Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004936.1 Hibiscus syriacus cultivar Beakdansim tig00011105_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67252

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2354--2503
64
2.4
64
80
7
180
35
17
18
28
1.94
2887--2967
29
2.8
29
88
3
128
45
16
19
18
1.85
7623--7675
20
2.6
20
81
3
61
26
20
16
35
1.94
9452--9488
14
2.5
15
86
8
58
5
48
32
13
1.65
9459--9488
14
2.1
14
100
0
60
6
53
26
13
1.64
12336--12381
13
3.6
13
77
16
51
69
8
2
19
1.25
12335--12388
25
2.1
26
93
3
92
64
9
3
22
1.38
15742--15791
2
25.0
2
100
0
100
50
0
0
50
1.00
15774--16391
324
1.9
326
82
7
790
35
11
15
37
1.84
16887--17043
80
2.0
80
85
0
215
29
14
22
33
1.93
17191--17295
51
2.1
51
100
0
210
40
20
7
32
1.80
22165--22208
20
2.3
19
84
11
54
77
4
2
15
1.04
23006--23055
21
2.4
21
83
16
68
52
18
8
22
1.71
24290--24366
31
2.5
31
95
0
136
46
12
11
28
1.77
24440--24475
2
18.0
2
100
0
72
50
0
0
50
1.00
28213--28268
24
2.3
24
75
0
58
19
10
14
55
1.68
29676--29730
25
2.2
25
100
0
110
30
10
10
47
1.73
36721--36774
23
2.5
22
79
8
65
27
20
14
37
1.92
38697--38731
12
2.8
13
86
8
54
45
8
5
40
1.58
39005--39070
25
2.7
25
97
2
125
48
12
16
22
1.79
41507--41556
18
2.8
18
87
0
64
36
6
22
36
1.79
42948--42994
23
2.0
24
84
12
62
65
0
10
23
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44899--44974
31
2.5
28
80
14
89
35
9
17
38
1.81
44977--45045
36
1.9
36
90
0
111
42
14
20
23
1.89
44932--45127
101
1.9
100
89
6
306
37
13
19
29
1.90
45250--46046
107
7.5
107
91
0
1292
23
19
23
33
1.97
46502--46576
32
2.3
32
86
0
96
33
21
17
28
1.96
46519--46588
32
2.2
32
89
0
104
34
20
17
28
1.95
47668--47725
10
5.5
10
76
15
55
0
15
3
81
0.83
47681--47730
19
2.5
19
80
6
55
0
16
4
80
0.87
47690--47728
12
3.0
13
85
11
53
0
15
5
79
0.90
57452--57541
42
2.1
42
91
0
144
40
35
7
16
1.78
58735--58765
11
2.8
11
95
0
53
67
6
9
16
1.39
62540--62584
20
2.2
20
84
7
56
64
0
22
13
1.28

Tables:   1

The End!