Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004928.1 Hibiscus syriacus cultivar Beakdansim tig00011092_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 80278
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Found at i:1333 original size:11 final size:11
Alignment explanation
Indices: 1317--1346 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
1307 TCTTTCTTCT
1317 ATTTTTTTAAA
1 ATTTTTTTAAA
1328 A-TTTTTTAAA
1 ATTTTTTTAAA
1338 ATTTTTTTA
1 ATTTTTTTA
1347 CTAACCGGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (11 bp):
ATTTTTTTAAA
Found at i:3446 original size:3 final size:3
Alignment explanation
Indices: 3427--3484 Score: 98
Period size: 3 Copynumber: 19.0 Consensus size: 3
3417 ACATATAACG
*
3427 GAA GAAA GAA AAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA G-AA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
3473 GAA GAA GAA GAA
1 GAA GAA GAA GAA
3485 TTTGAAAACA
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
3 49 0.94
4 3 0.06
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:4835 original size:15 final size:15
Alignment explanation
Indices: 4812--4861 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
4802 ATCGAGTTGG
*
4812 TTTTGGTTTGGGTTA
1 TTTTTGTTTGGGTTA
4827 TTTTTGTTTGGGTTA
1 TTTTTGTTTGGGTTA
* *
4842 TTTTTAGTTCGGGTTG
1 TTTTT-GTTTGGGTTA
4858 TTTT
1 TTTT
4862 CGATTCAGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
15 19 0.61
16 12 0.39
ACGTcount: A:0.06, C:0.02, G:0.28, T:0.64
Consensus pattern (15 bp):
TTTTTGTTTGGGTTA
Found at i:4846 original size:16 final size:16
Alignment explanation
Indices: 4812--4861 Score: 66
Period size: 16 Copynumber: 3.2 Consensus size: 16
4802 ATCGAGTTGG
*
4812 TTTTGGTTTGGGTTAT
1 TTTTAGTTTGGGTTAT
4828 TTTT-GTTTGGGTTAT
1 TTTTAGTTTGGGTTAT
* *
4843 TTTTAGTTCGGGTTGT
1 TTTTAGTTTGGGTTAT
4859 TTT
1 TTT
4862 CGATTCAGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
15 15 0.48
16 16 0.52
ACGTcount: A:0.06, C:0.02, G:0.28, T:0.64
Consensus pattern (16 bp):
TTTTAGTTTGGGTTAT
Found at i:7149 original size:3 final size:3
Alignment explanation
Indices: 7141--7169 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
7131 TTATTTATTG
7141 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
7170 TATGATGATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:7510 original size:80 final size:79
Alignment explanation
Indices: 7315--7565 Score: 351
Period size: 80 Copynumber: 3.2 Consensus size: 79
7305 ATGGAAATAT
* * *
7315 TGATCCAATTCCTTTTGTGATGGAACCGAGCAAAGGTTGAACAAGTTCTTCTCATTATGAACTTC
1 TGATCCAACTCCTTTTGTGATGGAATCGAGCAAAGGTTGAACAAGTTCATCTCATTATGAACTTC
* *
7380 TTCTATGAAAATGC
66 TTCTTTGAGAATGC
* * *
7394 TAACCCAACTCCTTTTGTGATGGAATCGAGCAAAGGTTTAACAAGTTCATCTCATTATGAACTTC
1 TGATCCAACTCCTTTTGTGATGGAATCGAGCAAAGGTTGAACAAGTTCATCTCATTATGAACTTC
*
7459 TTCTCTTGGGAATGC
66 TTCT-TTGAGAATGC
* *
7474 TGATCCAACTCCTTCTGTGATGGAATCGAGCAAAGGTTGAACAAGTT-ATTATCATTATGAACTT
1 TGATCCAACTCCTTTTGTGATGGAATCGAGCAAAGGTTGAACAAGTTCA-TCTCATTATGAACTT
* *
7538 CTTTTATTGAGAATGT
65 CTTCT-TTGAGAATGC
7554 TGATCCAACTCC
1 TGATCCAACTCC
7566 AATAAGTTCT
Statistics
Matches: 152, Mismatches: 18, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
79 64 0.42
80 88 0.58
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.34
Consensus pattern (79 bp):
TGATCCAACTCCTTTTGTGATGGAATCGAGCAAAGGTTGAACAAGTTCATCTCATTATGAACTTC
TTCTTTGAGAATGC
Found at i:7989 original size:26 final size:25
Alignment explanation
Indices: 7957--8032 Score: 82
Period size: 25 Copynumber: 3.0 Consensus size: 25
7947 AAGATAAAGA
*
7957 TAAAAGAGATTTAATTCCTCTTTTAT
1 TAAAAGAAATTT-ATTCCTCTTTTAT
*
7983 TAAAAGATATTGT-TTCCTCTTTTAT
1 TAAAAGAAATT-TATTCCTCTTTTAT
* *
8008 TAGAAGAAATTTATTATCTCTTTTA
1 TAAAAGAAATTTATT-CCTCTTTTA
8033 GTCCAATTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
24 1 0.02
25 23 0.53
26 18 0.42
27 1 0.02
ACGTcount: A:0.33, C:0.11, G:0.08, T:0.49
Consensus pattern (25 bp):
TAAAAGAAATTTATTCCTCTTTTAT
Found at i:11889 original size:21 final size:23
Alignment explanation
Indices: 11860--11918 Score: 56
Period size: 21 Copynumber: 2.7 Consensus size: 23
11850 AATTTTTTTC
*
11860 ATTTTATTTTAGTCTTT-AT-TT
1 ATTTAATTTTAGTCTTTCATGTT
*
11881 ATTTAA-TTTAGT-TTTCTTGTT
1 ATTTAATTTTAGTCTTTCATGTT
11902 ATTTAATATTTA-TCTTT
1 ATTTAAT-TTTAGTCTTT
11919 TTGTTTTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
19 3 0.10
20 7 0.23
21 13 0.42
22 1 0.03
23 7 0.23
ACGTcount: A:0.22, C:0.05, G:0.05, T:0.68
Consensus pattern (23 bp):
ATTTAATTTTAGTCTTTCATGTT
Found at i:18039 original size:31 final size:31
Alignment explanation
Indices: 18004--18074 Score: 142
Period size: 31 Copynumber: 2.3 Consensus size: 31
17994 TCATCATTCT
18004 TTTGCTCTCTTTTCTTCCAGCTCTTGGATCC
1 TTTGCTCTCTTTTCTTCCAGCTCTTGGATCC
18035 TTTGCTCTCTTTTCTTCCAGCTCTTGGATCC
1 TTTGCTCTCTTTTCTTCCAGCTCTTGGATCC
18066 TTTGCTCTC
1 TTTGCTCTC
18075 AGGCTTTGAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.06, C:0.32, G:0.13, T:0.49
Consensus pattern (31 bp):
TTTGCTCTCTTTTCTTCCAGCTCTTGGATCC
Found at i:22378 original size:3 final size:3
Alignment explanation
Indices: 22370--22397 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
22360 TTTTTTATTT
22370 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
22398 GAAAATAGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:23800 original size:28 final size:28
Alignment explanation
Indices: 23769--23822 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
23759 CCTAATAGGG
* *
23769 TATTATGATCATTTACTTATTCATAAGT
1 TATTATAATCATTTACTTAATCATAAGT
* *
23797 TATTATAATCGTTTCCTTAATCATAA
1 TATTATAATCATTTACTTAATCATAA
23823 CAACTTATTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.33, C:0.13, G:0.06, T:0.48
Consensus pattern (28 bp):
TATTATAATCATTTACTTAATCATAAGT
Found at i:26789 original size:23 final size:23
Alignment explanation
Indices: 26743--26789 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
26733 TAATTAAATT
*
26743 ATAAAAAATAGTATAAATTATAA
1 ATAAAAAATAGAATAAATTATAA
*
26766 ATAAAAAATA-AATAATTTACTAA
1 ATAAAAAATAGAATAAATTA-TAA
26789 A
1 A
26790 ATAATATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 7 0.33
23 14 0.67
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (23 bp):
ATAAAAAATAGAATAAATTATAA
Found at i:27434 original size:16 final size:16
Alignment explanation
Indices: 27413--27449 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
27403 ATCGGTTATA
27413 AGTGTTGTGACTTACT
1 AGTGTTGTGACTTACT
27429 AGTGTTGTGACTTACT
1 AGTGTTGTGACTTACT
27445 AGTGT
1 AGTGT
27450 CGCACCATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.19, C:0.11, G:0.27, T:0.43
Consensus pattern (16 bp):
AGTGTTGTGACTTACT
Found at i:28924 original size:95 final size:96
Alignment explanation
Indices: 28746--28924 Score: 229
Period size: 95 Copynumber: 1.9 Consensus size: 96
28736 GTTGATGCAA
* * *
28746 TATCGATACCATTGAAAGGGTATCGATACCAAGAAAACATCGAATCTAATTTCGGAATCGATACC
1 TATCGATACCAGTGAAAGGGTATCGATACCAAGAAAACATCAAACCTAATTTCGGAATCGATACC
* * *
28811 GTAAGGGAGTATTAGTACCATAGAAGGGTAG
66 GGAAGAGAGTATCAGTACCATAGAAGGGTAG
* * *
28842 TATCGATACCAAGT-AAAGGGTATCGATACCATG-AAACATCAAACCTAATTTTGGTATCGATAC
1 TATCGATACC-AGTGAAAGGGTATCGATACCAAGAAAACATCAAACCTAATTTCGGAATCGATAC
*
28905 CAGGAAGAG-GTATCGGTACC
65 C-GGAAGAGAGTATCAGTACC
28925 CTAGTGTAGA
Statistics
Matches: 71, Mismatches: 10, Indels: 5
0.83 0.12 0.06
Matches are distributed among these distances:
95 36 0.51
96 33 0.46
97 2 0.03
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.24
Consensus pattern (96 bp):
TATCGATACCAGTGAAAGGGTATCGATACCAAGAAAACATCAAACCTAATTTCGGAATCGATACC
GGAAGAGAGTATCAGTACCATAGAAGGGTAG
Found at i:29501 original size:79 final size:79
Alignment explanation
Indices: 29370--29698 Score: 426
Period size: 79 Copynumber: 4.2 Consensus size: 79
29360 AATGAATGAA
* * * *
29370 ATAAAAGAATAATGCATA-CGAGTGCTTTATTTGCATGAAAGGATGTCATAGCTGAAATGTATAT
1 ATAAAAGAATAATGCATATGGA-TGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTATAT
* *
29434 GAGTATATTGTCAGC
65 GGGTACATTGTCAGC
* * *
29449 ATAAAAGAATAATGCATATGGATGTATTATTGGCATGAAAAGATGCCATAGCTGAAATGTACATG
1 ATAAAAGAATAATGCATATGGATGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTATATG
*
29514 GATACATTGTCAGC
66 GGTACATTGTCAGC
* ** *
29528 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGTTATAGCTGAAATGTATTTG
1 ATAAAAGAATAATGCATATGGATGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTATATG
29593 GGTACATTGTCAGC
66 GGTACATTGTCAGC
* * * ** *
29607 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAATGATGCCCTCTCTGAAATGCATATG
1 ATAAAAGAATAATGCATATGGATGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTATATG
* * *
29672 GGTGCATTATGAGC
66 GGTACATTGTCAGC
*
29686 ATAAAAGTATAAT
1 ATAAAAGAATAAT
29699 TTATTTGGAA
Statistics
Matches: 219, Mismatches: 30, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
79 217 0.99
80 2 0.01
ACGTcount: A:0.37, C:0.11, G:0.22, T:0.30
Consensus pattern (79 bp):
ATAAAAGAATAATGCATATGGATGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTATATG
GGTACATTGTCAGC
Found at i:29662 original size:158 final size:158
Alignment explanation
Indices: 29370--29698 Score: 469
Period size: 158 Copynumber: 2.1 Consensus size: 158
29360 AATGAATGAA
* *
29370 ATAAAAGAATAATGCATACGAGTGCTTTATTTGCATGAAAGGATGTCATAGCTGAAATGTATATG
1 ATAAAAGAATAATGCATACGAGTGCATTATTGGCATGAAAGGATGTCATAGCTGAAATGTATATG
* *
29435 AGTATATTGTCAGCATAAAAGAATAATGCATATGGATGTATTATTGGCATGAAAAGATGCCATAG
66 AGTACATTGTCAGCATAAAAGAATAATGCATATGGATGCATTATTGGCATGAAAAGATGCCATAG
* *
29500 CTGAAATGTACATGGATACATTGTCAGC
131 CTGAAATGCACATGGATACATTATCAGC
* * * *
29528 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGTTATAGCTGAAATGTATTTG
1 ATAAAAGAATAATGCATACGAGTGCATTATTGGCATGAAAGGATGTCATAGCTGAAATGTATATG
* * * * **
29593 GGTACATTGTCAGCATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAATGATGCCCTCT
66 AGTACATTGTCAGCATAAAAGAATAATGCATATGGATGCATTATTGGCATGAAAAGATGCCATAG
* * * *
29658 CTGAAATGCATATGGGTGCATTATGAGC
131 CTGAAATGCACATGGATACATTATCAGC
*
29686 ATAAAAGTATAAT
1 ATAAAAGAATAAT
29699 TTATTTGGAA
Statistics
Matches: 150, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
158 150 1.00
ACGTcount: A:0.37, C:0.11, G:0.22, T:0.30
Consensus pattern (158 bp):
ATAAAAGAATAATGCATACGAGTGCATTATTGGCATGAAAGGATGTCATAGCTGAAATGTATATG
AGTACATTGTCAGCATAAAAGAATAATGCATATGGATGCATTATTGGCATGAAAAGATGCCATAG
CTGAAATGCACATGGATACATTATCAGC
Found at i:30688 original size:41 final size:41
Alignment explanation
Indices: 30643--30724 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
30633 ATGATAGTGA
30643 AGGTCCTATAGAGGTCAATATATGGTTAAATGATGTGATGT
1 AGGTCCTATAGAGGTCAATATATGGTTAAATGATGTGATGT
*
30684 AGGTCCTATAGAGGTCGATATATGGTTAAATGATGTGATGT
1 AGGTCCTATAGAGGTCAATATATGGTTAAATGATGTGATGT
30725 TAATGCTTGA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.30, C:0.07, G:0.28, T:0.34
Consensus pattern (41 bp):
AGGTCCTATAGAGGTCAATATATGGTTAAATGATGTGATGT
Found at i:35814 original size:20 final size:20
Alignment explanation
Indices: 35789--35826 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
35779 CTAATTCAAT
* *
35789 CAGTATTGATACCGTTGATG
1 CAGTATCGATACCATTGATG
35809 CAGTATCGATACCATTGA
1 CAGTATCGATACCATTGA
35827 AAGGGTATCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (20 bp):
CAGTATCGATACCATTGATG
Found at i:35889 original size:19 final size:21
Alignment explanation
Indices: 35865--35926 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 21
35855 ATCTAATTTC
*
35865 GTATCGATACCGT-AAGGG-A
1 GTATCGATACCATAAAGGGTA
*
35884 GTATCGGTACCATAGAAGGGTA
1 GTATCGATACCATA-AAGGGTA
35906 GTATCGATACCAAGTAAAGGG
1 GTATCGATACC-A-TAAAGGG
35927 CATCGATACC
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
19 11 0.31
21 5 0.14
22 11 0.31
23 6 0.17
24 2 0.06
ACGTcount: A:0.34, C:0.15, G:0.31, T:0.21
Consensus pattern (21 bp):
GTATCGATACCATAAAGGGTA
Found at i:35934 original size:95 final size:95
Alignment explanation
Indices: 35810--35989 Score: 249
Period size: 95 Copynumber: 1.9 Consensus size: 95
35800 CCGTTGATGC
* * * *
35810 AGTATCGATACCATTGAAAGGGTATCGATACTAAGAAAACATCGAATCTAA-TTTCGTATCGATA
1 AGTATCGATACCAGTGAAAGGGCATCGATACCAAG-AAACATCGAACCTAATTTTCGTATCGATA
*
35874 CC-GTAAGGGAGTATCGGTACCATAGAAGGGT
65 CCAGAAAGGG-GTATCGGTACCATAGAAGGGT
* *
35905 AGTATCGATACCAAGT-AAAGGGCATCGATACCATGAAACATCGAACCTAATTTTGGTATCGATA
1 AGTATCGATACC-AGTGAAAGGGCATCGATACCAAGAAACATCGAACCTAATTTTCGTATCGATA
35969 CCAGAAAGGGGTATCGGTACC
65 CCAGAAAGGGGTATCGGTACC
35990 CTAATATAGA
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
94 14 0.19
95 53 0.71
96 8 0.11
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.24
Consensus pattern (95 bp):
AGTATCGATACCAGTGAAAGGGCATCGATACCAAGAAACATCGAACCTAATTTTCGTATCGATAC
CAGAAAGGGGTATCGGTACCATAGAAGGGT
Found at i:36493 original size:39 final size:35
Alignment explanation
Indices: 36437--36547 Score: 116
Period size: 34 Copynumber: 3.1 Consensus size: 35
36427 CGAATGAAAT
36437 AAAAGAATAATGCATATGGGTGCATTATTGGCATG
1 AAAAGAATAATGCATATGGGTGCATTATTGGCATG
* * * * * **
36472 AAACATAGCTGAAATGTATATGGGTACATTGTCAGCAT-
1 AAA-AGA-AT--AATGCATATGGGTGCATTATTGGCATG
36510 AAAAGAATAATGCATATGGGTGCATTATTGGCATG
1 AAAAGAATAATGCATATGGGTGCATTATTGGCATG
36545 AAA
1 AAA
36548 GGATGCCATA
Statistics
Matches: 57, Mismatches: 14, Indels: 10
0.70 0.17 0.12
Matches are distributed among these distances:
34 21 0.37
35 6 0.11
36 3 0.05
37 3 0.05
38 3 0.05
39 21 0.37
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.28
Consensus pattern (35 bp):
AAAAGAATAATGCATATGGGTGCATTATTGGCATG
Found at i:36594 original size:79 final size:79
Alignment explanation
Indices: 36435--36751 Score: 448
Period size: 79 Copynumber: 4.1 Consensus size: 79
36425 AACGAATGAA
36435 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATG-AA--A---CATAGCTGAAATGTATATG
1 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTATATG
36494 GGTACATTGTCAGC
66 GGTACATTGTCAGC
*
36508 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGTTGAAATGTATATG
1 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTATATG
36573 GGTACATTGTCAGC
66 GGTACATTGTCAGC
* * * *
36587 ATAAAAGAATAAAGCATATGGGTGCATTATTGGTATGAAAGGATGCCATAGATAAAATGTATATG
1 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTATATG
36652 GGTACATTGTCAGC
66 GGTACATTGTCAGC
* * * * * * * * *
36666 ATAAAATAATAATGGATACGGGTGCATTATTAGTATGAAAGGATACCCTCGCTGAAATGCATATG
1 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTATATG
* *
36731 GGTGCATTATCAGC
66 GGTACATTGTCAGC
36745 ATAAAAG
1 ATAAAAG
36752 TACACTTTAT
Statistics
Matches: 219, Mismatches: 19, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
73 37 0.17
74 2 0.01
76 1 0.00
79 179 0.82
ACGTcount: A:0.38, C:0.11, G:0.24, T:0.28
Consensus pattern (79 bp):
ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTATATG
GGTACATTGTCAGC
Found at i:45347 original size:20 final size:20
Alignment explanation
Indices: 45322--45359 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
45312 TGATTGAATC
45322 AGTATCGATACCGAAGGGGG
1 AGTATCGATACCGAAGGGGG
*
45342 AGTATCGATGCCGAAGGG
1 AGTATCGATACCGAAGGG
45360 AAGGAATCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.29, C:0.16, G:0.39, T:0.16
Consensus pattern (20 bp):
AGTATCGATACCGAAGGGGG
Found at i:45414 original size:19 final size:19
Alignment explanation
Indices: 45390--45432 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
45380 AACATAATGC
45390 AAAATGGTACCAATACCAT
1 AAAATGGTACCAATACCAT
* **
45409 AAAATGGTATCGGTACCAT
1 AAAATGGTACCAATACCAT
45428 AAAAT
1 AAAAT
45433 AGTATCGGTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.47, C:0.16, G:0.14, T:0.23
Consensus pattern (19 bp):
AAAATGGTACCAATACCAT
Found at i:45437 original size:19 final size:19
Alignment explanation
Indices: 45403--45447 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
45393 ATGGTACCAA
*
45403 TACCATAAAATGGTATCGG
1 TACCATAAAATAGTATCGG
45422 TACCATAAAATAGTATCGG
1 TACCATAAAATAGTATCGG
45441 TACCATA
1 TACCATA
45448 GTATGGTAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.27
Consensus pattern (19 bp):
TACCATAAAATAGTATCGG
Found at i:45460 original size:22 final size:23
Alignment explanation
Indices: 45432--45478 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
45422 TACCATAAAA
45432 TAGTATCGGTACCATAGTAT-GG
1 TAGTATCGGTACCATAGTATAGG
* *
45454 TAGTATCGTTACCATGGTATAGG
1 TAGTATCGGTACCATAGTATAGG
45477 TA
1 TA
45479 TCGATACTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.34
Consensus pattern (23 bp):
TAGTATCGGTACCATAGTATAGG
Found at i:45890 original size:54 final size:54
Alignment explanation
Indices: 45810--46850 Score: 1021
Period size: 54 Copynumber: 19.3 Consensus size: 54
45800 TTACCAAATA
* * * *
45810 GGCAATAAGTATGCATTTCACGGAATTCATCCTATATGGATGAATAACCGTTTC
1 GGCACTAAGTGTGCATTTCACAGAATTCATCCTATGTGGATGAATAACCGTTTC
*** * * *
45864 GGCACTAAGTGTGCATAAAACAGAATTCATCCTATATTGATGAATAAACGTTTC
1 GGCACTAAGTGTGCATTTCACAGAATTCATCCTATGTGGATGAATAACCGTTTC
* *
45918 GACACTAAGTGTACATTTCAC-GAAATTCATCCTATGTGGATGAATAACCGTTTC
1 GGCACTAAGTGTGCATTTCACAG-AATTCATCCTATGTGGATGAATAACCGTTTC
* * **
45972 GGCACAAAGTGTGCATTTCACGGAATTCATATTATGTGGATGAATAACCGTTTC
1 GGCACTAAGTGTGCATTTCACAGAATTCATCCTATGTGGATGAATAACCGTTTC
* * * * * **
46026 AGCACTAAGTGTTCATTTCACATAATTCGTCCTATGTGGACGAATAATTGTTTC
1 GGCACTAAGTGTGCATTTCACAGAATTCATCCTATGTGGATGAATAACCGTTTC
** * * * * *
46080 AACACTAAGTGTTCACTTCACGGAATCCATCCTATGTGGACGAATAACCGTTTC
1 GGCACTAAGTGTGCATTTCACAGAATTCATCCTATGTGGATGAATAACCGTTTC
* * *
46134 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATAAATAACCATTTC
1 GGCACTAAGTGTGCATTTCACAGAATTCATCCTATGTGGATGAATAACCGTTTC
* *
46188 GACACTAAGTGTGCATTTCACAGAATTCATACTATGTGGATGAATAACCGTTTC
1 GGCACTAAGTGTGCATTTCACAGAATTCATCCTATGTGGATGAATAACCGTTTC
** *
46242 GGCACTAAGTGTGCATTTCATGGAATTCATCCTATGTGGATGAATGACCGTTTC
1 GGCACTAAGTGTGCATTTCACAGAATTCATCCTATGTGGATGAATAACCGTTTC
* * * * **
46296 AGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTTGACGAATAAATGTTTC
1 GGCACTAAGTGTGCATTTCACAGAATTCATCCTATGTGGATGAATAACCGTTTC
* ** * * *
46350 AGCACT-AGTGTGCATTTCACAGAATTCATCCTATGTATACGAATAACCATTTT
1 GGCACTAAGTGTGCATTTCACAGAATTCATCCTATGTGGATGAATAACCGTTTC
* * * * *
46403 GGCACTAAGTGTGCATTTCACGGAATTCGTCATATGTTGATGAACAACCGTTTC
1 GGCACTAAGTGTGCATTTCACAGAATTCATCCTATGTGGATGAATAACCGTTTC
** * * * * *
46457 GGCACTAAGTGTGCATTTCATGGAATTCATCATACGTTGAAGAAAAACCGTTTC
1 GGCACTAAGTGTGCATTTCACAGAATTCATCCTATGTGGATGAATAACCGTTTC
* * * * * **
46511 GGCACTAAGTGTGCATTTCACAGAATTTATCATACGTTGATGAACAACTATTTC
1 GGCACTAAGTGTGCATTTCACAGAATTCATCCTATGTGGATGAATAACCGTTTC
*** * ** * *
46565 GGCACTAAGTGTGCAACCCACATAATTCATTATATGTTGATGAACAACCGTTTC
1 GGCACTAAGTGTGCATTTCACAGAATTCATCCTATGTGGATGAATAACCGTTTC
* * * *
46619 GGCACTAAGTGTGCATTTCAC-GAAATTCATCATATGTTGATGAACAACCGTTTT
1 GGCACTAAGTGTGCATTTCACAG-AATTCATCCTATGTGGATGAATAACCGTTTC
* *** * * * * *
46673 GGCACTAATTGTGCAACCCAC-GAAATTCATCATATATTGATGAACAACCATTTC
1 GGCACTAAGTGTGCATTTCACAG-AATTCATCCTATGTGGATGAATAACCGTTTC
* ** * ** *
46727 GGCACTAAGTGTGAAACTCACAGAATTCATCATATGTTAATGAATAACCG-TAC
1 GGCACTAAGTGTGCATTTCACAGAATTCATCCTATGTGGATGAATAACCGTTTC
* ** ** * * * ** * *
46780 AGGCACTATGTGTGCAACTCAGGGAATTCATCATAGGTTGATGAACGACCGTATA
1 -GGCACTAAGTGTGCATTTCACAGAATTCATCCTATGTGGATGAATAACCGTTTC
*
46835 GGCACTACGTGTGCAT
1 GGCACTAAGTGTGCAT
46851 CTTAATAAAA
Statistics
Matches: 843, Mismatches: 137, Indels: 14
0.85 0.14 0.01
Matches are distributed among these distances:
53 48 0.06
54 793 0.94
55 2 0.00
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.31
Consensus pattern (54 bp):
GGCACTAAGTGTGCATTTCACAGAATTCATCCTATGTGGATGAATAACCGTTTC
Found at i:47263 original size:45 final size:46
Alignment explanation
Indices: 47125--47291 Score: 239
Period size: 46 Copynumber: 3.7 Consensus size: 46
47115 TTTTAATTGA
47125 CATAAAAGGCATGAAAGGATGCCATAAATGAAAATGCATAAAT-GTG
1 CATAAAAGGCATGAAAGGATGCCATAAATGAAAATGCAT-AATGGTG
* *
47171 CATAAAAGGTATGAAATGATGCCATAAATGAAAATGCATAATGGTG
1 CATAAAAGGCATGAAAGGATGCCATAAATGAAAATGCATAATGGTG
* * **
47217 CATTATAGGCATGAAAGGATGTAATAAAT-AAAATGCATAATGGTG
1 CATAAAAGGCATGAAAGGATGCCATAAATGAAAATGCATAATGGTG
* *
47262 CATAACAGGCATGAAAGGATGTCATAAATG
1 CATAAAAGGCATGAAAGGATGCCATAAATG
47292 TGAAATTGAT
Statistics
Matches: 108, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
45 45 0.42
46 63 0.58
ACGTcount: A:0.46, C:0.10, G:0.22, T:0.23
Consensus pattern (46 bp):
CATAAAAGGCATGAAAGGATGCCATAAATGAAAATGCATAATGGTG
Found at i:52020 original size:54 final size:54
Alignment explanation
Indices: 51951--52934 Score: 1009
Period size: 54 Copynumber: 18.2 Consensus size: 54
51941 ACCAAATAGG
*
51951 CACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGCTTCGA
1 CACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGA
* * * **
52005 TACTAACTGTACATTTCATAGAATTCATCCTATGTGGATGAATAACCGTTTCGA
1 CACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGA
* **
52059 CACTAAGTGTGCATTTTACGGAATTCATCCTATGTGGGGGAATAACCGTTTC-A
1 CACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGA
* * * **
52112 GCACTAAGTGTGCATTTCACGGAATTCATCCTGTGTAGACGAATAATTGTTTCGA
1 -CACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGA
* **
52167 CACTAAGTGTGCATTTCACGGAATTCATCCTATATGGATGAATAATTGTTTC-A
1 CACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGA
* *
52220 GCACTAAGTGTACATTTCAAGGAATTCATCCTATGTGGATGAATAACCGTTTCGA
1 -CACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGA
* * **
52275 CACTAAGTGTGCATTTCACAGAATTCATCCTTTGTGGATGAATAAATGTTTCGA
1 CACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGA
* *** * * *
52329 CACTAAGTATGCATTTCATATAATTCATTCTATGCGGATGAATAACCATTTC-A
1 CACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGA
* * * *
52382 GCACTAAGTATGCATTTCACGGAATTCATCCTATGTGGATGAATGATCGTTTCGG
1 -CACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGA
*
52437 CACTAAGTGTGCATTTCACGGAATTCATCCTTTGTGGATGAATAACCGTTTC-A
1 CACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGA
* ** *
52490 GCACTAACTGTGCATTTCACGGAATTCATCCTATGTGGAAAAATAACCGTTTCGG
1 -CACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGA
* * * *
52545 CACTAAGTGTGCATTTTACGGAATTC-GCCATATGTTGATGAACAACCGTTTCGA
1 CACTAAGTGTGCATTTCACGGAATTCATCC-TATGTGGATGAATAACCGTTTCGA
* * * * *
52599 CACTAATTGTGCATTTCACGGAATTCATCATATGAT-GATGAACAACCATTT-TA
1 CACTAAGTGTGCATTTCACGGAATTCATCCTATG-TGGATGAATAACCGTTTCGA
* * ** * * *
52652 GCACTAAGTGTGCATTTCACGG-ATTCATCATAGGTTAATGAACAACTGTTTCGG
1 -CACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGA
*** * * * * * ** *
52706 CACTAAGTGTGCAACCCACAGAATTTATCATATGTTGATGAACATTCGTTTCAA
1 CACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGA
* * * * *
52760 CACTAAGTGTGTATTTCACGGAATTCATCATAGGTTGATGAACAACCGTTTC-A
1 CACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGA
*** * * *
52813 GCACTAAGTGTGCAACCCACGGAATTCATCAATTAT-T-GATGAACAACCGTTACGA
1 -CACTAAGTGTGCATTTCACGGAATTCATC--CTATGTGGATGAATAACCGTTTCGA
* ** * * * * * * *
52868 CACTATGTGTGCAACTCATGGAATTCATCATATGTTGATGAATACCCGTATAGG
1 CACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGA
*
52922 CACTATGTGTGCA
1 CACTAAGTGTGCA
52935 ACTCACAACA
Statistics
Matches: 786, Mismatches: 123, Indels: 42
0.83 0.13 0.04
Matches are distributed among these distances:
52 4 0.01
53 48 0.06
54 726 0.92
55 6 0.01
56 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (54 bp):
CACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGA
Found at i:53414 original size:45 final size:46
Alignment explanation
Indices: 53268--53431 Score: 240
Period size: 46 Copynumber: 3.6 Consensus size: 46
53258 TAATTGACAT
*
53268 AAAAGACATGAAAGGATGTCATAAATGAAAATGCATAACGGTGCATA
1 AAAAG-CATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATA
* *
53315 AAAGGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATT
1 AAAAGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATA
* * * * *
53361 AAAGGCATGAAAGTATGCCACAAATG-AAATGTATAATGGTGCATA
1 AAAAGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATA
53406 AAAAGCATGAAAGGATGCCATAAATG
1 AAAAGCATGAAAGGATGCCATAAATG
53432 TGAAATTGAT
Statistics
Matches: 106, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
45 39 0.37
46 63 0.59
47 4 0.04
ACGTcount: A:0.46, C:0.12, G:0.23, T:0.20
Consensus pattern (46 bp):
AAAAGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATA
Found at i:56345 original size:21 final size:20
Alignment explanation
Indices: 56321--56370 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
56311 CGATGAACAA
56321 TATCGATACTGAT-TGAAGAAG
1 TATCGATACTGATGTG--GAAG
* *
56342 TATCGATATTGATGTGGAGG
1 TATCGATACTGATGTGGAAG
56362 TATCGATAC
1 TATCGATAC
56371 AATGAGTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 11 0.44
21 12 0.48
22 2 0.08
ACGTcount: A:0.32, C:0.10, G:0.26, T:0.32
Consensus pattern (20 bp):
TATCGATACTGATGTGGAAG
Found at i:56817 original size:17 final size:17
Alignment explanation
Indices: 56781--56819 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
56771 AACAATTTTA
*
56781 TTTATTTTATGGAATAT
1 TTTATTTTATAGAATAT
* *
56798 TTTATTTTATATAATGT
1 TTTATTTTATAGAATAT
56815 TTTAT
1 TTTAT
56820 ATAAATGGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (17 bp):
TTTATTTTATAGAATAT
Found at i:56907 original size:15 final size:15
Alignment explanation
Indices: 56863--56909 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
56853 TAGTTGGATA
*
56863 TGAATATGTTCTACG
1 TGAATATGTTCTATG
* *
56878 TGAAAATGTTTTATG
1 TGAATATGTTCTATG
*
56893 TGAATATGTACTATG
1 TGAATATGTTCTATG
56908 TG
1 TG
56910 GATGTGTTTG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.30, C:0.06, G:0.21, T:0.43
Consensus pattern (15 bp):
TGAATATGTTCTATG
Found at i:57057 original size:25 final size:25
Alignment explanation
Indices: 57039--57118 Score: 90
Period size: 25 Copynumber: 3.2 Consensus size: 25
57029 TTCTATACGG
57039 TCCTTCGAGATAAATTTCTAAGTGC
1 TCCTTCGAGATAAATTTCTAAGTGC
* * *
57064 TCCTTCGGGATGAATTTCTACGTGC
1 TCCTTCGAGATAAATTTCTAAGTGC
* * * *
57089 TCCATCGAGACAAA-TTCTAAGCGG
1 TCCTTCGAGATAAATTTCTAAGTGC
57113 TCCTTC
1 TCCTTC
57119 AGGAAAAATC
Statistics
Matches: 44, Mismatches: 11, Indels: 1
0.79 0.20 0.02
Matches are distributed among these distances:
24 12 0.27
25 32 0.73
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.33
Consensus pattern (25 bp):
TCCTTCGAGATAAATTTCTAAGTGC
Found at i:58800 original size:21 final size:21
Alignment explanation
Indices: 58774--58817 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
58764 TGTCATAGCA
58774 TTTTTA-TTTTACTTCTTCATT
1 TTTTTAGTTTTACTTCTT-ATT
*
58795 TTTTTAGTTTTACTTGTTATT
1 TTTTTAGTTTTACTTCTTATT
58816 TT
1 TT
58818 CCTTGTCTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.14, C:0.09, G:0.05, T:0.73
Consensus pattern (21 bp):
TTTTTAGTTTTACTTCTTATT
Found at i:66921 original size:16 final size:16
Alignment explanation
Indices: 66902--66936 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
66892 AATATATAAT
66902 TATAATATGATTATGATA
1 TATAA-ATG-TTATGATA
66920 TATAAATGTTATGATA
1 TATAAATGTTATGATA
66936 T
1 T
66937 GAAGAGTTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.53
17 3 0.18
18 5 0.29
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (16 bp):
TATAAATGTTATGATA
Found at i:66986 original size:18 final size:18
Alignment explanation
Indices: 66947--66979 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
66937 GAAGAGTTGG
66947 ATATGTTGATATATTGAT
1 ATATGTTGATATATTGAT
66965 ATAT-TTGATA-ATTGA
1 ATATGTTGATATATTGA
66980 ATAATATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 6 0.40
18 4 0.27
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.48
Consensus pattern (18 bp):
ATATGTTGATATATTGAT
Found at i:67296 original size:19 final size:19
Alignment explanation
Indices: 67239--67304 Score: 69
Period size: 19 Copynumber: 3.4 Consensus size: 19
67229 ATGTATTGGA
*
67239 CTATGAATTTGAAAAATAAG
1 CTATGAATCT-AAAAATAAG
* * *
67259 CTATGAATCTGACAGTAAG
1 CTATGAATCTAAAAATAAG
*
67278 CTATGAGTCTAAAAATAAG
1 CTATGAATCTAAAAATAAG
*
67297 TTATGAAT
1 CTATGAAT
67305 TTGGAAATAA
Statistics
Matches: 36, Mismatches: 10, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
19 27 0.75
20 9 0.25
ACGTcount: A:0.44, C:0.09, G:0.17, T:0.30
Consensus pattern (19 bp):
CTATGAATCTAAAAATAAG
Found at i:67386 original size:12 final size:12
Alignment explanation
Indices: 67358--67401 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
67348 AAGTATTTAT
*
67358 TATGAACATGAAA
1 TATGAAAATG-AA
67371 TATGAAAATGAA
1 TATGAAAATGAA
**
67383 TATGTGAATGAA
1 TATGAAAATGAA
67395 TATGAAA
1 TATGAAA
67402 GTGGCAAATG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
12 17 0.65
13 9 0.35
ACGTcount: A:0.52, C:0.02, G:0.18, T:0.27
Consensus pattern (12 bp):
TATGAAAATGAA
Done.