Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004921.1 Hibiscus syriacus cultivar Beakdansim tig00011081_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105985
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.33
Found at i:4304 original size:7 final size:7
Alignment explanation
Indices: 4292--4322 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
4282 AACACAACTC
4292 CAATATA
1 CAATATA
4299 CAATATA
1 CAATATA
4306 CAATATA
1 CAATATA
*
4313 CAATAAA
1 CAATATA
4320 CAA
1 CAA
4323 AAAAACTGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.61, C:0.16, G:0.00, T:0.23
Consensus pattern (7 bp):
CAATATA
Found at i:13412 original size:19 final size:19
Alignment explanation
Indices: 13385--13423 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
13375 TCAGTTTCTG
*
13385 AATATTAAGTTAAAAATAA
1 AATAGTAAGTTAAAAATAA
*
13404 AATAGTAAGTTGAAAATAA
1 AATAGTAAGTTAAAAATAA
13423 A
1 A
13424 TGTTAACTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.28
Consensus pattern (19 bp):
AATAGTAAGTTAAAAATAA
Found at i:19126 original size:5 final size:5
Alignment explanation
Indices: 19116--19153 Score: 58
Period size: 5 Copynumber: 7.6 Consensus size: 5
19106 TCATCTAACA
* *
19116 GGATT GGATT GGATT TGATT GGATT GGATT GGACT GGA
1 GGATT GGATT GGATT GGATT GGATT GGATT GGATT GGA
19154 CTGGTCTGGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.21, C:0.03, G:0.39, T:0.37
Consensus pattern (5 bp):
GGATT
Found at i:21216 original size:13 final size:14
Alignment explanation
Indices: 21193--21222 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
21183 TTCCCATTAC
21193 AGACGTGCATATGA
1 AGACGTGCATATGA
21207 AGAC-TGCATATGA
1 AGACGTGCATATGA
21220 AGA
1 AGA
21223 TTGTCCAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.40, C:0.13, G:0.27, T:0.20
Consensus pattern (14 bp):
AGACGTGCATATGA
Found at i:24061 original size:22 final size:21
Alignment explanation
Indices: 24035--24078 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
24025 TTTGTAAATA
*
24035 TAAAACAAAATATTAAGTTATT
1 TAAAA-AAAAGATTAAGTTATT
*
24057 TAAAAAAAAGGTTAAGTTATT
1 TAAAAAAAAGATTAAGTTATT
24078 T
1 T
24079 GTAAAAGTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.52, C:0.02, G:0.09, T:0.36
Consensus pattern (21 bp):
TAAAAAAAAGATTAAGTTATT
Found at i:35716 original size:12 final size:13
Alignment explanation
Indices: 35692--35717 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
35682 CACTGTTATT
35692 AAATTTAAAAAAA
1 AAATTTAAAAAAA
35705 AAATTTAAAAAAA
1 AAATTTAAAAAAA
35718 CTAAATTCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (13 bp):
AAATTTAAAAAAA
Found at i:42992 original size:21 final size:21
Alignment explanation
Indices: 42958--42997 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
42948 AAAGGTAACA
* *
42958 TAAACATGTAAAAACTTCAGC
1 TAAACATATAAAAAATTCAGC
*
42979 TAAACATATGAAAAATTCA
1 TAAACATATAAAAAATTCA
42998 AATGTCACAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.53, C:0.15, G:0.07, T:0.25
Consensus pattern (21 bp):
TAAACATATAAAAAATTCAGC
Found at i:45597 original size:22 final size:22
Alignment explanation
Indices: 45569--45610 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
45559 TCCCTCTTAG
45569 TTGGGTACCTACAATTTCCTAA
1 TTGGGTACCTACAATTTCCTAA
45591 TTGGGTACCTACAATTTCCT
1 TTGGGTACCTACAATTTCCT
45611 TAATGGAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (22 bp):
TTGGGTACCTACAATTTCCTAA
Found at i:50842 original size:6 final size:6
Alignment explanation
Indices: 50831--51677 Score: 1598
Period size: 6 Copynumber: 141.5 Consensus size: 6
50821 TAATGTAAGG
*
50831 TATACA TATAC- -ATACA TATATA TATACA TATACA TATACA TATACA
1 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
50877 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
1 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
50925 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
1 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
50973 TATACA TATACATA TATACA TATACA TATACA TATACA TATACA TATACA
1 TATACA TATAC--A TATACA TATACA TATACA TATACA TATACA TATACA
51023 TATAC- -ATACA TATACA TATACA TATACA TATACA TATACA TATACA
1 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
51069 TATACA TATAC- -ATACA TATACA TATACA TATACA TATACA TATACA
1 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
51115 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
1 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
51163 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
1 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
51211 TATACA TACATACA TATACA TATACA TATACA TATACA TATACA TATACA
1 TATACA T--ATACA TATACA TATACA TATACA TATACA TATACA TATACA
51261 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
1 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
51309 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
1 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
51357 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
1 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
51405 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
1 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
51453 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
1 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
51501 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
1 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
51549 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
1 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
51597 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
1 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
*
51645 TATACA TATACA TATACA TATATA TATACA TAT
1 TATACA TATACA TATACA TATACA TATACA TAT
51678 CACACATCGT
Statistics
Matches: 827, Mismatches: 4, Indels: 20
0.97 0.00 0.02
Matches are distributed among these distances:
4 12 0.01
6 803 0.97
8 12 0.01
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.34
Consensus pattern (6 bp):
TATACA
Found at i:51979 original size:18 final size:18
Alignment explanation
Indices: 51956--51990 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
51946 CATATGAATT
*
51956 TGTCCCGAATGACCACTA
1 TGTCCCGAAGGACCACTA
51974 TGTCCCGAAGGACCACT
1 TGTCCCGAAGGACCACT
51991 GATAATCCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.34, G:0.20, T:0.20
Consensus pattern (18 bp):
TGTCCCGAAGGACCACTA
Found at i:54807 original size:23 final size:23
Alignment explanation
Indices: 54781--54838 Score: 116
Period size: 23 Copynumber: 2.5 Consensus size: 23
54771 CTCGTATAAA
54781 TGCACCGAAGTGCCACGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
54804 TGCACCGAAGTGCCACGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
54827 TGCACCGAAGTG
1 TGCACCGAAGTG
54839 ACATATAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.29, C:0.26, G:0.28, T:0.17
Consensus pattern (23 bp):
TGCACCGAAGTGCCACGTAGAAT
Found at i:60024 original size:31 final size:31
Alignment explanation
Indices: 59986--60110 Score: 225
Period size: 31 Copynumber: 4.0 Consensus size: 31
59976 CCTGAAGGAC
*
59986 CAGTCCATA-GATCCCGAAGAACCTAGGTAAA
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
60017 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
60048 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
60079 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
60110 C
1 C
60111 CCTCGACCCT
Statistics
Matches: 92, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
31 91 0.99
32 1 0.01
ACGTcount: A:0.38, C:0.24, G:0.19, T:0.18
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:60900 original size:64 final size:64
Alignment explanation
Indices: 60762--60923 Score: 184
Period size: 64 Copynumber: 2.5 Consensus size: 64
60752 TCTTTCAATG
* * *
60762 AAAGTATGCATCGATGCACTACTGATGCATCGGTGCATAAAATGCATTCGATGTTGTATTATTA
1 AAAGTATGCATCGATGCACTACTAATGCATCGATGCATAAAATGAATTCGATGTTGTATTATTA
*** * * * * *
60826 CTGGTATGCATCGATGCACTACTTATGCATCGATGCATGAATTGAATTCGATATTTTTATT-TTA
1 AAAGTATGCATCGATGCACTACTAATGCATCGATGCATAAAATGAATTCGAT-GTTGTATTATTA
*
60890 AAAG-AGTGCATCGATGCACTACCAATGCATCGAT
1 AAAGTA-TGCATCGATGCACTACTAATGCATCGAT
60924 ACACCTTCAA
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
63 1 0.01
64 74 0.91
65 6 0.07
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.33
Consensus pattern (64 bp):
AAAGTATGCATCGATGCACTACTAATGCATCGATGCATAAAATGAATTCGATGTTGTATTATTA
Found at i:61469 original size:3 final size:3
Alignment explanation
Indices: 61461--61489 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
61451 TCTCGTACAT
61461 GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
61490 TGATGATGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:67822 original size:23 final size:23
Alignment explanation
Indices: 67796--67886 Score: 137
Period size: 23 Copynumber: 4.0 Consensus size: 23
67786 CACCACAGCT
*
67796 CGTATAAATGCACCGAAGTGCCG
1 CGTAGAAATGCACCGAAGTGCCG
* *
67819 CGTAGAAATGCACCGTAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCG
*
67842 CGTAGAATTGCACCGAAGTGCCG
1 CGTAGAAATGCACCGAAGTGCCG
*
67865 CGTAGAAATGCACCGTAGTGCC
1 CGTAGAAATGCACCGAAGTGCC
67887 ATATAATGTC
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 60 1.00
ACGTcount: A:0.29, C:0.26, G:0.27, T:0.18
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCG
Found at i:70789 original size:23 final size:23
Alignment explanation
Indices: 70757--70817 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 23
70747 CTCGTATAAA
70757 TACACCGAAGTGCCACAAAGAAT
1 TACACCGAAGTGCCACAAAGAAT
* * **
70780 TGCACCGAAGTGCCGCGTAGAAT
1 TACACCGAAGTGCCACAAAGAAT
70803 TACACCGAAGTGCCA
1 TACACCGAAGTGCCA
70818 TATAAAATGT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.34, C:0.28, G:0.23, T:0.15
Consensus pattern (23 bp):
TACACCGAAGTGCCACAAAGAAT
Found at i:73340 original size:20 final size:22
Alignment explanation
Indices: 73315--73372 Score: 84
Period size: 20 Copynumber: 2.6 Consensus size: 22
73305 TTCCCATTGA
73315 AGTGCATCGATGCATTC-T-AC
1 AGTGCATCGATGCATTCTTAAC
73335 AGTGCATCGATGCATTCTTTAAC
1 AGTGCATCGATGCATTC-TTAAC
73358 ATGTGCATCGATGCA
1 A-GTGCATCGATGCA
73373 CTACCCATGC
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 17 0.50
22 1 0.03
23 3 0.09
24 13 0.38
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (22 bp):
AGTGCATCGATGCATTCTTAAC
Found at i:73433 original size:64 final size:63
Alignment explanation
Indices: 73361--73521 Score: 205
Period size: 64 Copynumber: 2.5 Consensus size: 63
73351 CTTTAACATG
* * *
73361 TGCATCGATGCACTACCCATGCATCGATACACAAATTACCTTCGATGTTTTCATCTTAAAGGGA
1 TGCATCGATGCACT-CCTATGCATCGATACACAAATTACATTCGATGTTTCCATCTTAAAGGGA
* * * * * *
73425 TGCATCGATGCACTCCTTATGCATCGATGCACCAATTGCATTCGATGTTTCCATTTTTAAGGGT
1 TGCATCGATGCACTCC-TATGCATCGATACACAAATTACATTCGATGTTTCCATCTTAAAGGGA
*
73489 TGCATCGATGCACTTCCTGTGCATCGATACACA
1 TGCATCGATGCAC-TCCTATGCATCGATACACA
73522 CTGAACAATT
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
63 2 0.02
64 78 0.94
65 3 0.04
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.32
Consensus pattern (63 bp):
TGCATCGATGCACTCCTATGCATCGATACACAAATTACATTCGATGTTTCCATCTTAAAGGGA
Found at i:74904 original size:21 final size:21
Alignment explanation
Indices: 74878--74958 Score: 117
Period size: 21 Copynumber: 3.9 Consensus size: 21
74868 CGAGGGTTAT
74878 AGTGGTCATTCGGGACAATAC
1 AGTGGTCATTCGGGACAATAC
* * *
74899 AGTGGTCATTTGAGATAATAC
1 AGTGGTCATTCGGGACAATAC
74920 AGTGGTCATTCGGGACAATAC
1 AGTGGTCATTCGGGACAATAC
* *
74941 AATGGTCCTTCGGGACAA
1 AGTGGTCATTCGGGACAA
74959 ATTTCATATG
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 52 1.00
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (21 bp):
AGTGGTCATTCGGGACAATAC
Found at i:76569 original size:21 final size:20
Alignment explanation
Indices: 76502--76569 Score: 52
Period size: 21 Copynumber: 3.3 Consensus size: 20
76492 ATTACAAAAT
76502 AATTATTAAAACTTATCA--A
1 AATTATTAAAA-TTATCATTA
*
76521 ACTATTA-TAAAATTATCTTTA
1 A--ATTATTAAAATTATCATTA
76542 AATTTATTAAAATTTATCATTA
1 AA-TTATTAAAA-TTATCATTA
*
76564 GATTAT
1 AATTAT
76570 GACATATAAG
Statistics
Matches: 39, Mismatches: 3, Indels: 12
0.72 0.06 0.22
Matches are distributed among these distances:
19 7 0.18
20 8 0.21
21 15 0.38
22 9 0.23
ACGTcount: A:0.46, C:0.07, G:0.01, T:0.46
Consensus pattern (20 bp):
AATTATTAAAATTATCATTA
Found at i:81922 original size:10 final size:10
Alignment explanation
Indices: 81903--81940 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
81893 ATCACACCAT
81903 ATTCTCTCAA
1 ATTCTCTCAA
*
81913 ATTTTCTCAA
1 ATTCTCTCAA
81923 ATTCTCTCAA
1 ATTCTCTCAA
*
81933 ATACTCTC
1 ATTCTCTC
81941 TCTATTTAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.42
Consensus pattern (10 bp):
ATTCTCTCAA
Found at i:82018 original size:17 final size:18
Alignment explanation
Indices: 81982--82022 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
81972 ATATTATGTA
*
81982 TTTAATTTATTTAAGCAT
1 TTTACTTTATTTAAGCAT
*
82000 TTTACTTTATTTAA-TAT
1 TTTACTTTATTTAAGCAT
82017 TTTACT
1 TTTACT
82023 AATATAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.61
Consensus pattern (18 bp):
TTTACTTTATTTAAGCAT
Found at i:86376 original size:13 final size:12
Alignment explanation
Indices: 86343--86376 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
86333 AATAAGTATA
*
86343 ATAAAAAAATTT
1 ATAACAAAATTT
86355 ATAACAAAATTT
1 ATAACAAAATTT
86367 ATAACGAAAA
1 ATAAC-AAAA
86377 ATCACACGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 16 0.80
13 4 0.20
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (12 bp):
ATAACAAAATTT
Found at i:91854 original size:16 final size:16
Alignment explanation
Indices: 91833--91863 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
91823 AATGCATCAC
91833 TCAGACTTGCAGGGAA
1 TCAGACTTGCAGGGAA
91849 TCAGACTTGCAGGGA
1 TCAGACTTGCAGGGA
91864 GATTAGTTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.29, C:0.19, G:0.32, T:0.19
Consensus pattern (16 bp):
TCAGACTTGCAGGGAA
Found at i:94539 original size:19 final size:19
Alignment explanation
Indices: 94515--94551 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
94505 GCATTGATGA
94515 GTGGTGAAAAGAATCATTG
1 GTGGTGAAAAGAATCATTG
*
94534 GTGGTGAAGAGAATCATT
1 GTGGTGAAAAGAATCATT
94552 AACTCCGATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.35, C:0.05, G:0.32, T:0.27
Consensus pattern (19 bp):
GTGGTGAAAAGAATCATTG
Found at i:103062 original size:70 final size:71
Alignment explanation
Indices: 102980--103119 Score: 273
Period size: 71 Copynumber: 2.0 Consensus size: 71
102970 AATAAAACGG
102980 ATGCATCTTAGAAGCCAATTCAAAGGCAACAGC-TTATTAACTATACACAGTATCACATCAAATA
1 ATGCATCTTAGAAGCCAATTCAAAGGCAACAGCTTTATTAACTATACACAGTATCACATCAAATA
103044 TAAGCC
66 TAAGCC
103050 ATGCATCTTAGAAGCCAATTCAAAGGCAACAGCTTTATTAACTATACACAGTATCACATCAAATA
1 ATGCATCTTAGAAGCCAATTCAAAGGCAACAGCTTTATTAACTATACACAGTATCACATCAAATA
103115 TAAGC
66 TAAGC
103120 ATCCACGCCT
Statistics
Matches: 69, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 33 0.48
71 36 0.52
ACGTcount: A:0.41, C:0.22, G:0.11, T:0.25
Consensus pattern (71 bp):
ATGCATCTTAGAAGCCAATTCAAAGGCAACAGCTTTATTAACTATACACAGTATCACATCAAATA
TAAGCC
Done.