCGATTTTCCAAATTC-G
1 TTGCGATAGTCCAAATTCGG
* **
245631 TTGTGATAGTCGGAATTCGCG
1 TTGCGATAGTCCAAATTCG-G
*
245652 TTGCGATTTATTCCAAATTC-G
1 TTGCGA--TAGTCCAAATTCGG
245673 TTGCGATAGTCCAAA
1 TTGCGATAGTCCAAA
245688 ATCGCAACGA
Statistics
Matches: 109, Mismatches: 22, Indels: 18
0.73 0.15 0.12
Matches are distributed among these distances:
19 31 0.28
21 60 0.55
23 18 0.17
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (20 bp):
TTGCGATAGTCCAAATTCGG
Found at i:245574 original size:42 final size:41
Alignment explanation
Indices: 245522--245683 Score: 222
Period size: 42 Copynumber: 3.9 Consensus size: 41
245512 GATTTACATA
* * *
245522 TTCGCATTGCGA-TAGTCCAAGTTCGTGTTGCGATAGTCGAAG
1 TTCGCGTTGCGATTATTCCAAATTC--GTTGCGATAGTCGAAG
245564 TTCGCGTTGCGATTTATTCCAAATTCGTTGCGATAGTCGAAG
1 TTCGCGTTGCGA-TTATTCCAAATTCGTTGCGATAGTCGAAG
*
245606 TTCGCGTTGCGATT-TTCCAAATTCGTTGTGATAGTCGGAA-
1 TTCGCGTTGCGATTATTCCAAATTCGTTGCGATAGTC-GAAG
245646 TTCGCGTTGCGATTTATTCCAAATTCGTTGCGATAGTC
1 TTCGCGTTGCGA-TTATTCCAAATTCGTTGCGATAGTC
245684 CAAAATCGCA
Statistics
Matches: 110, Mismatches: 5, Indels: 10
0.88 0.04 0.08
Matches are distributed among these distances:
40 33 0.30
41 7 0.06
42 60 0.55
44 10 0.09
ACGTcount: A:0.20, C:0.19, G:0.25, T:0.36
Consensus pattern (41 bp):
TTCGCGTTGCGATTATTCCAAATTCGTTGCGATAGTCGAAG
Found at i:246452 original size:21 final size:21
Alignment explanation
Indices: 246414--246578 Score: 125
Period size: 19 Copynumber: 8.0 Consensus size: 21
246404 AATTTAGACG
*
246414 CGAACTTGGACT--ATCGCAA
1 CGAACTTGGAATAAATCGCAA
*
246433 CGAATTTGGAATAAATCGCAA
1 CGAACTTGGAATAAATCGCAA
* *
246454 CGCGAACTTCGACT--ATCGCAA
1 --CGAACTTGGAATAAATCGCAA
246475 CGAACTTGGAATAAATCGCAA
1 CGAACTTGGAATAAATCGCAA
*
246496 CGCGAACTTGGACT--ATCGCAA
1 --CGAACTTGGAATAAATCGCAA
*
246517 CGAATTTGGAATAAATCGCAA
1 CGAACTTGGAATAAATCGCAA
* *
246538 CGCGAACTTCGACT--ATCGCAA
1 --CGAACTTGGAATAAATCGCAA
*
246559 CGAATTTGG-A-AAATCGCAA
1 CGAACTTGGAATAAATCGCAA
246578 C
1 C
246579 TCGAACTTCG
Statistics
Matches: 116, Mismatches: 16, Indels: 28
0.73 0.10 0.17
Matches are distributed among these distances:
19 45 0.39
21 42 0.36
23 29 0.25
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.21
Consensus pattern (21 bp):
CGAACTTGGAATAAATCGCAA
Found at i:246595 original size:21 final size:20
Alignment explanation
Indices: 246414--246619 Score: 177
Period size: 21 Copynumber: 9.9 Consensus size: 20
246404 AATTTAGACG
246414 CGAACTTGGACTATCGCAA-
1 CGAACTTGGACTATCGCAAC
* *
246433 CGAATTTGGAATAAATCGCAAC
1 CGAACTTGGACT--ATCGCAAC
*
246455 GCGAACTTCGACTATCGCAA-
1 -CGAACTTGGACTATCGCAAC
*
246475 CGAACTTGGAATAAATCGCAAC
1 CGAACTTGGACT--ATCGCAAC
246497 GCGAACTTGGACTATCGCAA-
1 -CGAACTTGGACTATCGCAAC
* *
246517 CGAATTTGGAATAAATCGCAAC
1 CGAACTTGGACT--ATCGCAAC
*
246539 GCGAACTTCGACTATCGCAA-
1 -CGAACTTGGACTATCGCAAC
* **
246559 CGAATTTGGAAAATCGCAAC
1 CGAACTTGGACTATCGCAAC
*
246579 TCGAACTTCGACTATCGCAAC
1 -CGAACTTGGACTATCGCAAC
*
246600 GTGAACTTGGACTATCGCAA
1 -CGAACTTGGACTATCGCAA
246620 TGCGAATATG
Statistics
Matches: 149, Mismatches: 24, Indels: 26
0.75 0.12 0.13
Matches are distributed among these distances:
19 45 0.30
21 75 0.50
23 29 0.19
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.21
Consensus pattern (20 bp):
CGAACTTGGACTATCGCAAC
Found at i:246610 original size:42 final size:42
Alignment explanation
Indices: 246411--246600 Score: 330
Period size: 42 Copynumber: 4.6 Consensus size: 42
246401 ACGAATTTAG
*
246411 ACGCGAACTTGGACTATCGCAACGAATTTGGAATAAATCGCA
1 ACGCGAACTTCGACTATCGCAACGAATTTGGAATAAATCGCA
*
246453 ACGCGAACTTCGACTATCGCAACGAACTTGGAATAAATCGCA
1 ACGCGAACTTCGACTATCGCAACGAATTTGGAATAAATCGCA
*
246495 ACGCGAACTTGGACTATCGCAACGAATTTGGAATAAATCGCA
1 ACGCGAACTTCGACTATCGCAACGAATTTGGAATAAATCGCA
246537 ACGCGAACTTCGACTATCGCAACGAATTTGG-A-AAATCGCA
1 ACGCGAACTTCGACTATCGCAACGAATTTGGAATAAATCGCA
*
246577 ACTCGAACTTCGACTATCGCAACG
1 ACGCGAACTTCGACTATCGCAACG
246601 TGAACTTGGA
Statistics
Matches: 142, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
40 31 0.22
41 1 0.01
42 110 0.77
ACGTcount: A:0.35, C:0.25, G:0.20, T:0.21
Consensus pattern (42 bp):
ACGCGAACTTCGACTATCGCAACGAATTTGGAATAAATCGCA
Found at i:250381 original size:21 final size:21
Alignment explanation
Indices: 250355--250403 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
250345 AGTGCCTAAC
250355 AATAATAAAA-TCGATAGAAAA
1 AATAATAAAACT-GATAGAAAA
*
250376 AATAATAAAACTGATAGAAAT
1 AATAATAAAACTGATAGAAAA
250397 AATAATA
1 AATAATA
250404 TTTCTGGTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 25 0.96
22 1 0.04
ACGTcount: A:0.65, C:0.04, G:0.08, T:0.22
Consensus pattern (21 bp):
AATAATAAAACTGATAGAAAA
Found at i:250690 original size:20 final size:20
Alignment explanation
Indices: 250667--250713 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
250657 CACGGAATGT
250667 AAGATTACCAGTGAGAATAA
1 AAGATTACCAGTGAGAATAA
250687 AAGATTACCAGTGAGAATAA
1 AAGATTACCAGTGAGAATAA
250707 AAGATTA
1 AAGATTA
250714 TCAGGGAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.51, C:0.09, G:0.19, T:0.21
Consensus pattern (20 bp):
AAGATTACCAGTGAGAATAA
Found at i:251471 original size:25 final size:23
Alignment explanation
Indices: 251405--251460 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
251395 TAGTGCTGAT
** * *
251405 TGATTCAGTAAAATAATGCTAAA
1 TGATTCAACAAAACAATGTTAAA
251428 TGATTCAACAAAACAATGTTAAA
1 TGATTCAACAAAACAATGTTAAA
251451 TGATTCAACA
1 TGATTCAACA
251461 TAAAAGTATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.48, C:0.12, G:0.11, T:0.29
Consensus pattern (23 bp):
TGATTCAACAAAACAATGTTAAA
Found at i:252423 original size:16 final size:16
Alignment explanation
Indices: 252397--252434 Score: 67
Period size: 16 Copynumber: 2.3 Consensus size: 16
252387 TCTACTAAAG
252397 CATGATTGGGTAGATAT
1 CATG-TTGGGTAGATAT
252414 CATGTTGGGTAGATAT
1 CATGTTGGGTAGATAT
252430 CATGT
1 CATGT
252435 GAATAAGGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 17 0.81
17 4 0.19
ACGTcount: A:0.26, C:0.08, G:0.29, T:0.37
Consensus pattern (16 bp):
CATGTTGGGTAGATAT
Found at i:269170 original size:59 final size:59
Alignment explanation
Indices: 269033--269177 Score: 204
Period size: 59 Copynumber: 2.4 Consensus size: 59
269023 GAACATATGA
269033 ATAGTCGGAGACCATTTTGTAACTTTTAATAGTCGAAGACTCAACAAAGTAATGCCCCC
1 ATAGTCGGAGACCATTTTGTAACTTTTAATAGTCGAAGACTCAACAAAGTAATGCCCCC
* * * *
269092 ATATTCGAAGATCATTTTGTAACTTTTAATAGTCGATAGACTCAACAAAGTAATG-CCCT
1 ATAGTCGGAGACCATTTTGTAACTTTTAATAGTCGA-AGACTCAACAAAGTAATGCCCCC
*
269151 ATAGTCGGGGGACCATTTGTGT-ACTTT
1 ATAGTC-GGAGACCATTT-TGTAACTTT
269178 ACCCTAAAAA
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
59 41 0.55
60 31 0.41
61 3 0.04
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32
Consensus pattern (59 bp):
ATAGTCGGAGACCATTTTGTAACTTTTAATAGTCGAAGACTCAACAAAGTAATGCCCCC
Found at i:269892 original size:2 final size:2
Alignment explanation
Indices: 269885--269910 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
269875 ATTCAGAATT
269885 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
269911 AGTGATGATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:271767 original size:6 final size:6
Alignment explanation
Indices: 271754--271784 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
271744 GAACTGGAAG
271754 CATG-T CATGTT CATGTT CATGTT CATGTT CA
1 CATGTT CATGTT CATGTT CATGTT CATGTT CA
271785 GTTTCAATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.16
6 21 0.84
ACGTcount: A:0.19, C:0.19, G:0.16, T:0.45
Consensus pattern (6 bp):
CATGTT
Found at i:280387 original size:31 final size:31
Alignment explanation
Indices: 280344--280410 Score: 116
Period size: 31 Copynumber: 2.2 Consensus size: 31
280334 ATGGTCATCT
* *
280344 TCGTCAGTCAGTCAATTATCATATTATACTC
1 TCGTGAGTCAGTCAATTACCATATTATACTC
280375 TCGTGAGTCAGTCAATTACCATATTATACTC
1 TCGTGAGTCAGTCAATTACCATATTATACTC
280406 TCGTG
1 TCGTG
280411 GGATCTAAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.27, C:0.22, G:0.13, T:0.37
Consensus pattern (31 bp):
TCGTGAGTCAGTCAATTACCATATTATACTC
Found at i:292701 original size:3 final size:3
Alignment explanation
Indices: 292695--292782 Score: 97
Period size: 3 Copynumber: 28.7 Consensus size: 3
292685 TTCATTTAAA
* *
292695 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT AAT TAT AAT TACT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
* * *
292741 AAT T-T TAT TATT TAT TAC TAA TAT TAT TAT TAAT TAT TAT TA
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT T-AT TAT TAT TA
292783 CAAACGGGCC
Statistics
Matches: 72, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
2 2 0.03
3 62 0.86
4 8 0.11
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:292759 original size:19 final size:19
Alignment explanation
Indices: 292707--292776 Score: 81
Period size: 19 Copynumber: 3.8 Consensus size: 19
292697 TTATTATTAT
* *
292707 TATTATTATT-ATTATTAT
1 TATTATTATTAATTACTAA
*
292725 TATAATTA-TAATTACTAA
1 TATTATTATTAATTACTAA
* *
292743 TTTTATTATTTATTACTAA
1 TATTATTATTAATTACTAA
292762 TATTATTATTAATTA
1 TATTATTATTAATTA
292777 TTATTACAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
17 1 0.02
18 19 0.45
19 22 0.52
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.59
Consensus pattern (19 bp):
TATTATTATTAATTACTAA
Found at i:294075 original size:20 final size:21
Alignment explanation
Indices: 294038--294078 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
294028 GATATTTTTA
**
294038 TTTTATTATATTGTTAAATAT
1 TTTTATTATATTCATAAATAT
294059 TTTTA-TATATTCATAAATAT
1 TTTTATTATATTCATAAATAT
294079 ACATATAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (21 bp):
TTTTATTATATTCATAAATAT
Found at i:294781 original size:7 final size:7
Alignment explanation
Indices: 294769--294820 Score: 59
Period size: 7 Copynumber: 6.9 Consensus size: 7
294759 CTTTCAATTT
294769 TTTATTA
1 TTTATTA
294776 TTTATTA
1 TTTATTA
*
294783 TTTTTATA
1 TTTAT-TA
294791 TATTATTA
1 T-TTATTA
294799 TTTATTA
1 TTTATTA
294806 TTTTATTTA
1 -TTTA-TTA
294815 TTTATT
1 TTTATT
294821 TTATTCAAGA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
7 19 0.49
8 14 0.36
9 6 0.15
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTATTA
Found at i:294788 original size:16 final size:16
Alignment explanation
Indices: 294767--294822 Score: 60
Period size: 16 Copynumber: 3.2 Consensus size: 16
294757 TTCTTTCAAT
294767 TTTTTATTATTTATTA
1 TTTTTATTATTTATTA
294783 TTTTTA-TATATTATTA
1 TTTTTATTAT-TTATTA
294799 TTTATTATTTTATTTATTTA
1 TTT-TTA--TTATTTA-TTA
294819 TTTT
1 TTTT
294823 ATTCAAGAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
15 3 0.09
16 15 0.44
17 3 0.09
19 4 0.12
20 9 0.26
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (16 bp):
TTTTTATTATTTATTA
Found at i:294789 original size:13 final size:14
Alignment explanation
Indices: 294773--294825 Score: 69
Period size: 13 Copynumber: 4.1 Consensus size: 14
294763 CAATTTTTTA
294773 TTATTTATTATT-T
1 TTATTTATTATTAT
*
294786 TTATATATTATTAT
1 TTATTTATTATTAT
294800 TTA-TTATT-TTAT
1 TTATTTATTATTAT
294812 TTATTTATT-TTAT
1 TTATTTATTATTAT
294825 T
1 T
294826 CAAGAATTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
12 7 0.19
13 25 0.69
14 4 0.11
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (14 bp):
TTATTTATTATTAT
Found at i:294796 original size:20 final size:20
Alignment explanation
Indices: 294765--294825 Score: 67
Period size: 20 Copynumber: 3.1 Consensus size: 20
294755 TTTTCTTTCA
*
294765 ATTTTTTATTATTTATTATT
1 ATTTTATATTATTTATTATT
294785 -TTTATATATTA-TTATTTATT
1 ATTT-TATATTATTTA-TTATT
294805 ATTTTAT-TTATTTATT-TT
1 ATTTTATATTATTTATTATT
294823 ATT
1 ATT
294826 CAAGAATTAA
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
18 5 0.14
19 11 0.31
20 17 0.47
21 3 0.08
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (20 bp):
ATTTTATATTATTTATTATT
Found at i:294819 original size:23 final size:23
Alignment explanation
Indices: 294765--294820 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
294755 TTTTCTTTCA
294765 ATTT-TTTATTATTTATTATTTT
1 ATTTATTTATTATTTATTATTTT
*
294787 -TATATATTATTATTTATTATTTT
1 ATTTAT-TTATTATTTATTATTTT
294810 ATTTATTTATT
1 ATTTATTTATT
294821 TTATTCAAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
21 2 0.07
22 1 0.03
23 22 0.76
24 4 0.14
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (23 bp):
ATTTATTTATTATTTATTATTTT
Found at i:299108 original size:72 final size:72
Alignment explanation
Indices: 299017--299151 Score: 234
Period size: 72 Copynumber: 1.9 Consensus size: 72
299007 ATATAATAAA
* *
299017 GCTTGAGTTATCCCCCTAAAGCAATTGGTTAATAGCCCTGGCTTTATGGATAATATTCAGCTAGT
1 GCTTGAGTTATCCCCCTAAAGCAATTGGTTAATAGCCCCGGCTTTATGGATAATAGTCAGCTAGT
299082 CTGTTAT
66 CTGTTAT
* *
299089 GCTTGAGTTGTCCCTCTAAAGCAATTGGTTAATAGCCCCGGCTTTATGGATAATAGTCAGCTA
1 GCTTGAGTTATCCCCCTAAAGCAATTGGTTAATAGCCCCGGCTTTATGGATAATAGTCAGCTA
299152 ACCCATTATA
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
72 59 1.00
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (72 bp):
GCTTGAGTTATCCCCCTAAAGCAATTGGTTAATAGCCCCGGCTTTATGGATAATAGTCAGCTAGT
CTGTTAT
Found at i:303637 original size:40 final size:40
Alignment explanation
Indices: 303581--303660 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
303571 TGAGCAGAGT
303581 CCACAGAAAAGGATGAATGCGTTGTCAAATGTTTTACATC
1 CCACAGAAAAGGATGAATGCGTTGTCAAATGTTTTACATC
* * *
303621 CCACAGAAAAGTATGAATGTGTTGTCAAGTGTTTTACATC
1 CCACAGAAAAGGATGAATGCGTTGTCAAATGTTTTACATC
303661 TAAGCTGAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (40 bp):
CCACAGAAAAGGATGAATGCGTTGTCAAATGTTTTACATC
Found at i:304081 original size:22 final size:22
Alignment explanation
Indices: 304050--304104 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
304040 ATCTACACTC
**
304050 TTCAAAGATGGTAGATTC-CTTT
1 TTCAAAGATGACAGATTCTC-TT
*
304072 TTTAAAGATGACAGATTCTCTT
1 TTCAAAGATGACAGATTCTCTT
304094 TTCAAAGATGA
1 TTCAAAGATGA
304105 AAGCTTTATC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 27 0.96
23 1 0.04
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.38
Consensus pattern (22 bp):
TTCAAAGATGACAGATTCTCTT
Found at i:304685 original size:113 final size:113
Alignment explanation
Indices: 304508--306135 Score: 2461
Period size: 113 Copynumber: 14.5 Consensus size: 113
304498 CAAAGATTCA
* * *
304508 AATCCATCATTCAATGGATCAACATTTCCAGAG-AGGTTCATAATGAGAAGAACTCATCTGAAGA
1 AATCCATCATTCGATGGATCATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGA
304572 AGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
66 AGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
* * *
304620 AATCCATCATTCAATGGATCAACATTTCCAGAG-AGAGTTCATAATGAGAAGAACTCATCTGAAG
1 AATCCATCATTCGATGGATCATCATTGCCAGAGAAG-GTTCATAATGAGAAGAACTCATCTGAAG
* * * * **
304684 AAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTCA
65 AAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
304733 AATCCATCA-TCTGATGGATCATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAG
1 AATCCATCATTC-GATGGATCATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAG
* * **
304797 AAGGAAGAAG---TTCATAATGAGAAGAACTTGTTCAACTTTTTGTTCA
65 AAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
*
304843 AATCCATCA-TCTGATGGATCATCATTGCCAGAGAAGGTTCATAATGAGAGGAACTCATCTGAAG
1 AATCCATCATTC-GATGGATCATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAG
304907 AAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
65 AAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
304956 AATCCATCA-TCTGATGGATCATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAG
1 AATCCATCATTC-GATGGATCATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAG
* * **
305020 AAGGAAGAAG---TTCATAATGAGAAGAACTTGTTCAACTTTTTGTTCA
65 AAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
*
305066 AATCCATCA-TCTGATGGATCATCATTGCCAGAGAAGGTTCATAATGAGAGGAACTCATCTGAAG
1 AATCCATCATTC-GATGGATCATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAG
* * * **
305130 AAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTCA
65 AAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
305179 AATCCATCA-TCTGATGGATCATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAG
1 AATCCATCATTC-GATGGATCATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAG
*
305243 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
65 AAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
* *
305292 AATTCATCACTT-GATGGATTATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAG
1 AATCCATCA-TTCGATGGATCATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAG
* * * * **
305356 AAGGAAGAAGAAGTTCATAATGAGAATAACTTGTTCAACTTTTTGTTCA
65 AAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
*
305405 AATCCATCA-TCTGATGGATCATCATTGCCAGAAAAGGTTCATAATGAGAAGAACTCATCTGAAG
1 AATCCATCATTC-GATGGATCATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAG
*
305469 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
65 AAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
* * *
305518 AATTCATCACTT-GATGGATTATCATTGCCATAGAAGGTTCATAATGAGAAGAACTCATCTGAAG
1 AATCCATCA-TTCGATGGATCATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAG
305582 AAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
65 AAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
* *
305631 AATTCATCACTT-GATGGATTATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAG
1 AATCCATCA-TTCGATGGATCATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAG
305695 AAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
65 AAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
* *
305744 AATTCATCACTT-GATGGATTATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAG
1 AATCCATCA-TTCGATGGATCATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAG
305808 AAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
65 AAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
* * *
305857 AATTCATCACTT-GATGGATTATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAT
1 AATCCATCA-TTCGATGGATCATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAG
* *
305921 AAAGAAAAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
65 AAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
* * *
305970 AATTCATCACTT-GATGGATTATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAT
1 AATCCATCA-TTCGATGGATCATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAG
*
306034 AAAGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
65 AAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
* * **
306083 AATTCATCACTT-GATGGATTATCATTGCCAGAGAAAATTCATAATGAGAAGAA
1 AATCCATCA-TTCGATGGATCATCATTGCCAGAGAAGGTTCATAATGAGAAGAA
306136 TTTGTTCAAC
Statistics
Matches: 1448, Mismatches: 53, Indels: 29
0.95 0.03 0.02
Matches are distributed among these distances:
110 214 0.15
111 1 0.00
112 37 0.03
113 1192 0.82
114 2 0.00
115 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (113 bp):
AATCCATCATTCGATGGATCATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGA
AGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
Found at i:306124 original size:73 final size:73
Alignment explanation
Indices: 306044--306208 Score: 260
Period size: 73 Copynumber: 2.3 Consensus size: 73
306034 AAAGAAGAAG
* * *
306044 AAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCACTTGATGGATTATCATT
1 AAATTCATAATGAGAAGAATTTGTTCAACCTTTTGCTTGAATTCATCACTTGATGGATCAACATT
306109 GCCAGAG-A
66 GCCAG-GTA
*
306117 AAATTCATAATGAGAAGAATTTGTTCAACCTTTTGCTTGAATTCATCATTTGATGGATCAACATT
1 AAATTCATAATGAGAAGAATTTGTTCAACCTTTTGCTTGAATTCATCACTTGATGGATCAACATT
306182 GCCAGGTA
66 GCCAGGTA
* *
306190 GAGTTCATAATGAGAAGAA
1 AAATTCATAATGAGAAGAA
306209 CTCGTCATCT
Statistics
Matches: 85, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
72 1 0.01
73 84 0.99
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.35
Consensus pattern (73 bp):
AAATTCATAATGAGAAGAATTTGTTCAACCTTTTGCTTGAATTCATCACTTGATGGATCAACATT
GCCAGGTA
Found at i:306509 original size:3 final size:3
Alignment explanation
Indices: 306501--306597 Score: 106
Period size: 3 Copynumber: 31.7 Consensus size: 3
306491 TTCATTTAAA
* *
306501 TAT TAT TAT TAT TAT TAT TAT TAT TAT AAT TAT TAT TAT TAT AAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
306549 AAT TACT AAT T-T TAT TATT TAT TAC TAA TAT TAT TAT TAAT TAT TAT
1 TAT TA-T TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT T-AT TAT TAT
306596 TA
1 TA
306598 CAAACGGGCC
Statistics
Matches: 79, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
2 2 0.03
3 69 0.87
4 8 0.10
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:307916 original size:20 final size:21
Alignment explanation
Indices: 307879--307919 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
307869 GATATTTTTA
**
307879 TTTTATTATATTGTTAAATAT
1 TTTTATTATATTCATAAATAT
307900 TTTTA-TATATTCATAAATAT
1 TTTTATTATATTCATAAATAT
307920 ACATATAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (21 bp):
TTTTATTATATTCATAAATAT
Found at i:310857 original size:22 final size:22
Alignment explanation
Indices: 310814--310858 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
310804 TCATACATGC
310814 ATACATACCTACACATACACAT
1 ATACATACCTACACATACACAT
* *
310836 ATACATGCCTACACATATACAT
1 ATACATACCTACACATACACAT
310858 A
1 A
310859 CAAATATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.44, C:0.29, G:0.02, T:0.24
Consensus pattern (22 bp):
ATACATACCTACACATACACAT
Found at i:311374 original size:20 final size:20
Alignment explanation
Indices: 311349--311393 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
311339 ATGAGTCTAC
*
311349 TAATAGAGTGATT-GGAATTT
1 TAATAGAGTG-TTAAGAATTT
311369 TAATAGAGTGTTAAGAATTT
1 TAATAGAGTGTTAAGAATTT
311389 TAATA
1 TAATA
311394 TTTATATTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 2 0.09
20 21 0.91
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (20 bp):
TAATAGAGTGTTAAGAATTT
Found at i:321336 original size:24 final size:24
Alignment explanation
Indices: 321304--321360 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
321294 CCCCTTGGTT
*
321304 GACATGGAAGGTGGAAAGGTAGGA
1 GACATGGAAGATGGAAAGGTAGGA
*
321328 GACATGGAAGATGGAAAGTTAGGA
1 GACATGGAAGATGGAAAGGTAGGA
*
321352 GACAGGGAA
1 GACATGGAA
321361 TGAAGCGAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.40, C:0.05, G:0.42, T:0.12
Consensus pattern (24 bp):
GACATGGAAGATGGAAAGGTAGGA
Found at i:322054 original size:3 final size:3
Alignment explanation
Indices: 322046--322075 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
322036 CTAATTATAT
*
322046 TTA TTA TTA TTA CTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
322076 CAAATAATAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:334567 original size:14 final size:14
Alignment explanation
Indices: 334548--334584 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
334538 TCCTCATACA
334548 TTGCATAACTGCAT
1 TTGCATAACTGCAT
334562 TTGCATAACTGCAT
1 TTGCATAACTGCAT
334576 TTGCATAAC
1 TTGCATAAC
334585 ATGAGCTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.35
Consensus pattern (14 bp):
TTGCATAACTGCAT
Found at i:341067 original size:51 final size:52
Alignment explanation
Indices: 340985--341118 Score: 225
Period size: 51 Copynumber: 2.6 Consensus size: 52
340975 ATCTATCTGG
*
340985 GGCATCTTAAAGGCTCACATCAGCATGAAAAAGACAGAAGTAATCCATGTG-
1 GGCATCTTAAAGGCTCACATCAGCATAAAAAAGACAGAAGTAATCCATGTGA
* *
341036 GGTATCTTAAAGGCTCACATCAGCATAAAAAAGATAGAAGTAATCCATGTGA
1 GGCATCTTAAAGGCTCACATCAGCATAAAAAAGACAGAAGTAATCCATGTGA
*
341088 GGCATCTTAAAGGCTCACACCAGCATAAAAA
1 GGCATCTTAAAGGCTCACATCAGCATAAAAA
341119 GGTTGGGATA
Statistics
Matches: 77, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
51 48 0.62
52 29 0.38
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.20
Consensus pattern (52 bp):
GGCATCTTAAAGGCTCACATCAGCATAAAAAAGACAGAAGTAATCCATGTGA
Found at i:343186 original size:42 final size:42
Alignment explanation
Indices: 343120--343201 Score: 119
Period size: 42 Copynumber: 2.0 Consensus size: 42
343110 CACAAATTTG
* * *
343120 TAAATCATTTGGGTCATCTATCAGTCTTTCGAGCATGATGTT
1 TAAATCATTCGGGTAATCTATCAGTCTTTCGAGCAAGATGTT
* *
343162 TAAATCCTTCGGGTAATCTGTCAGTCTTTCGAGCAAGATG
1 TAAATCATTCGGGTAATCTATCAGTCTTTCGAGCAAGATG
343202 ATAAGTCCTT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.37
Consensus pattern (42 bp):
TAAATCATTCGGGTAATCTATCAGTCTTTCGAGCAAGATGTT
Found at i:343353 original size:249 final size:249
Alignment explanation
Indices: 342665--343469 Score: 1172
Period size: 249 Copynumber: 3.2 Consensus size: 249
342655 CACAAATTTG
*
342665 TAAATCCTTCGGGTCATCTGTTAGTCTTT-GAGCAAGATGATAAGTCCTTAGGGTCATCCGTCAA
1 TAAATCCTTCGGGTCATCTGTTAGTCTTTCGAGCAAGATGATAAGTCCTTAGGGCCATCCGTCAA
* *
342729 ACCTTTGGGTAGGATGTTTACATATGATTTTCACATGAAAATGAGAAAGCGATTTTCAAAGTTTC
66 ACCTTTGGGTAAGATGTTTACATATGATTTTCGCATGAAAATGAGAAAGCGATTTTCAAAGTTTC
* * *
342794 TCATTTAATATTTTCTA-AAAATGAAATTTTTGAAATGTAAGAAATTTCTTACCCGGTAAATTAT
131 TCATTT-A-ATGTTCTAGAAAATGAAATTTTTGAAAAGTAAGAAATTTCTTACCCAGTAAATTAT
* * * *
342858 TTCCTACAAATTTATAAACCCTTTGGGTCATCTGTAAGTCCTTAGAGCATGAT-TT
194 TTCCCACAAATTTGTAAATCCTTTGGGTCATCTGTAAGTCTTTAGAGCATGATGTT
* * *
342913 CTAAATCATTCGGGTCATCTGTTAGTCTTTCGAGCAAGATGATAAGTCCTTAGGGCCATCTGTTA
1 -TAAATCCTTCGGGTCATCTGTTAGTCTTTCGAGCAAGATGATAAGTCCTTAGGGCCATCCGTCA
*
342978 AACCTTTGGGT-AGATGTTTACATATGATTTTCGCATGAAAATGAGAAAGCGGTTTTCAAAGTTT
65 AACCTTTGGGTAAGATGTTTACATATGATTTTCGCATGAAAATGAGAAAGCGATTTTCAAAGTTT
* * * *
343042 CTCACTTAATGTTCTAGAAAATGAAATTTTTTAAAAGTAAGAATTTTATTACCCAGTAAATTATT
130 CTCATTTAATGTTCTAGAAAATGAAATTTTTGAAAAGTAAGAAATTTCTTACCCAGTAAATTATT
* * * *
343107 TCCCACAAATTTGTAAATCATTTGGGTCATCTATCAGTCTTTCGAGCATGATGTT
195 TCCCACAAATTTGTAAATCCTTTGGGTCATCTGTAAGTCTTTAGAGCATGATGTT
* *
343162 TAAATCCTTCGGGTAATCTGTCAGTCTTTCGAGCAAGATGATAAGTCCTTAGGGCCATCCGTCAA
1 TAAATCCTTCGGGTCATCTGTTAGTCTTTCGAGCAAGATGATAAGTCCTTAGGGCCATCCGTCAA
* *
343227 ACCTTTGGGTAAGATGTTCACATATGATTTTCGCATGAAAATGAGAAAGCAATTTTCAAAGTTTC
66 ACCTTTGGGTAAGATGTTTACATATGATTTTCGCATGAAAATGAGAAAGCGATTTTCAAAGTTTC
* * *
343292 TCATTTAATGTTCAAGAAAATGAAATTTTTGAAAAGTAAGAAGTTTCTTACCTAGTAAATTATTT
131 TCATTTAATGTTCTAGAAAATGAAATTTTTGAAAAGTAAGAAATTTCTTACCCAGTAAATTATTT
* * * *
343357 TCCATAAATTTGTAAATCCTTCGGGTCATCTGTAAGTCTTTTGAGCCA-GATGTT
196 CCCACAAATTTGTAAATCCTTTGGGTCATCTGTAAGTCTTTAGAG-CATGATGTT
* * * * * *
343411 TAAATCTTTAGGGTCATTTATTAGTCTTTCAAGCAAAATGAATAAGTCCTTA-GGCCATC
1 TAAATCCTTCGGGTCATCTGTTAGTCTTTCGAGCAAGATG-ATAAGTCCTTAGGGCCATC
343470 TGTAAGACCT
Statistics
Matches: 499, Mismatches: 51, Indels: 12
0.89 0.09 0.02
Matches are distributed among these distances:
247 7 0.01
248 158 0.32
249 279 0.56
250 55 0.11
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (249 bp):
TAAATCCTTCGGGTCATCTGTTAGTCTTTCGAGCAAGATGATAAGTCCTTAGGGCCATCCGTCAA
ACCTTTGGGTAAGATGTTTACATATGATTTTCGCATGAAAATGAGAAAGCGATTTTCAAAGTTTC
TCATTTAATGTTCTAGAAAATGAAATTTTTGAAAAGTAAGAAATTTCTTACCCAGTAAATTATTT
CCCACAAATTTGTAAATCCTTTGGGTCATCTGTAAGTCTTTAGAGCATGATGTT
Found at i:346729 original size:24 final size:23
Alignment explanation
Indices: 346672--346725 Score: 99
Period size: 23 Copynumber: 2.3 Consensus size: 23
346662 TTAAATACAT
*
346672 AAAAATCTTACTGTATTTTTAAA
1 AAAAATCATACTGTATTTTTAAA
346695 AAAAATCATACTGTATTTTTAAA
1 AAAAATCATACTGTATTTTTAAA
346718 AAAAATCA
1 AAAAATCA
346726 ATACATAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.50, C:0.09, G:0.04, T:0.37
Consensus pattern (23 bp):
AAAAATCATACTGTATTTTTAAA
Found at i:351999 original size:12 final size:12
Alignment explanation
Indices: 351970--352026 Score: 91
Period size: 12 Copynumber: 4.8 Consensus size: 12
351960 CTCGAGACTC
351970 GAGCTCGA--TT
1 GAGCTCGATTTT
351980 GAAGCTCGATTTT
1 G-AGCTCGATTTT
351993 GAGCTCGATTTT
1 GAGCTCGATTTT
352005 GAGCTCGATTTT
1 GAGCTCGATTTT
352017 GAGCTCGATT
1 GAGCTCGATT
352027 CAAGCTCAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
10 1 0.02
11 7 0.16
12 33 0.75
13 3 0.07
ACGTcount: A:0.19, C:0.18, G:0.26, T:0.37
Consensus pattern (12 bp):
GAGCTCGATTTT
Found at i:352360 original size:21 final size:21
Alignment explanation
Indices: 352335--352428 Score: 91
Period size: 21 Copynumber: 4.5 Consensus size: 21
352325 TGGCATAACT
352335 TAAACCCTAACACATAAACCC
1 TAAACCCTAACACATAAACCC
*
352356 TAAACCTTAACACATAAACCC
1 TAAACCCTAACACATAAACCC
* ** *
352377 TAAACTCTAA-ATTTTAAACCT
1 TAAACCCTAACA-CATAAACCC
* * *
352398 TAAATCCTATCACATAAACTC
1 TAAACCCTAACACATAAACCC
*
352419 TAAATCCTAA
1 TAAACCCTAA
352429 ACCTTAAACC
Statistics
Matches: 57, Mismatches: 14, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
20 1 0.02
21 55 0.96
22 1 0.02
ACGTcount: A:0.46, C:0.29, G:0.00, T:0.26
Consensus pattern (21 bp):
TAAACCCTAACACATAAACCC
Found at i:352416 original size:35 final size:35
Alignment explanation
Indices: 352377--352449 Score: 112
Period size: 35 Copynumber: 2.1 Consensus size: 35
352367 ACATAAACCC
**
352377 TAAACTCTAAATTTTAAACCTTAAATCC-TATCACA
1 TAAACTCTAAATCCTAAACCTTAAA-CCTTATCACA
352412 TAAACTCTAAATCCTAAACCTTAAACCTTATCACA
1 TAAACTCTAAATCCTAAACCTTAAACCTTATCACA
352447 TAA
1 TAA
352450 TTAGTTATGA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
34 2 0.06
35 33 0.94
ACGTcount: A:0.44, C:0.25, G:0.00, T:0.32
Consensus pattern (35 bp):
TAAACTCTAAATCCTAAACCTTAAACCTTATCACA
Found at i:352717 original size:14 final size:14
Alignment explanation
Indices: 352700--352740 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
352690 TTTATTCATC
352700 AATAATGTATTTTT
1 AATAATGTATTTTT
352714 AAT-A--TATTTTT
1 AATAATGTATTTTT
*
352725 AATAATGTAATTTT
1 AATAATGTATTTTT
352739 AA
1 AA
352741 AAAATATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
11 10 0.43
12 1 0.04
13 1 0.04
14 11 0.48
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (14 bp):
AATAATGTATTTTT
Found at i:356351 original size:11 final size:10
Alignment explanation
Indices: 356329--356384 Score: 60
Period size: 10 Copynumber: 5.5 Consensus size: 10
356319 ATTTTTTTTT
*
356329 AAAATAAATA
1 AAAATGAATA
356339 AAAATGCAAT-
1 AAAATG-AATA
356349 AAAATGAATTA
1 AAAATGAA-TA
356360 AAAATGAATA
1 AAAATGAATA
* *
356370 AAATTCAATA
1 AAAATGAATA
356380 AAAAT
1 AAAAT
356385 ATAATGTAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
9 2 0.05
10 26 0.67
11 11 0.28
ACGTcount: A:0.68, C:0.04, G:0.05, T:0.23
Consensus pattern (10 bp):
AAAATGAATA
Found at i:356353 original size:20 final size:19
Alignment explanation
Indices: 356328--356384 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 19
356318 TATTTTTTTT
356328 TAAAATAAATAAAAATGCAA
1 TAAAATAAATAAAAATG-AA
*
356348 TAAAATGAATTAAAAATGAA
1 TAAAAT-AAATAAAAATGAA
*
356368 TAAAATTCAATAAAAAT
1 TAAAA-TAAATAAAAAT
356385 ATAATGTAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
20 21 0.66
21 11 0.34
ACGTcount: A:0.67, C:0.04, G:0.05, T:0.25
Consensus pattern (19 bp):
TAAAATAAATAAAAATGAA
Found at i:356945 original size:11 final size:10
Alignment explanation
Indices: 356927--356973 Score: 58
Period size: 11 Copynumber: 4.5 Consensus size: 10
356917 TTTTATTGGA
356927 TTTTATTCAT
1 TTTTATTCAT
356937 TTTTAATTCAT
1 TTTT-ATTCAT
*
356948 TTTTATTGAAT
1 TTTTATT-CAT
*
356959 TTTTATTTAT
1 TTTTATTCAT
356969 TTTTA
1 TTTTA
356974 AAATAATGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
10 14 0.42
11 19 0.58
ACGTcount: A:0.23, C:0.04, G:0.02, T:0.70
Consensus pattern (10 bp):
TTTTATTCAT
Found at i:356951 original size:21 final size:21
Alignment explanation
Indices: 356927--356973 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
356917 TTTTATTGGA
*
356927 TTTTATT-CATTTTTAATTCAT
1 TTTTATTGAATTTTT-ATTCAT
*
356948 TTTTATTGAATTTTTATTTAT
1 TTTTATTGAATTTTTATTCAT
356969 TTTTA
1 TTTTA
356974 AAATAATGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 17 0.74
22 6 0.26
ACGTcount: A:0.23, C:0.04, G:0.02, T:0.70
Consensus pattern (21 bp):
TTTTATTGAATTTTTATTCAT
Found at i:357838 original size:31 final size:31
Alignment explanation
Indices: 357803--357868 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
357793 TGTAATATAA
*
357803 TCCCTCAACATTTAGTACGTTT-ACAATATGG
1 TCCCTCAACATTTAGTACATTTGA-AATATGG
* *
357834 TCCCTCAATATTTAGTCCATTTGAAATATGG
1 TCCCTCAACATTTAGTACATTTGAAATATGG
357865 TCCC
1 TCCC
357869 CGATGTAACT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
31 30 0.97
32 1 0.03
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.36
Consensus pattern (31 bp):
TCCCTCAACATTTAGTACATTTGAAATATGG
Found at i:362352 original size:23 final size:23
Alignment explanation
Indices: 362305--362354 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
362295 AATAACATAT
* **
362305 TAGGTAGCGCTTATATAAGGTAA
1 TAGGTAGCGATTATATAAGAAAA
*
362328 TAGGTAGCGATTATATAATAAAA
1 TAGGTAGCGATTATATAAGAAAA
362351 TAGG
1 TAGG
362355 CATTTAACCG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.40, C:0.06, G:0.24, T:0.30
Consensus pattern (23 bp):
TAGGTAGCGATTATATAAGAAAA
Found at i:362370 original size:87 final size:87
Alignment explanation
Indices: 362268--362428 Score: 259
Period size: 87 Copynumber: 1.9 Consensus size: 87
362258 TATATTATAT
* * * * *
362268 CATTTAATCGAAAATATTATTAAGTACAATAACATATTAGGTAGCGCTTATATAAGGTAATAGGT
1 CATTTAACCGAAAATATTATCAAGTACAATAACATATTAGGTAGAGCTTATATAAGATAATAAGT
362333 AGCGATTATATAATAAAATAGG
66 AGCGATTATATAATAAAATAGG
*
362355 CATTTAACCGAAAATATTATCAAGTACAATAACATATTAGGTAGAGCTTATATAATATAATAAGT
1 CATTTAACCGAAAATATTATCAAGTACAATAACATATTAGGTAGAGCTTATATAAGATAATAAGT
*
362420 AGCGCTTAT
66 AGCGATTAT
362429 TTTGACCTAT
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
87 67 1.00
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.32
Consensus pattern (87 bp):
CATTTAACCGAAAATATTATCAAGTACAATAACATATTAGGTAGAGCTTATATAAGATAATAAGT
AGCGATTATATAATAAAATAGG
Found at i:362801 original size:199 final size:196
Alignment explanation
Indices: 362425--363148 Score: 733
Period size: 199 Copynumber: 3.6 Consensus size: 196
362415 TAAGTAGCGC
* * * * * * *
362425 TTATTTTGACCTATTTTATAAGT-AAATCGGTATATTTATACCGGTAACATTACAAATTTACCTA
1 TTATTTAGACCTATTTTCTTA-TAAAACCGGTATATTTATA-CGGTTACATTATAAATTTACATA
* *
362489 TTACATTATAATTATCGGTTTCGATATTTTAT-GGATCGATACAATTT--TAAATGTATCGACAC
64 TTACATTATAATTATCGGTTTCGATGTTTT-TGGGATCGATAC-TTTTAATAAATGTATCGACAC
* *
362551 TTTATGCGTGCATCTCG-TTGGACATTCATTTTGGAAACAAGTATCGACACAAACTTAAATAGTG
127 TTTATGCGTGCACCTCGTTTGG-CATTC-TTTTGGAAAAAAGTATCGACACAAA-TTAAATAGTG
362615 TCGATACA
189 TCGATACA
* * * * *
362623 TTATTTAGACCTATTTTTTTATAAAACCGGAATATTTCTATCGGGTACATTATAAATTTACCTAT
1 TTATTTAGACCTATTTTCTTATAAAACCGGTATATTTATA-CGGTTACATTATAAATTTACATAT
* * * *
362688 CACA-TAGTAATTATTGATTTCGTTGTTTTTGGGATCGATACTTTTAATAAATGTATCGACACTT
65 TACATTA-TAATTATCGGTTTCGATGTTTTTGGGATCGATACTTTTAATAAATGTATCGACACTT
* * *
362752 TATGCGTGCACCT-GTTTGGCATTCTTTATGGAAAAAATGTATCGACACAAATTTAGTAAGTGTT
129 TATGCGTGCACCTCGTTTGGCATTCTTT-TGGAAAAAA-GTATCGACACAAATTAAAT-AGTGTC
*
362816 GATACT
191 GATACA
* *
362822 TTA-TGATGACCTATTTTCTTATAAAACCGGTATATTTATACCGGTTACATTGTAAATTTACATA
1 TTATTTA-GACCTATTTTCTTATAAAACCGGTATATTTATA-CGGTTACATTATAAATTTACATA
** * *
362886 TTACATTATAATTATCGGTTTCGAT-TTTATTGGGATTAATAGTTTTAATAATTGTATCGACACT
64 TTACATTATAATTATCGGTTTCGATGTTT-TTGGGATCGATACTTTTAATAAATGTATCGACACT
* *
362950 TTATGCGTGCACCTCGTTTGGGCATTCATTCT-GAACAATAAGTA-CAACACAAATTACACA-AG
128 TTATGCGTGCACCTCGTTT-GGCATTC-TTTTGGAA-AA-AAGTATCGACACAAATTA-A-ATAG
363012 TGTCGATACA
187 TGTCGATACA
* * * * * * *
363022 TTATGTT-GACCTGTTTTCTAAT-TAACCGGTATATGTATACTAGTTACATTGTTAATTTACATA
1 TTAT-TTAGACCTATTTTCTTATAAAACCGGTATATTTATAC-GGTTACATTATAAATTTACATA
* *
363085 TTACATTATAATTATTGGTTTCGATGTTTTCTTGGG-TCGATACTTTTAGA-AAAAGTATCGACA
64 TTACATTATAATTATCGGTTTCGATG-TTT-TTGGGATCGATACTTTTA-ATAAATGTATCGACA
363148 C
126 C
363149 ATATTTAGGT
Statistics
Matches: 443, Mismatches: 58, Indels: 48
0.81 0.11 0.09
Matches are distributed among these distances:
197 10 0.02
198 108 0.24
199 231 0.52
200 66 0.15
201 23 0.05
202 5 0.01
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.40
Consensus pattern (196 bp):
TTATTTAGACCTATTTTCTTATAAAACCGGTATATTTATACGGTTACATTATAAATTTACATATT
ACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTTTAATAAATGTATCGACACTTTA
TGCGTGCACCTCGTTTGGCATTCTTTTGGAAAAAAGTATCGACACAAATTAAATAGTGTCGATAC
A
Found at i:366831 original size:23 final size:22
Alignment explanation
Indices: 366771--366834 Score: 74
Period size: 23 Copynumber: 2.8 Consensus size: 22
366761 CAACTTGTAT
366771 AATTGCACCGAAGTGCCACGTAG
1 AATTGCACCG-AGTGCCACGTAG
* * *
366794 ACTTGTACCAGAGTGCCGCGTAG
1 AATTGCACC-GAGTGCCACGTAG
366817 AATTGCACCGTAGTGCCA
1 AATTGCACCG-AGTGCCA
366835 TATAATAATG
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
22 1 0.03
23 31 0.94
24 1 0.03
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.20
Consensus pattern (22 bp):
AATTGCACCGAGTGCCACGTAG
Found at i:370763 original size:200 final size:199
Alignment explanation
Indices: 370302--371471 Score: 1303
Period size: 201 Copynumber: 5.8 Consensus size: 199
370292 CATTATTTAT
* ** * * *
370302 AAGTATCGACACAAA-TCTAAAACGTGTCGATACATTACGTTCACCTATTTTCTCATAAAATCGG
1 AAGTATCGACACAAATTC-AAAA-GTGTCGATACATTATGTAGACCTATTCTCACATAAAACCGG
* * * *
370366 TACATTTATACCAGTTACATTGTAAATTTACCTATTGCATTATAATTATCGATTTCGATGTTTTT
64 TATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTT
* *
370431 GGGATCGATACTTTTTAAAAAATGTATCGACACTTTATGCGTGCAACCCTTTT-GGCATTCATTT
129 GGGATCGATACTTTTT-ATAAATGTATCGACACTTTATGCGTGC-ACCCTTTTGGGCATTCATTC
370495 TGGACAAA
192 TGGACAAA
* * ** * *
370503 AAGTATCGACACAAA-TCTAAAACATGTCAATACATTATGTTCACCTATTTTAACATAAAACCGG
1 AAGTATCGACACAAATTC-AAAA-GTGTCGATACATTATGTAGACCTATTCTCACATAAAACCGG
*
370567 TATATTTATACCGGTTACATTGTAAATTTACCTATTATATTATAATTATCGGTTTCGATGTTTTT
64 TATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTT
* * * **
370632 GGGATTGATACTTTTTATAAATGTATCGACACTTTATTCGTTCACCCTTTTGAACATTCATTCTG
129 GGGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTGCACCCTTTTGGGCATTCATTCTG
370697 GACAAA
194 GACAAA
* * * * *
370703 ACGTATCGACACATCATTCAAAAGTGTCGACACATTATGTAGACCTATTCTAACATAAAACCGAT
1 AAGTATCGACACA-AATTCAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACCGGT
* * ** * * * * * *
370768 ATATTTATATCGGTTATATTACAAAATTACCTATTACATTATATTTATGGGTTTTGATATTTTAG
65 ATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTG
* * * * * *
370833 GGATCAATACTGTTTA-AACATGTATCGACACTTTATGGGTGCACCCTTTTTGG-ATTTTCCTTG
130 GGATCGATACTTTTTATAA-ATGTATCGACACTTTATGCGTGCACCCTTTTGGGCA--TTCATTC
*
370896 TGGACCAA
192 TGGACAAA
* * * * * ** * * * * *
370904 AAGTATAGACACAAATTCCACAAGTGTCGATATATTATTTATATTTATTTTCTCAAAAAACTGAT
1 AAGTATCGACACAAATT-CAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACCGGT
* * *
370969 TTATTTATACCGATTACATTGTAAATTTACCTATTATATTATAATTATCGGTTTCGATGTTTTTG
65 ATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTG
* * *
371034 AGATCGATAATTTTTATAAATGTATCGACACTTTATGCGTTCACCCTTTTGGGCATTCATTCTGG
130 GGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTGCACCCTTTTGGGCATTCATTCTGG
371099 ACAAA
195 ACAAA
* * * *
371104 AAGTATCGACATAACATTCAAAAGTTTCGACACATTATGTAGACCTATTCTCACATAAAACCAGT
1 AAGTATCGACACAA-ATTCAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACCGGT
* * * ** * *
371169 ATATTTATATCGATTATATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTTTG
65 ATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTG
** * * * *
371234 GGATCGATACTTTTT-TAAAAAATATCGACACTTTATGGGTGCACGCTTTTTGGGCATTCCTTTT
130 GGATCGATACTTTTTAT-AAATGTATCGACACTTTATGCGTGCAC-CCTTTTGGGCATTCATTCT
371298 GGACAAA
193 GGACAAA
* * * *
371305 CAGTATCGACACAAATTCCAGAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACCTGT
1 AAGTATCGACACAAATT-CAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACCGGT
* * * * * *
371370 TTAGTTATACTGGTTACATTGTAAATTTACCTATTACATTATATTTAT-GGATCTCGATGTTTCT
65 ATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGG-TTTCGATGTTTTT
*
371434 GGAATCGATACTTTTTA-AAACTGTATCGACACTTTATG
129 GGGATCGATACTTTTTATAAA-TGTATCGACACTTTATG
371472 GGAAACTTTA
Statistics
Matches: 810, Mismatches: 143, Indels: 32
0.82 0.15 0.03
Matches are distributed among these distances:
199 12 0.01
200 343 0.42
201 450 0.56
202 5 0.01
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (199 bp):
AAGTATCGACACAAATTCAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACCGGTA
TATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGG
GATCGATACTTTTTATAAATGTATCGACACTTTATGCGTGCACCCTTTTGGGCATTCATTCTGGA
CAAA
Found at i:371050 original size:401 final size:396
Alignment explanation
Indices: 370393--371471 Score: 1434
Period size: 401 Copynumber: 2.7 Consensus size: 396
370383 CATTGTAAAT
* * *
370393 TTACCTATTGCATTATAATTATCGATTTCGATGTTTTTGGGATCGATACTTTTTAAAAAATGTAT
1 TTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGATACTTTTT--AAAATGTAT
* * * *
370458 CGACACTTTATGCGTGCAACCC-TTTTGGCATTCATTTTGGACAAAAAGTATCGACACAAA-TCT
64 CGACACTTTATGGGTGC-ACCCTTTTTGG-ATTCCTTTTGGACCAAAAGTATCGACACAAATTCC
* * ** * * *
370521 AAAACATGTCAATACATTATGTT-CACCTATTTTAACATAAAACCGGTATATTTATACCGGTTAC
127 AAAA-GTGTCGATACATTAT-TTACACCTATTTTCTCA-AAAAACTGTTTATTTATACCGGTTAC
*
370585 ATTGTAAATTTACCTATTATATTATAATTATCGGTTTCGATGTTTTTGGGATTGATACTTTTTAT
189 ATTGTAAATTTACCTATTATATTATAATTATCGGTTTCGATGTTTTT-GGATCGATACTTTTTAT
* *
370650 AAATGTATCGACACTTTATTCGTTCACCCTTTTGAACATTCATTCTGGACAAAACGTATCGACAC
253 AAATGTATCGACACTTTATGCGTTCACCCTTTTGAACATTCATTCTGGACAAAAAGTATCGACAC
*
370715 ATCATTCAAAAGTGTCGACACATTATGTAGACCTATTCTAACATAAAACC-GATATATTTATATC
318 AACATTCAAAAGTGTCGACACATTATGTAGACCTATTCTAACATAAAACCAG-TATATTTATATC
*
370779 GGTTATATTACAAAA
382 GATTATATTACAAAA
* * * * * *
370794 TTACCTATTACATTATATTTATGGGTTTTGATATTTTAGGGATCAATACTGTTTAAACATGTATC
1 TTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGATACTTTTTAAA-ATGTATC
* *
370859 GACACTTTATGGGTGCACCCTTTTTGGATTTTCCTTGTGGACCAAAAGTATAGACACAAATTCCA
65 GACACTTTATGGGTGCACCCTTTTTGGA--TTCCTTTTGGACCAAAAGTATCGACACAAATTCCA
* * * ** *
370924 CAAGTGTCGATATATTATTTATATTTATTTTCTCAAAAAACTGATTTATTTATACCGATTACATT
128 AAAGTGTCGATACATTATTTACACCTATTTTCTCAAAAAACTG-TTTATTTATACCGGTTACATT
*
370989 GTAAATTTACCTATTATATTATAATTATCGGTTTCGATGTTTTTGAGATCGATAATTTTTATAAA
192 GTAAATTTACCTATTATATTATAATTATCGGTTTCGATGTTTTTG-GATCGATACTTTTTATAAA
** *
371054 TGTATCGACACTTTATGCGTTCACCCTTTTGGGCATTCATTCTGGACAAAAAGTATCGACATAAC
256 TGTATCGACACTTTATGCGTTCACCCTTTTGAACATTCATTCTGGACAAAAAGTATCGACACAAC
* *
371119 ATTCAAAAGTTTCGACACATTATGTAGACCTATTCTCACATAAAACCAGTATATTTATATCGATT
321 ATTCAAAAGTGTCGACACATTATGTAGACCTATTCTAACATAAAACCAGTATATTTATATCGATT
371184 ATATTACAAAA
386 ATATTACAAAA
**
371195 TTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGATACTTTTTTAAAAAATATC
1 TTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGATAC-TTTTTAAAATGTATC
*
371260 GACACTTTATGGGTGCACGCTTTTTGGGCATTCCTTTTGGA-CAAACAGTATCGACACAAATTCC
65 GACACTTTATGGGTGCACCCTTTTT-GG-ATTCCTTTTGGACCAAA-AGTATCGACACAAATTCC
* * * * * * *
371324 AGAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACCTGTTTAGTTATACTGGTTACAT
127 AAAAGTGTCGATACATTATTTACACCTATTTTCTCA-AAAAACTGTTTATTTATACCGGTTACAT
* * * *
371389 TGTAAATTTACCTATTACATTATATTTAT-GGATCTCGATGTTTCTGGAATCGATACTTTTTA-A
191 TGTAAATTTACCTATTATATTATAATTATCGG-TTTCGATGTTTTTGG-ATCGATACTTTTTATA
371452 AACTGTATCGACACTTTATG
254 AA-TGTATCGACACTTTATG
371472 GGAAACTTTA
Statistics
Matches: 595, Mismatches: 66, Indels: 34
0.86 0.09 0.05
Matches are distributed among these distances:
399 8 0.01
400 47 0.08
401 517 0.87
402 22 0.04
403 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.39
Consensus pattern (396 bp):
TTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGATACTTTTTAAAATGTATCG
ACACTTTATGGGTGCACCCTTTTTGGATTCCTTTTGGACCAAAAGTATCGACACAAATTCCAAAA
GTGTCGATACATTATTTACACCTATTTTCTCAAAAAACTGTTTATTTATACCGGTTACATTGTAA
ATTTACCTATTATATTATAATTATCGGTTTCGATGTTTTTGGATCGATACTTTTTATAAATGTAT
CGACACTTTATGCGTTCACCCTTTTGAACATTCATTCTGGACAAAAAGTATCGACACAACATTCA
AAAGTGTCGACACATTATGTAGACCTATTCTAACATAAAACCAGTATATTTATATCGATTATATT
ACAAAA
Found at i:371492 original size:15 final size:15
Alignment explanation
Indices: 371472--371510 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
371462 ACACTTTATG
*
371472 GGAAACTTTAAGTTT
1 GGAAACTTTAAGTAT
*
371487 GGAAACTTTATGTAT
1 GGAAACTTTAAGTAT
*
371502 GAAAACTTT
1 GGAAACTTT
371511 GTTGTGGAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.36, C:0.08, G:0.18, T:0.38
Consensus pattern (15 bp):
GGAAACTTTAAGTAT
Found at i:372500 original size:162 final size:162
Alignment explanation
Indices: 372332--372631 Score: 510
Period size: 162 Copynumber: 1.9 Consensus size: 162
372322 ATTTTGAGAC
* * *
372332 CGGTTTTTTCATATTTTTACCTGTAATATCGTTGTGGACCGATACATTGTTATAAAGTATCGACA
1 CGGTTTTGTCATATTTTTACCTGTAATATCGTTATGGACCGATACATTGTTATAAAATATCGACA
**
372397 CTTTATAGGTGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTATCGATACTTATATTAAAGTAT
66 CTTTATAGGCACTAAAACTGCTTCTCTTTTAAATTCACAAAGTATCGATACTTATATTAAAGTAT
372462 CGACACTTTAAATATATCCGATCGCTCTATAT
131 CGACACTTTAAATATATCCGATCGCTCTATAT
* * *
372494 CGGTTTTGTCATATTTTTACCTGTCATATCGTTATGGATCGATACATTTTTATAAAATATCGACA
1 CGGTTTTGTCATATTTTTACCTGTAATATCGTTATGGACCGATACATTGTTATAAAATATCGACA
*
372559 CTTTATAGGCACTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACTTATATTAAAGTAT
66 CTTTATAGGCACTAAAACTGCTTCTCTTTTAAATTCACAAAGTATCGATACTTATATTAAAGTAT
*
372624 TGACACTT
131 CGACACTT
372632 ATATTAAAGT
Statistics
Matches: 128, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
162 128 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (162 bp):
CGGTTTTGTCATATTTTTACCTGTAATATCGTTATGGACCGATACATTGTTATAAAATATCGACA
CTTTATAGGCACTAAAACTGCTTCTCTTTTAAATTCACAAAGTATCGATACTTATATTAAAGTAT
CGACACTTTAAATATATCCGATCGCTCTATAT
Found at i:372631 original size:20 final size:20
Alignment explanation
Indices: 372597--372651 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
372587 TTAAATTCAC
* *
372597 AAAGTGTCGATACTTATATT
1 AAAGTATCGACACTTATATT
*
372617 AAAGTATTGACACTTATATT
1 AAAGTATCGACACTTATATT
372637 AAAGTATCGACACTT
1 AAAGTATCGACACTT
372652 TCAATATATC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (20 bp):
AAAGTATCGACACTTATATT
Found at i:372816 original size:182 final size:181
Alignment explanation
Indices: 372628--373122 Score: 629
Period size: 180 Copynumber: 2.7 Consensus size: 181
372618 AAGTATTGAC
* * ** * * *
372628 ACTTATATTAAAGTATCGACACTTTCAATATATCCGGTCGCTCTATAAAGATTTTGTCCTTTAGA
1 ACTTATATTAAAGTATCGACACTTTCAATATATCCGGTAGCTCTTTACCGGTTTTGTCTTTTCGA
* * * *
372693 TACCGGTTTTTTCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTGTTATAAAATATTG
66 TACCAGTTTTGTCATATTTTTATCTGTTATATCGTTGTGGATCGATACATT-TTATAAAATATCG
*
372758 ACACTTTATAGAAGCTAAAACCGATTCTCTTTTAAATTCACAAAGTGTCGAT
130 ACACTTTATAGAAGCTAAAACCGATTCTCCTTTAAATTCACAAAGTGTCGAT
** *
372810 ACTTATATTAAAGTATCGACACTTTCAATATATCTAGTAGCGCTTTACCGGTTTTGTCTTTTCGA
1 ACTTATATTAAAGTATCGACACTTTCAATATATCCGGTAGCTCTTTACCGGTTTTGTCTTTTCGA
* * *
372875 AACCAATTTTGTC--ATTTTTATCTGTTATATCATTGTGGATCGATACATATTTATAAAGA-ATC
66 TACCAGTTTTGTCATATTTTTATCTGTTATATCGTTGTGGATCGATACAT-TTTATAAA-ATATC
** * * * *
372937 GACACTTTATAGGCGCTAAAACTGCTTCTCCTTTAAATTCACAATGTGTTGAT
129 GACACTTTATAGAAGCTAAAACCGATTCTCCTTTAAATTCACAAAGTGTCGAT
*
372990 ACTTATATTAAAGTATTGACACTTTCAATATATCCGGTAG-TGCTTTACCGGTTTTGTCTTTTCG
1 ACTTATATTAAAGTATCGACACTTTCAATATATCCGGTAGCT-CTTTACCGGTTTTGTCTTTTCG
* * * * * * *
373054 TTACCTGTTTTGTCATATTTTTTTTTGTTATATTGATGTGGATCGATACATTTTTATAAAGTATC
65 ATACCAGTTTTGTCATATTTTTATCTGTTATATCGTTGTGGATCGATACA-TTTTATAAAATATC
373119 GACA
129 GACA
373123 TAAACCGACA
Statistics
Matches: 268, Mismatches: 38, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
180 157 0.59
181 2 0.01
182 108 0.40
183 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (181 bp):
ACTTATATTAAAGTATCGACACTTTCAATATATCCGGTAGCTCTTTACCGGTTTTGTCTTTTCGA
TACCAGTTTTGTCATATTTTTATCTGTTATATCGTTGTGGATCGATACATTTTATAAAATATCGA
CACTTTATAGAAGCTAAAACCGATTCTCCTTTAAATTCACAAAGTGTCGAT
Found at i:373270 original size:2 final size:2
Alignment explanation
Indices: 373265--373300 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
373255 TAATAACATC
373265 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
373301 TATCGTATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:374427 original size:21 final size:21
Alignment explanation
Indices: 374398--374450 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
374388 ATTCTGACTA
374398 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTCCAAAT
* *
374419 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTTCCAAAT
*
374440 TCGCAATGCGA
1 TCGCATTGCGA
374451 ATACGTAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.36
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCAAAT
Found at i:374503 original size:20 final size:20
Alignment explanation
Indices: 374440--374573 Score: 187
Period size: 20 Copynumber: 6.7 Consensus size: 20
374430 TTTTCCTAAT
374440 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* * * ** *
374460 TCGAAACGCAAATTTGAAAAA
1 TCGCAATGCGAATACG-TAAA
374481 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
*
374501 TCGCAATGCGAATATGTAAA
1 TCGCAATGCGAATACGTAAA
374521 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
374541 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
*
374561 TCGCAACGCGAAT
1 TCGCAATGCGAAT
374574 CTGACTATCG
Statistics
Matches: 98, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
20 84 0.86
21 14 0.14
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.20
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:374559 original size:60 final size:61
Alignment explanation
Indices: 374440--374591 Score: 191
Period size: 60 Copynumber: 2.5 Consensus size: 61
374430 TTTTCCTAAT
* * * * **
374440 TCGCAATGCGAATACGTAAATCGAAACGCAAATTTGAAAAATCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATATGTAAATCGCAATGCGAATACGAAAAATCGCAATGCGAATACGTAAA
*
374501 TCGCAATGCGAATATGTAAATCGCAATGCGAATACG-TAAATCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATATGTAAATCGCAATGCGAATACGAAAAATCGCAATGCGAATACGTAAA
* * *
374561 TCGCAACGCGAATCTG-ACTATCGCAATGCGA
1 TCGCAATGCGAATATGTA-AATCGCAATGCGA
374592 TTTACATAGC
Statistics
Matches: 80, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
59 1 0.01
60 49 0.61
61 30 0.38
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.20
Consensus pattern (61 bp):
TCGCAATGCGAATATGTAAATCGCAATGCGAATACGAAAAATCGCAATGCGAATACGTAAA
Found at i:375218 original size:20 final size:20
Alignment explanation
Indices: 375181--375238 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
375171 GATTCTTGCG
**
375181 TTGCGATAGTCAAATTCGCA
1 TTGCGATAGTCATTTTCGCA
**
375201 TTGCGATAGTCATTTTCGTG
1 TTGCGATAGTCATTTTCGCA
**
375221 TTGCGATTTTCATTTTCG
1 TTGCGATAGTCATTTTCG
375239 TGTTGCGATT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.19, C:0.17, G:0.21, T:0.43
Consensus pattern (20 bp):
TTGCGATAGTCATTTTCGCA
Found at i:375239 original size:20 final size:20
Alignment explanation
Indices: 375210--375249 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
375200 ATTGCGATAG
375210 TCATTTTCGTGTTGCGATTT
1 TCATTTTCGTGTTGCGATTT
375230 TCATTTTCGTGTTGCGATTT
1 TCATTTTCGTGTTGCGATTT
375250 AAAGTTTCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.10, C:0.15, G:0.20, T:0.55
Consensus pattern (20 bp):
TCATTTTCGTGTTGCGATTT
Found at i:375257 original size:20 final size:20
Alignment explanation
Indices: 375214--375257 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
375204 CGATAGTCAT
** *
375214 TTTCGTGTTGCGATTTTCAT
1 TTTCGTGTTGCGATTTAAAG
375234 TTTCGTGTTGCGATTTAAAG
1 TTTCGTGTTGCGATTTAAAG
375254 TTTC
1 TTTC
375258 AGAAACTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.14, C:0.14, G:0.20, T:0.52
Consensus pattern (20 bp):
TTTCGTGTTGCGATTTAAAG
Found at i:377155 original size:20 final size:20
Alignment explanation
Indices: 377130--377181 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
377120 AGAATAGTTT
*
377130 ACTATCACAATGCGAAAATG
1 ACTATCACAACGCGAAAATG
*
377150 ACTATCGCAACGCGAAAATG
1 ACTATCACAACGCGAAAATG
*
377170 ACTATCGCAACG
1 ACTATCACAACG
377182 AGAGAATCGC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.40, C:0.25, G:0.17, T:0.17
Consensus pattern (20 bp):
ACTATCACAACGCGAAAATG
Found at i:377245 original size:20 final size:20
Alignment explanation
Indices: 377220--377287 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
377210 CAACAACAAA
377220 ATCGCAACACGAAAATGACT
1 ATCGCAACACGAAAATGACT
**
377240 ATCGCAATGCGAAAATGACT
1 ATCGCAACACGAAAATGACT
*
377260 ATCGCAATACGAAAATGACT
1 ATCGCAACACGAAAATGACT
377280 ATCGCAAC
1 ATCGCAAC
377288 GAAAGAATCG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.43, C:0.24, G:0.16, T:0.18
Consensus pattern (20 bp):
ATCGCAACACGAAAATGACT
Found at i:377358 original size:20 final size:20
Alignment explanation
Indices: 377331--377399 Score: 102
Period size: 20 Copynumber: 3.5 Consensus size: 20
377321 ACGATTCTCT
**
377331 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCATTTTCG
* *
377351 CATTGCGATAGTCATTTTCA
1 CGTTGCGATAGTCATTTTCG
377371 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
377391 CGTTGCGAT
1 CGTTGCGAT
377400 TTTAAGTTTC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.36
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTTCG
Found at i:377410 original size:40 final size:40
Alignment explanation
Indices: 377331--377410 Score: 97
Period size: 40 Copynumber: 2.0 Consensus size: 40
377321 ACGATTCTCT
* *
377331 CGTTGCGATAGTCAAATTCGCATTGCGATAGTCATTTTCA
1 CGTTGCGATAGTCAAATTCGCATTGCGATAGTAAGTTTCA
** * **
377371 CGTTGCGATAGTCATTTTCGCGTTGCGATTTTAAGTTTCA
1 CGTTGCGATAGTCAAATTCGCATTGCGATAGTAAGTTTCA
377411 GATTCTATTC
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.39
Consensus pattern (40 bp):
CGTTGCGATAGTCAAATTCGCATTGCGATAGTAAGTTTCA
Found at i:379912 original size:14 final size:14
Alignment explanation
Indices: 379893--379928 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
379883 ATTGTTTAAT
379893 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
379907 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
379921 TGATTTGT
1 TGATTTGT
379929 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:380065 original size:14 final size:14
Alignment explanation
Indices: 380046--380099 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 14
380036 GGAAATGACT
380046 ATCGCAACGAGAGA
1 ATCGCAACGAGAGA
*
380060 ATCGCAATGCGAAATGAAA
1 ATCGCAA--CG--A-GAGA
380079 ATCGCAACGAGAGA
1 ATCGCAACGAGAGA
380093 ATCGCAA
1 ATCGCAA
380100 TGCGAAAATG
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 17 0.52
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.30
ACGTcount: A:0.44, C:0.20, G:0.24, T:0.11
Consensus pattern (14 bp):
ATCGCAACGAGAGA
Found at i:380114 original size:34 final size:33
Alignment explanation
Indices: 380026--380121 Score: 147
Period size: 33 Copynumber: 2.8 Consensus size: 33
380016 AAAATAGACT
* **
380026 ATCGCAACGCGGAAATGACTATCGCAACGAGAGA
1 ATCGCAATGC-GAAATGAAAATCGCAACGAGAGA
380060 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
380093 ATCGCAATGCGAAAATGAAAATCGCAACG
1 ATCGCAATGCG-AAATGAAAATCGCAACG
380122 CGAAACTAAA
Statistics
Matches: 58, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
33 32 0.55
34 26 0.45
ACGTcount: A:0.43, C:0.21, G:0.24, T:0.12
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:380117 original size:20 final size:19
Alignment explanation
Indices: 380059--380126 Score: 74
Period size: 20 Copynumber: 3.8 Consensus size: 19
380049 GCAACGAGAG
380059 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
380078 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
380092 AATCGCAATGCGAAAATGAA
1 AATCGCAATGCG-AAATGAA
*
380112 AATCGCAACGCGAAA
1 AATCGCAATGCGAAA
380127 CTAAATTCGC
Statistics
Matches: 40, Mismatches: 3, Indels: 12
0.73 0.05 0.22
Matches are distributed among these distances:
14 10 0.25
15 1 0.03
16 2 0.05
17 2 0.05
19 12 0.30
20 13 0.32
ACGTcount: A:0.47, C:0.19, G:0.22, T:0.12
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:380198 original size:33 final size:33
Alignment explanation
Indices: 380136--380231 Score: 129
Period size: 33 Copynumber: 2.8 Consensus size: 33
380126 ACTAAATTCG
*
380136 CGTTGCGATTTTCATTTTCGCATTACGATTCACT
1 CGTTGCGATTTTCA-TTTCGCATTGCGATTCACT
*
380170 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCACT
** *
380203 CGTTGCGATAGTCATTTCCGCTTTGCGAT
1 CGTTGCGATTTTCATTT-CGCATTGCGAT
380232 AGTCAATTCC
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
33 32 0.57
34 24 0.43
ACGTcount: A:0.15, C:0.24, G:0.19, T:0.43
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCACT
Found at i:380230 original size:20 final size:20
Alignment explanation
Indices: 380205--380291 Score: 115
Period size: 20 Copynumber: 4.3 Consensus size: 20
380195 GATTCTCTCG
380205 TTGCGATAGTCATTTCCGCT
1 TTGCGATAGTCATTTCCGCT
*
380225 TTGCGATAGTCAATTCCGCT
1 TTGCGATAGTCATTTCCGCT
380245 TTGCGATAGTCATTTCCG-T
1 TTGCGATAGTCATTTCCGCT
* *
380264 GTTGTGATAGTCATATT-CGCG
1 -TTGCGATAGTCAT-TTCCGCT
380285 TTGCGAT
1 TTGCGAT
380292 TTTCGCGTAG
Statistics
Matches: 59, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
19 1 0.02
20 56 0.95
21 2 0.03
ACGTcount: A:0.17, C:0.21, G:0.23, T:0.39
Consensus pattern (20 bp):
TTGCGATAGTCATTTCCGCT
Found at i:380260 original size:40 final size:40
Alignment explanation
Indices: 380203--380291 Score: 128
Period size: 40 Copynumber: 2.2 Consensus size: 40
380193 GCGATTCTCT
380203 CGTTGCGATAGTCATTTCCGCT-TTGCGATAGTCA-ATTCCG
1 CGTTGCGATAGTCATTTCCG-TGTTGCGATAGTCATATT-CG
* *
380243 CTTTGCGATAGTCATTTCCGTGTTGTGATAGTCATATTCG
1 CGTTGCGATAGTCATTTCCGTGTTGCGATAGTCATATTCG
380283 CGTTGCGAT
1 CGTTGCGAT
380292 TTTCGCGTAG
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
39 1 0.02
40 40 0.91
41 3 0.07
ACGTcount: A:0.17, C:0.21, G:0.24, T:0.38
Consensus pattern (40 bp):
CGTTGCGATAGTCATTTCCGTGTTGCGATAGTCATATTCG
Found at i:382568 original size:24 final size:24
Alignment explanation
Indices: 382534--382587 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
382524 ATGAAAAATC
382534 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
382558 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
382582 ATCAAA
1 ATCAAA
382588 TTTCGAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:382601 original size:24 final size:24
Alignment explanation
Indices: 382534--382601 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
382524 ATGAAAAATC
* * *
382534 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
** *
382558 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
* *
382582 ATCAAATTTCGAATACTGAC
1 ATCAAAGTCCGAATACTGAC
382602 TAGTACTCAC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.24
Consensus pattern (24 bp):
ATCAAAGTCCGAATACTGACCAAG
Found at i:383453 original size:20 final size:20
Alignment explanation
Indices: 383428--383474 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
383418 AAATTCAGTA
* *
383428 TTGCGATAGTCATAATCTCG
1 TTGCGATAGTCAGAATCGCG
*
383448 TTGCGATAGTCAGATTCGCG
1 TTGCGATAGTCAGAATCGCG
383468 TTGCGAT
1 TTGCGAT
383475 TTTCGTATTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.34
Consensus pattern (20 bp):
TTGCGATAGTCAGAATCGCG
Found at i:383484 original size:20 final size:20
Alignment explanation
Indices: 383461--383553 Score: 159
Period size: 20 Copynumber: 4.7 Consensus size: 20
383451 CGATAGTCAG
*
383461 ATTCGCGTTGCGATTTTCGT
1 ATTCGCATTGCGATTTTCGT
383481 ATTCGCATTGCGATTTTCGT
1 ATTCGCATTGCGATTTTCGT
383501 ATTCGCATTGCGATTTTCGT
1 ATTCGCATTGCGATTTTCGT
*
383521 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTTCGT
*
383541 AATCGCATTGCGA
1 ATTCGCATTGCGA
383554 ATCTGGAAAC
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 70 1.00
ACGTcount: A:0.17, C:0.20, G:0.22, T:0.41
Consensus pattern (20 bp):
ATTCGCATTGCGATTTTCGT
Found at i:383492 original size:40 final size:40
Alignment explanation
Indices: 383448--383553 Score: 135
Period size: 40 Copynumber: 2.6 Consensus size: 40
383438 CATAATCTCG
*
383448 TTGCGATAGTCAG-ATTCGCGTTGCGATTTTCGTATTCGCA
1 TTGCGATAGTC-GTATTCGCATTGCGATTTTCGTATTCGCA
**
383488 TTGCGATTTTCGTATTCGCATTGCGATTTTCGTATTCGCA
1 TTGCGATAGTCGTATTCGCATTGCGATTTTCGTATTCGCA
* *
383528 TTGCGAT-TTACGTAATCGCATTGCGA
1 TTGCGATAGT-CGTATTCGCATTGCGA
383554 ATCTGGAAAC
Statistics
Matches: 60, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
39 3 0.05
40 57 0.95
ACGTcount: A:0.18, C:0.20, G:0.23, T:0.40
Consensus pattern (40 bp):
TTGCGATAGTCGTATTCGCATTGCGATTTTCGTATTCGCA
Found at i:400046 original size:20 final size:20
Alignment explanation
Indices: 400023--400069 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 20
400013 ATGCTTGAAT
*
400023 AAAAAATGAAATAAAG-AGAA
1 AAAAAAT-AAAAAAAGAAGAA
400043 AAAAAATAAAAAAAGAAGAA
1 AAAAAATAAAAAAAGAAGAA
400063 AATAAAA
1 AA-AAAA
400070 AAAGAGGGTC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 7 0.29
20 13 0.54
21 4 0.17
ACGTcount: A:0.81, C:0.00, G:0.11, T:0.09
Consensus pattern (20 bp):
AAAAAATAAAAAAAGAAGAA
Found at i:400047 original size:19 final size:18
Alignment explanation
Indices: 400023--400071 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 18
400013 ATGCTTGAAT
400023 AAAAAATGAAATAAAGAGAA
1 AAAAAAT-AAA-AAAGAGAA
400043 AAAAAATAAAAAA-AG-A
1 AAAAAATAAAAAAGAGAA
*
400059 AGAAAATAAAAAA
1 AAAAAATAAAAAA
400072 AGAGGGTCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 13 0.46
17 2 0.07
18 3 0.11
19 3 0.11
20 7 0.25
ACGTcount: A:0.82, C:0.00, G:0.10, T:0.08
Consensus pattern (18 bp):
AAAAAATAAAAAAGAGAA
Found at i:400451 original size:19 final size:19
Alignment explanation
Indices: 400403--400480 Score: 79
Period size: 18 Copynumber: 3.9 Consensus size: 19
400393 ATTTATTAAT
400403 AAATTCTAAGTTTATTTTCTCT-
1 AAATTC-AA-TTTATTTT-T-TG
400425 AAATTCAATTTATTTTTTG
1 AAATTCAATTTATTTTTTG
* *
400444 AGATTCAATTTA-TTTTCG
1 AAATTCAATTTATTTTTTG
400462 AAATTCAATTTATTATTTT
1 AAATTCAATTTATT-TTTT
400481 ATTTTGTAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
18 17 0.35
19 13 0.27
20 11 0.22
21 2 0.04
22 6 0.12
ACGTcount: A:0.31, C:0.09, G:0.05, T:0.55
Consensus pattern (19 bp):
AAATTCAATTTATTTTTTG
Found at i:401801 original size:113 final size:113
Alignment explanation
Indices: 401589--401894 Score: 501
Period size: 113 Copynumber: 2.7 Consensus size: 113
401579 TAGCAAAGAT
* * *
401589 TCAAATCCATCAC--AATGGATCAACATTTCCAGA-AAGAGTTCATAATGAGAAGAACTCGTCTG
1 TCAAATCCATCACTTGATGGATCAACTTTTCCAGAGAA-AGTTCATAATGAGAAGAACTCATCTG
* * *
401651 AAGAATGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTTAATCTTTTGC
65 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGC
*
401700 TCAAATCCATCACTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
1 TCAAATCCATCACTTGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
401765 AGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGC
66 AGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGC
*
401813 TCAAATCCATCACTTGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCAACTGA
1 TCAAATCCATCACTTGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
*
401878 AGAAGGAAGAATAAGTT
66 AGAAGGAAGAAGAAGTT
401895 AATTTTAATC
Statistics
Matches: 182, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
111 13 0.07
113 167 0.92
114 2 0.01
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (113 bp):
TCAAATCCATCACTTGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
AGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGC
Found at i:403306 original size:11 final size:11
Alignment explanation
Indices: 403278--403307 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
403268 TTTTATGGCT
*
403278 AGAGACAGGAG
1 AGAGACGGGAG
403289 AGAGACGGGAG
1 AGAGACGGGAG
403300 AGAGACGG
1 AGAGACGG
403308 CCAAGCGTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.40, C:0.10, G:0.50, T:0.00
Consensus pattern (11 bp):
AGAGACGGGAG
Found at i:405083 original size:18 final size:18
Alignment explanation
Indices: 405060--405097 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
405050 CCATAAACAA
*
405060 AATAAA-TGAAATTAAATG
1 AATAAAGTG-AATAAAATG
405078 AATAAAGTGAATAAAATG
1 AATAAAGTGAATAAAATG
405096 AA
1 AA
405098 AAGAAATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 16 0.89
19 2 0.11
ACGTcount: A:0.63, C:0.00, G:0.13, T:0.24
Consensus pattern (18 bp):
AATAAAGTGAATAAAATG
Found at i:405245 original size:33 final size:31
Alignment explanation
Indices: 405202--405269 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 31
405192 ACTATATACC
405202 ATATAGTTTTCAAAAATGA-TTTTAAAAATATT
1 ATATAGTTTTCAAAAAT-ATTTTTAAAAATA-T
* *
405234 ATATGAGTTTTCCAAAATATTTTTAAAACTAT
1 ATAT-AGTTTTCAAAAATATTTTTAAAAATAT
405266 ATAT
1 ATAT
405270 TATATAAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
32 10 0.31
33 22 0.69
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (31 bp):
ATATAGTTTTCAAAAATATTTTTAAAAATAT
Found at i:405359 original size:35 final size:36
Alignment explanation
Indices: 405315--405398 Score: 100
Period size: 35 Copynumber: 2.3 Consensus size: 36
405305 TATACATTAT
405315 ATTTTCAAAATGATTTCAAAA-ATATA-TGTTATATA
1 ATTTTCAAAATGATTTCAAAATATATATTG-TATATA
* *
405350 ATTTTCAAAATGTTTTTAAAACTTATATATTGTATATA
1 ATTTTCAAAATGATTTCAAAA--TATATATTGTATATA
405388 AGTTTTCAAAA
1 A-TTTTCAAAA
405399 ACGTTTTTAA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
35 19 0.45
38 12 0.29
39 11 0.26
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.45
Consensus pattern (36 bp):
ATTTTCAAAATGATTTCAAAATATATATTGTATATA
Found at i:405409 original size:40 final size:38
Alignment explanation
Indices: 405336--405410 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 38
405326 GATTTCAAAA
*
405336 ATATATGTTATATAATTTTCAAAATGTTTTTAAAACTT
1 ATATATGTTATATAATTTTCAAAACGTTTTTAAAACTT
405374 ATATAT-TGTATATAAGTTTTCAAAAACGTTTTTAAAA
1 ATATATGT-TATATAA-TTTTC-AAAACGTTTTTAAAA
405411 AAAACTATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
37 1 0.03
38 13 0.39
39 5 0.15
40 14 0.42
ACGTcount: A:0.41, C:0.05, G:0.07, T:0.47
Consensus pattern (38 bp):
ATATATGTTATATAATTTTCAAAACGTTTTTAAAACTT
Done.