Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004934.1 Hibiscus syriacus cultivar Beakdansim tig00011100_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62537

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12084--12295
89
2.4
90
87
3
295
26
29
19
24
1.98
12495--12555
3
21.0
3
77
12
65
27
3
1
67
1.16
12670--12739
25
2.8
25
97
0
131
40
20
12
27
1.88
16660--16724
35
2.0
31
85
11
85
47
9
0
43
1.35
16804--16849
24
2.0
24
83
12
60
47
2
2
47
1.26
20477--20615
36
3.9
35
85
2
188
17
25
20
35
1.95
20477--20620
72
2.0
71
91
1
234
17
25
20
37
1.93
23510--23553
20
2.2
20
83
4
52
43
6
2
47
1.42
24205--24234
13
2.4
12
94
5
51
60
3
0
36
1.14
31397--31423
10
2.7
10
100
0
54
81
7
0
11
0.87
32565--32629
3
22.7
3
71
25
52
66
1
0
32
1.01
32542--32609
9
6.9
10
76
17
54
69
1
0
29
0.98
32553--32625
19
4.2
17
80
17
80
67
1
0
31
1.00
32553--32625
5
14.8
5
79
14
57
67
1
0
31
1.00
32544--32630
35
2.5
35
78
17
101
67
1
0
31
0.98
32538--32637
17
5.6
18
75
19
84
68
2
0
30
1.01
32542--32631
26
3.2
26
80
17
83
68
1
0
30
0.96
32643--32692
22
2.3
22
85
0
64
46
8
2
44
1.44
32730--32774
23
1.9
24
81
4
56
44
4
6
44
1.50
32744--33008
33
7.5
33
80
9
224
40
10
5
43
1.62
32744--33008
35
7.6
35
82
9
249
40
10
5
43
1.62
32792--33008
68
3.1
68
85
2
272
41
11
5
41
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34310--34364
28
2.0
28
100
0
110
40
10
18
30
1.85
51475--51676
60
3.4
59
83
2
233
39
10
11
38
1.77
51517--51850
60
5.6
60
79
4
325
33
13
14
38
1.85
51517--51850
120
2.8
120
78
6
370
33
13
14
38
1.85
54443--54500
23
2.5
22
80
5
62
39
13
15
31
1.86
58529--58606
23
3.4
23
78
7
86
41
23
14
21
1.89
58951--58996
12
4.2
11
76
18
51
34
0
4
60
1.16
58953--58996
21
2.1
21
87
8
63
34
0
4
61
1.16
62106--62233
60
2.2
59
84
7
161
31
23
5
39
1.77
62361--62505
60
2.4
60
86
2
193
40
3
22
33
1.71
62361--62532
60
2.9
60
76
8
145
42
4
20
31
1.73

Tables:   1

The End!