genome.fa.s4932.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004932.1 Hibiscus syriacus cultivar Beakdansim tig00011096_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116796

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81--144	3	22.7	3	78	9	64	64	0	1	34	1.03
90--147	25	2.3	25	82	14	75	65	0	0	34	0.93
7921--7946	2	13.0	2	100	0	52	0	50	0	50	1.00
8228--8257	15	1.9	16	93	6	53	23	20	23	33	1.97
10039--10073	15	2.3	15	90	0	52	20	22	8	48	1.76
16374--16414	21	1.9	22	85	5	57	36	2	9	51	1.48
19106--19169	3	21.3	3	93	0	110	34	0	1	64	1.03
21147--21511	131	2.8	131	85	0	505	33	11	16	39	1.84
23880--23922	23	1.9	22	85	4	59	44	2	9	44	1.49
24319--24363	18	2.5	17	82	10	54	62	0	4	33	1.15
24324--24364	18	2.2	19	86	4	57	65	0	4	29	1.13
24421--24462	20	2.2	20	87	12	61	59	0	2	38	1.10
24662--24708	17	2.7	18	96	3	87	29	10	29	29	1.91
25065--25668	259	2.4	254	89	6	922	41	19	12	26	1.87
26704--26734	13	2.4	13	94	0	53	67	0	0	32	0.91
26895--26965	32	2.3	32	80	9	85	74	4	8	12	1.19
27073--27138	2	32.5	2	96	3	123	50	0	1	48	1.10
27245--27325	22	3.5	24	74	17	73	74	3	6	16	1.17
27425--27464	4	9.8	4	89	5	62	75	0	2	22	0.93
28330--28363	11	3.0	11	91	4	50	41	0	11	47	1.40
29176--30022	106	8.0	106	92	2	1303	22	18	24	34	1.96
31674--31719	16	2.8	17	80	6	51	0	17	8	73	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31707--31758	16	3.6	14	80	10	52	0	13	5	80	0.88
31680--31752	16	4.5	16	69	19	53	0	16	5	78	0.94
34644--34673	13	2.3	13	94	0	51	66	0	0	33	0.92
35012--35056	2	22.5	2	100	0	90	51	0	0	48	1.00
35162--35226	23	2.7	24	79	15	64	72	6	6	15	1.25
35338--35376	9	4.0	9	81	18	51	74	0	2	23	0.94
36200--36233	11	3.0	11	91	4	50	44	0	11	44	1.40
38125--38154	15	2.0	15	100	0	60	46	26	13	13	1.80
38529--38569	3	14.0	3	84	5	57	36	2	0	60	1.10
38528--38585	26	2.2	27	81	9	75	43	1	0	55	1.10
42054--42078	4	6.2	4	100	0	50	72	0	0	28	0.86
44545--45220	258	2.6	259	88	2	966	35	15	14	34	1.89
44981--45060	42	1.9	41	87	2	115	35	22	18	23	1.96
46244--46365	64	1.9	64	84	3	165	34	20	18	26	1.96
46972--47041	18	3.8	18	77	7	77	20	20	30	30	1.97
50239--50288	22	2.3	22	100	0	100	18	50	24	8	1.73
50225--50269	17	2.6	17	96	3	81	17	51	22	8	1.73
50324--50388	28	2.3	29	83	2	78	32	6	24	36	1.80
57422--57459	19	2.0	19	94	0	67	18	21	23	36	1.95
57427--57459	10	3.4	10	83	8	50	12	18	27	42	1.85
57429--57462	9	3.7	9	84	7	50	14	20	26	38	1.91
57470--57521	13	4.3	13	81	18	76	17	48	23	11	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57469--57515	22	2.1	23	96	4	87	17	51	23	8	1.72
57551--57618	29	2.3	29	87	0	100	32	4	25	38	1.76
61073--61440	54	6.8	54	89	1	522	30	15	18	35	1.92
67751--67849	3	31.0	3	78	8	81	59	0	6	34	1.22
67751--67848	19	5.4	19	75	13	82	59	0	6	34	1.22
67754--67829	26	3.0	26	90	1	118	59	0	7	32	1.26
68144--68264	41	3.0	41	69	13	104	28	13	18	39	1.88
69750--69805	21	2.7	21	94	0	94	21	7	23	48	1.74
72768--72837	34	2.2	31	85	12	90	41	4	17	37	1.69
74630--74676	15	3.1	15	100	0	94	19	14	12	53	1.73
75762--75920	60	2.7	59	87	3	232	35	13	18	33	1.89
77467--77538	36	2.0	36	94	0	126	26	18	36	19	1.94
78682--78749	30	2.3	29	89	5	100	36	8	5	48	1.59
85923--86044	47	2.6	48	92	1	201	18	15	31	34	1.93
88321--88396	36	2.1	36	85	7	100	47	1	3	47	1.29
88543--88580	20	1.9	20	88	0	58	21	26	10	42	1.85
93654--93715	3	20.3	3	81	18	67	29	4	0	66	1.12
93728--93769	2	21.0	2	100	0	84	50	0	0	50	1.00
93992--94050	27	2.2	26	82	14	68	52	1	1	44	1.21
93786--94042	134	1.9	132	83	4	327	38	9	8	43	1.67
94541--94620	27	3.0	26	78	10	81	30	3	3	62	1.30
99832--99908	7	10.3	7	78	21	77	80	0	16	2	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99834--99908	15	4.8	16	82	12	102	80	0	17	2	0.84
99834--99908	32	2.4	30	85	12	107	80	0	17	2	0.84
99834--99909	16	5.0	14	77	17	80	78	0	18	2	0.86
104663--104717	22	2.5	22	90	0	92	34	9	14	41	1.77
105395--106182	76	10.4	76	92	0	1276	25	19	20	34	1.96
106336--106412	9	8.4	9	76	11	68	42	0	0	57	0.99
106333--106412	18	4.8	16	82	15	92	43	0	0	56	0.99
106336--106401	3	22.3	3	81	9	82	40	0	0	59	0.98
107775--107833	3	20.3	3	78	16	54	27	3	0	69	1.04
107856--107880	2	12.5	2	100	0	50	48	0	0	52	1.00
109883--109933	15	3.4	15	86	0	75	17	37	19	25	1.94
109995--110032	2	19.0	2	88	0	58	0	52	2	44	1.14
110465--110514	26	1.9	26	95	0	91	38	8	6	48	1.57
112617--112697	26	3.2	24	84	10	92	23	23	29	23	1.99
112643--112700	24	2.4	25	91	8	93	25	25	29	18	1.98
112887--112970	31	2.8	31	85	3	109	32	26	2	39	1.69
113360--113399	21	2.0	20	85	5	53	17	20	30	32	1.95

Tables:   1

The End!