Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004923.1 Hibiscus syriacus cultivar Beakdansim tig00011084_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49962

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64--196
62
2.1
62
93
2
223
50
6
12
31
1.63
92--195
29
3.2
33
65
20
85
53
4
11
29
1.57
300--434
20
6.8
20
71
14
91
27
28
18
25
1.98
300--473
80
2.2
80
91
2
287
29
26
18
25
1.98
301--446
40
3.7
40
74
7
152
27
28
18
26
1.98
502--616
41
2.8
41
79
11
137
42
22
15
19
1.88
502--661
21
7.8
21
75
12
127
41
21
15
21
1.90
523--661
62
2.2
62
92
0
224
40
23
15
20
1.91
1080--1170
19
4.4
20
75
17
96
31
27
4
36
1.77
1091--1172
44
1.9
41
85
7
110
34
28
4
32
1.78
1511--1561
25
2.0
25
85
7
68
45
0
0
54
0.99
2105--2140
4
9.0
4
100
0
72
25
0
0
75
0.81
7846--7911
1
66.0
1
72
0
51
86
1
9
3
0.74
7846--7913
7
9.9
7
78
15
61
85
1
10
2
0.77
7845--7911
11
5.6
11
75
15
62
85
1
10
2
0.78
7846--7911
18
3.6
17
86
11
87
86
1
9
3
0.74
7846--7913
25
2.8
25
82
8
88
85
1
10
2
0.77
7846--7913
15
4.9
14
74
15
61
85
1
10
2
0.77
8362--9371
502
2.0
502
99
0
1984
37
15
17
30
1.90
9925--10042
49
2.3
50
81
5
123
35
15
23
25
1.94
9946--10045
52
2.0
50
84
5
130
37
17
24
22
1.94
11237--11430
100
1.9
99
91
1
316
31
13
20
34
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11437--11511
20
3.8
20
81
0
87
29
20
18
32
1.96
11333--11609
139
2.0
139
89
0
428
32
15
18
33
1.92
11457--12346
119
7.5
119
93
2
1483
32
16
18
32
1.93
11695--11749
20
2.8
20
82
0
65
27
21
20
30
1.98
11808--11862
20
2.8
20
80
0
74
30
21
20
27
1.98
11457--12346
351
2.5
354
94
1
1520
32
16
18
32
1.93
11927--11981
20
2.8
20
80
0
74
30
21
20
27
1.98
12046--12100
20
2.8
20
77
0
56
29
20
21
29
1.98
12165--12219
20
2.8
20
80
0
74
30
21
20
27
1.98
12284--12331
19
2.5
19
82
3
60
31
27
12
29
1.93
12480--12552
3
24.7
3
86
8
96
35
4
0
60
1.16
14011--14170
62
2.6
62
96
0
293
51
8
8
30
1.63
15703--15760
29
2.0
29
86
6
82
31
0
12
56
1.35
21733--22036
149
2.0
149
99
0
599
38
13
7
40
1.73
24343--24382
21
1.9
21
89
0
62
10
25
40
25
1.86
24363--24425
20
2.9
21
79
9
65
15
25
34
23
1.95
28231--28270
21
1.9
21
85
10
55
35
10
2
52
1.48
35709--35777
23
3.0
23
82
0
75
30
21
26
21
1.99
48636--48700
15
4.3
15
96
3
114
46
6
40
7
1.58

Tables:   1

The End!