genome.fa.s4924.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004924.1 Hibiscus syriacus cultivar Beakdansim tig00011085_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91433

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
883--920	19	2.0	20	85	15	53	26	0	15	57	1.38
3246--3335	27	3.3	27	100	0	180	40	16	15	27	1.89
7322--7362	21	2.0	21	85	0	55	58	0	9	31	1.31
7145--8262	557	2.0	559	89	3	1696	45	9	14	29	1.77
14932--14971	18	2.2	18	95	0	71	27	32	17	22	1.96
14998--15470	81	6.0	81	86	6	673	30	20	13	36	1.90
15322--15463	71	2.0	71	90	2	223	35	19	12	32	1.90
19842--20160	132	2.4	132	94	1	561	27	23	14	34	1.93
20090--20654	81	7.0	81	90	0	887	31	20	11	36	1.88
22080--22225	64	2.3	64	85	5	188	32	21	17	29	1.96
24324--24366	22	1.9	23	86	13	63	46	2	0	51	1.13
24474--24627	51	3.1	50	80	5	177	33	1	11	53	1.47
24455--24627	48	3.5	50	79	10	178	34	1	10	53	1.45
25146--25208	34	1.9	32	90	6	99	12	4	20	61	1.49
25245--25292	24	2.0	24	83	0	60	29	8	16	45	1.76
25278--25401	34	3.6	34	84	0	149	22	16	19	41	1.89
25272--25401	68	1.9	68	87	0	188	22	16	19	41	1.90
26049--26094	20	2.3	20	88	7	67	58	6	2	32	1.36
27585--27621	15	2.5	15	95	0	65	8	70	16	5	1.30
32771--32840	23	3.1	23	85	2	97	21	18	25	34	1.96
35059--35087	15	1.9	15	100	0	58	55	10	13	20	1.68
37157--37220	28	2.3	28	91	0	101	20	9	23	46	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43134--43177	20	2.2	20	80	4	54	45	4	2	47	1.35
50223--50419	28	7.0	28	87	1	268	43	13	2	40	1.58
50223--50419	85	2.3	84	87	1	268	43	13	2	40	1.58
50366--50415	16	3.4	16	68	21	54	42	14	4	40	1.64
50411--50476	29	2.3	29	81	2	89	42	15	4	37	1.67
53601--53664	31	2.1	31	82	5	76	34	25	23	17	1.96
54571--54782	28	7.6	28	86	4	286	43	11	3	41	1.58
54562--54782	57	3.9	57	87	5	281	43	11	3	41	1.58
89034--89063	15	1.9	16	93	6	53	26	0	10	63	1.26
90162--90197	17	2.1	17	90	10	56	41	0	5	52	1.24
90757--90848	42	2.2	42	82	3	114	26	33	17	22	1.96
90865--90907	21	2.0	21	90	0	68	25	37	18	18	1.94

Tables:   1

The End!