genome.fa.s493.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000493.1 Hibiscus syriacus cultivar Beakdansim tig00000940_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111968

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18737--18765	3	9.7	3	100	0	58	0	34	0	65	0.93
18834--18884	18	2.8	18	93	0	84	37	25	9	27	1.87
18834--18893	18	3.3	18	90	0	75	35	28	10	26	1.89
28131--28162	16	2.0	16	100	0	64	43	18	31	6	1.75
29720--29800	40	2.0	41	87	2	119	43	7	18	30	1.78
31734--31813	42	1.9	42	84	5	108	35	21	21	22	1.96
31642--32709	257	4.1	256	88	3	1538	34	17	15	32	1.91
32232--32331	42	2.4	41	78	3	128	33	21	20	26	1.97
32493--32588	42	2.3	41	83	3	129	33	23	18	23	1.97
37422--37875	59	7.8	59	88	2	677	33	10	18	36	1.86
38088--38342	136	1.9	136	91	1	422	30	13	24	32	1.93
38088--38361	68	4.0	68	89	0	379	29	13	25	31	1.94
38293--38449	81	1.9	81	85	2	217	34	11	25	28	1.91
38422--38507	29	3.0	29	91	0	136	43	10	20	25	1.84
43158--43240	41	2.0	41	95	0	148	27	9	24	38	1.86
43200--43508	59	5.2	59	90	1	467	33	9	20	37	1.85
43200--43509	120	2.6	119	89	2	473	32	10	20	37	1.85
43733--43881	68	2.2	68	92	2	246	29	14	24	30	1.95
43822--43928	50	2.1	50	91	1	169	25	17	26	30	1.97
44051--44130	29	2.8	29	86	0	115	43	10	18	27	1.82
53758--53797	22	1.9	22	85	10	57	30	12	22	35	1.91
67184--67244	25	2.5	26	81	7	74	22	8	1	67	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67242--67291	14	3.6	14	94	5	84	24	12	4	60	1.49
67214--67292	28	2.8	28	81	7	81	24	10	2	63	1.38
69507--69543	14	2.8	14	88	8	51	16	16	8	59	1.59
69498--69547	6	8.0	6	80	8	55	18	16	10	56	1.67
69498--69555	20	3.0	20	87	5	75	18	15	10	55	1.68
71538--71576	14	3.0	13	85	10	53	84	0	15	0	0.62
74275--74429	42	3.7	42	87	1	222	27	16	18	38	1.92
74255--74387	20	6.4	20	71	13	81	28	15	18	36	1.92
74299--74406	22	5.1	22	65	17	66	27	16	18	37	1.93
74560--74644	37	2.4	34	78	5	89	34	20	7	38	1.79
74589--74665	37	2.1	37	80	4	84	36	24	6	32	1.81
74804--75731	123	7.6	123	88	2	1296	40	15	18	25	1.90
74804--76424	246	6.4	246	78	11	1398	39	15	18	25	1.91
75644--76163	138	3.8	138	83	3	627	37	16	18	27	1.92
76056--76423	119	3.1	116	73	13	325	39	14	18	26	1.90
77941--78002	25	2.5	26	84	5	83	22	8	3	66	1.33
77941--77998	26	2.3	25	87	3	80	22	8	3	65	1.36
78000--78035	14	2.6	14	91	8	56	25	11	2	61	1.43
82821--82878	24	2.4	24	94	0	98	18	17	24	39	1.92
83654--83708	28	1.9	29	85	3	76	70	0	9	20	1.13
84878--84945	5	12.8	5	72	27	52	54	4	0	41	1.20
84879--84959	8	9.8	8	69	25	53	56	4	0	38	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84882--84985	37	2.9	34	79	16	95	54	4	0	39	1.28
84878--84985	18	5.6	19	72	18	82	54	4	0	39	1.27
84882--84962	28	3.0	27	78	10	85	56	4	0	38	1.21
84932--85075	71	2.1	69	79	11	152	50	5	2	42	1.37
84971--85043	26	2.7	25	81	12	74	47	5	1	45	1.34
85053--85164	22	5.1	20	75	17	82	43	8	3	43	1.53
85043--85142	45	2.2	44	82	13	121	45	9	3	43	1.51
86097--86123	4	6.8	4	100	0	54	77	0	0	22	0.76
87719--87771	21	2.6	20	83	13	72	22	9	7	60	1.53
87727--87856	51	2.6	48	80	6	134	19	13	11	56	1.67
88014--88057	15	2.9	15	81	18	56	20	2	4	72	1.13
88018--88057	14	2.7	14	85	11	53	20	2	5	72	1.15
88019--88084	28	2.3	30	79	12	75	22	3	4	69	1.20
110979--111202	111	2.0	110	92	0	376	35	20	16	28	1.94

Tables:   1

The End!