genome.fa.s4935.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004935.1 Hibiscus syriacus cultivar Beakdansim tig00011102_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77409

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3729--3783	14	3.9	14	80	2	56	29	25	21	23	1.99
19955--20024	36	1.9	36	85	5	97	35	17	17	30	1.92
20756--20795	21	1.9	21	90	10	64	40	20	25	15	1.90
21431--21467	19	1.9	19	89	10	58	24	0	32	43	1.55
30738--30782	19	2.4	19	92	3	74	11	11	11	66	1.45
33962--34865	106	8.5	106	94	0	1567	33	24	17	23	1.96
34812--34914	44	2.3	44	98	0	197	31	25	19	24	1.98
35031--35170	71	2.0	71	84	2	183	28	21	25	25	1.99
36665--36732	5	14.4	5	74	20	58	19	2	0	77	0.89
36680--36737	9	6.9	9	80	20	56	18	1	0	79	0.82
36657--36738	14	5.9	13	76	17	76	18	3	0	78	0.90
36670--36738	9	7.4	9	72	16	52	18	2	0	78	0.88
37368--37748	186	2.0	186	99	0	753	35	12	14	37	1.84
46219--46257	13	2.9	13	92	3	60	43	7	12	35	1.72
46719--46794	23	3.6	21	79	10	75	26	17	30	26	1.97
50599--50647	21	2.4	21	83	10	57	34	6	2	57	1.35
54467--54509	22	2.0	22	90	0	68	20	6	23	48	1.73
54489--54587	43	2.3	43	84	5	128	32	12	21	34	1.90
54558--54765	42	4.9	41	79	9	161	23	17	23	35	1.95
54599--54764	42	3.9	42	84	4	183	22	19	23	34	1.97
55172--55231	21	2.9	21	87	0	75	1	33	20	45	1.61
55227--55266	21	1.9	21	89	0	62	10	37	17	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66436--66661	83	2.7	83	77	4	224	35	22	11	30	1.90
66555--66665	41	2.7	40	72	14	109	40	23	10	25	1.87
71672--71706	13	2.7	13	91	8	54	77	5	17	0	0.96

Tables:   1

The End!