genome.fa.s4925.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004925.1 Hibiscus syriacus cultivar Beakdansim tig00011088_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69560

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6793--6897	46	2.3	45	83	8	124	34	19	18	28	1.95
6838--6963	64	2.0	65	90	1	200	33	23	15	27	1.95
9137--9179	20	2.2	20	86	0	59	16	39	25	18	1.91
9528--9618	34	2.7	34	96	0	164	27	18	28	25	1.98
16126--16287	65	2.5	65	89	1	236	30	22	16	29	1.96
16126--16305	64	2.8	64	85	4	227	30	23	17	29	1.97
18126--18163	19	2.0	20	94	5	69	28	15	28	26	1.96
18131--18289	63	2.5	62	86	4	203	32	19	22	26	1.97
19605--19640	18	2.0	18	100	0	72	11	22	33	33	1.89
19576--19763	62	3.1	62	62	26	146	24	14	25	35	1.94
19520--19828	59	5.1	59	61	26	146	25	15	23	35	1.94
19504--19867	121	3.0	121	97	0	687	24	15	25	35	1.94
19726--19761	18	2.0	18	94	0	63	11	19	33	36	1.87
19872--19932	23	2.7	23	84	5	88	19	22	27	29	1.98
23748--23785	19	2.0	20	89	5	60	28	15	26	28	1.96
23753--23911	63	2.5	62	83	6	178	32	18	21	27	1.97
25207--25242	18	2.0	18	100	0	72	11	22	33	33	1.89
25104--25469	121	3.0	121	98	0	705	24	15	25	35	1.94
25328--25363	18	2.0	18	94	0	63	11	19	33	36	1.87
25179--25365	62	3.1	62	61	26	144	24	14	25	35	1.93
25474--25534	23	2.7	23	94	0	104	19	24	27	27	1.99
25761--25785	4	6.2	4	100	0	50	24	0	24	52	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27253--27329	3	25.0	3	84	5	91	29	0	5	64	1.15
41772--42039	141	1.9	141	85	3	369	27	29	18	24	1.98
42284--42360	3	25.0	3	84	5	91	29	0	5	64	1.15
43955--43986	2	16.0	2	93	0	55	46	0	0	53	1.00
57883--57959	29	2.7	29	85	0	109	42	24	6	25	1.78
65020--65170	29	5.5	28	76	9	107	48	13	1	35	1.55
65095--65175	28	2.9	27	85	8	101	45	17	4	32	1.69

Tables:   1

The End!