Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004937.1 Hibiscus syriacus cultivar Beakdansim tig00011106_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 118754
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Found at i:478 original size:12 final size:12
Alignment explanation
Indices: 461--485 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
451 AAAGAAGGTG
461 AAAAGAAGAAGA
1 AAAAGAAGAAGA
473 AAAAGAAGAAGA
1 AAAAGAAGAAGA
485 A
1 A
486 TGAGGTAGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AAAAGAAGAAGA
Found at i:2431 original size:20 final size:20
Alignment explanation
Indices: 2376--2436 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
2366 AGGGTGTCAA
2376 AGTGTATCCATACAC-CTTGC
1 AGTGTATCCATACACTC-TGC
* *
2396 AGTGTATCTATGCACTCTGC
1 AGTGTATCCATACACTCTGC
*
2416 AGTGTATCCATACACTATGC
1 AGTGTATCCATACACTCTGC
2436 A
1 A
2437 TCGATGCACC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
20 34 0.97
21 1 0.03
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.31
Consensus pattern (20 bp):
AGTGTATCCATACACTCTGC
Found at i:4833 original size:3 final size:3
Alignment explanation
Indices: 4819--4854 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
4809 TAAATTAAAG
*
4819 TAA TAG TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
4855 AACACTGGGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:13920 original size:18 final size:18
Alignment explanation
Indices: 13899--13942 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
13889 CACGTGTCGA
13899 TTGGGTGGATGATATTTG
1 TTGGGTGGATGATATTTG
*
13917 TTGGGTGGCTGATATTTG
1 TTGGGTGGATGATATTTG
13935 TTGGGTGG
1 TTGGGTGG
13943 TGGTGGCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.11, C:0.02, G:0.43, T:0.43
Consensus pattern (18 bp):
TTGGGTGGATGATATTTG
Found at i:14216 original size:3 final size:3
Alignment explanation
Indices: 14208--14255 Score: 60
Period size: 3 Copynumber: 15.7 Consensus size: 3
14198 TAAATTAAAG
* * *
14208 TAA TAA TAA TAA TAA TAA TAA TAA CAA CAA CAA TAA TAAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA
14254 TA
1 TA
14256 CCCATGGCAA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
3 39 0.93
4 3 0.07
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (3 bp):
TAA
Found at i:16309 original size:3 final size:3
Alignment explanation
Indices: 16303--16364 Score: 72
Period size: 3 Copynumber: 20.7 Consensus size: 3
16293 ATTTTTGTTT
** *
16303 TTA TTA TTA TTA TTA AAA TTA TTA TTA TTA TTA TTAA ATA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA
*
16349 -TA TTA TAA TTA TTA TT
1 TTA TTA TTA TTA TTA TT
16365 TACAAACAAT
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
2 2 0.04
3 45 0.92
4 2 0.04
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:16329 original size:21 final size:22
Alignment explanation
Indices: 16303--16359 Score: 91
Period size: 21 Copynumber: 2.7 Consensus size: 22
16293 ATTTTTGTTT
16303 TTATTATTATTATTAAA-ATTA
1 TTATTATTATTATTAAATATTA
16324 TTATTATTATTATTAAATATTA
1 TTATTATTATTATTAAATATTA
*
16346 TTA-TATTATAATTA
1 TTATTATTATTATTA
16360 TTATTTACAA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
21 27 0.79
22 7 0.21
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (22 bp):
TTATTATTATTATTAAATATTA
Found at i:16403 original size:26 final size:26
Alignment explanation
Indices: 16374--16425 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16364 TTACAAACAA
* *
16374 TTACAAACAAAACTGGACCGGCCCAG
1 TTACAAACAAAACAGAACCGGCCCAG
16400 TTACAAACAAAACAGAACCGGCCCAG
1 TTACAAACAAAACAGAACCGGCCCAG
16426 ACCAACCAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.42, C:0.31, G:0.17, T:0.10
Consensus pattern (26 bp):
TTACAAACAAAACAGAACCGGCCCAG
Found at i:20867 original size:14 final size:16
Alignment explanation
Indices: 20840--20871 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
20830 GTATTCTTAC
20840 TTTTTGCATCTTTGCA
1 TTTTTGCATCTTTGCA
20856 TTTTT-CAT-TTTGCA
1 TTTTTGCATCTTTGCA
20870 TT
1 TT
20872 CATACTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 3 0.19
16 5 0.31
ACGTcount: A:0.12, C:0.16, G:0.09, T:0.62
Consensus pattern (16 bp):
TTTTTGCATCTTTGCA
Found at i:23136 original size:2 final size:2
Alignment explanation
Indices: 23129--23158 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
23119 TTTATCCTTA
23129 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23159 CCTTTGTTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:23498 original size:17 final size:16
Alignment explanation
Indices: 23478--23514 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
23468 AAAAGGGGAA
23478 AAAAAGAAAAAAAAAGG
1 AAAAAG-AAAAAAAAGG
*
23495 AAAATGAAAAAAAAGG
1 AAAAAGAAAAAAAAGG
23511 AAAA
1 AAAA
23515 TTGAATCAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.03
Consensus pattern (16 bp):
AAAAAGAAAAAAAAGG
Found at i:23519 original size:17 final size:16
Alignment explanation
Indices: 23485--23515 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
23475 GAAAAAAAGA
23485 AAAAAAAAGGAAAATG
1 AAAAAAAAGGAAAATG
23501 AAAAAAAAGGAAAAT
1 AAAAAAAAGGAAAAT
23516 TGAATCAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.16, T:0.06
Consensus pattern (16 bp):
AAAAAAAAGGAAAATG
Found at i:26000 original size:115 final size:115
Alignment explanation
Indices: 25749--25977 Score: 388
Period size: 115 Copynumber: 2.0 Consensus size: 115
25739 AAGTGCCATG
*
25749 TGCTCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGTGTTATCTGATC
1 TGCTCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
* * * * *
25814 TGGTTTGGTATGAACCTCAAAAACCAATCATTGGATTTGAAAGATGAATT
66 TGGTTCGGTAGGAACCACAAAAACCAATCATTGGAATTAAAAGATGAATT
25864 TGCTCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
1 TGCTCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
*
25929 TGGTTCGGTAGGAACCAC-AGAACCAATCATTGGAATTAAAAGATGAATT
66 TGGTTCGGTAGGAACCACAAAAACCAATCATTGGAATTAAAAGATGAATT
25978 GCATGATTGT
Statistics
Matches: 107, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
114 28 0.26
115 79 0.74
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (115 bp):
TGCTCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
TGGTTCGGTAGGAACCACAAAAACCAATCATTGGAATTAAAAGATGAATT
Found at i:28498 original size:22 final size:22
Alignment explanation
Indices: 28469--28523 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
28459 ATCTACACTC
28469 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
*
28491 TTTAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
28513 TTCAAAGATGA
1 TTCAAAGATGA
28524 AATCTTTATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.40
Consensus pattern (22 bp):
TTCAAAGATGATAGATTCTCTT
Found at i:29347 original size:166 final size:169
Alignment explanation
Indices: 29038--29365 Score: 545
Period size: 167 Copynumber: 2.0 Consensus size: 169
29028 AAAATGAGCA
29038 TTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTTCAAAAAAACATAATGAGAAAAC
1 TTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTTCAAAAAAACATAATGAGAAAAC
* * ** *
29103 GATTTTCATAGTTTCTCATTTTATCTTTTCTAAAATGAAATTGTTCAAAAGTAAGAAAACGATTT
66 GACTTCCATAGTTTCTCATTCAATATTTTCTAAAATGAAATTGTTCAAAAGTAAGAAAACGATTT
*
29168 TCTTAGTTTTTTTTACTTAGTAAACTATTTCCAACAACC
131 CCTTAGTTTTTTTTACTTAGTAAACTATTTCCAACAACC
**
29207 TTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTT-TGAAAAA-A-AATGAGAAAAC
1 TTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTTCAAAAAAACATAATGAGAAAAC
*
29269 GACTTCCATAGTTTCTCATTCAATATTTTCTAAAAATGAAATTGTTGAAAAGTAAGAAAACGATT
66 GACTTCCATAGTTTCTCATTCAATATTTTCT-AAAATGAAATTGTTCAAAAGTAAGAAAACGATT
29334 TCCTTAGTTTTTTTTACTTAGTAAACTATTTC
130 TCCTTAGTTTTTTTTACTTAGTAAACTATTTC
29366 TCACATCTGT
Statistics
Matches: 149, Mismatches: 9, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
166 37 0.25
167 64 0.43
168 5 0.03
169 43 0.29
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (169 bp):
TTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTTCAAAAAAACATAATGAGAAAAC
GACTTCCATAGTTTCTCATTCAATATTTTCTAAAATGAAATTGTTCAAAAGTAAGAAAACGATTT
CCTTAGTTTTTTTTACTTAGTAAACTATTTCCAACAACC
Found at i:29580 original size:183 final size:185
Alignment explanation
Indices: 29242--29611 Score: 627
Period size: 183 Copynumber: 2.0 Consensus size: 185
29232 CCAATCAACA
*
29242 TGTTATTTTGAAAAAAAATGAGAAAACGACTTCCATAGTTTCTCATTCAATATTTTCTAAAAATG
1 TGTTATTATGAAAAAAAATGAGAAAACGACTTCCATAGTTTCTCATTCAATATTTTCTAAAAATG
* *
29307 AAATTGTTGAAAAGTAAGAAAACGATTTCCTTAGTTTTTTTTACTTAGTAAACTATTTCTCACAT
66 AAATTGTTGAAAAGTAAGAAAACAATTTCCTTAG-TTTTTTTACTTAGTAAACTATTTCCCACAT
29372 CTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGT
130 CTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGT
* * ** *
29428 TGTTATTATGAAAAATAATGAGAAAACGATTTCCATAGTTTCTCATTTTATCTTTTCT-AAAATG
1 TGTTATTATGAAAAAAAATGAGAAAACGACTTCCATAGTTTCTCATTCAATATTTTCTAAAAATG
*
29492 AAATTGTTGAAAAGTAAGAAAGCAATTTCCTTAG-TTTTTTACTTAGTAAACTATTTCCCACATC
66 AAATTGTTGAAAAGTAAGAAAACAATTTCCTTAGTTTTTTTACTTAGTAAACTATTTCCCACATC
*
29556 TGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTTGGGAGCTTTTTGATGT
131 TGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGT
29611 T
1 T
29612 TTCAAAGCCT
Statistics
Matches: 174, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
183 84 0.48
185 38 0.22
186 52 0.30
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.38
Consensus pattern (185 bp):
TGTTATTATGAAAAAAAATGAGAAAACGACTTCCATAGTTTCTCATTCAATATTTTCTAAAAATG
AAATTGTTGAAAAGTAAGAAAACAATTTCCTTAGTTTTTTTACTTAGTAAACTATTTCCCACATC
TGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGT
Found at i:29639 original size:76 final size:76
Alignment explanation
Indices: 29552--29733 Score: 328
Period size: 76 Copynumber: 2.4 Consensus size: 76
29542 CTATTTCCCA
*
29552 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTTGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
29617 AGCCTTAGGGT
66 AACCTTAGGGT
29628 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
29693 AACCTTATGGT
66 AACCTTAGGGT
*
29704 CATTTGTAAGTCCTGCAGTGCATGATGTTT
1 CATCTGTAAGTCCTGCAGTGCATGATGTTT
29734 TTAAGACCTC
Statistics
Matches: 102, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
76 102 1.00
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.36
Consensus pattern (76 bp):
CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AACCTTAGGGT
Found at i:29901 original size:3 final size:3
Alignment explanation
Indices: 29895--29959 Score: 78
Period size: 3 Copynumber: 21.7 Consensus size: 3
29885 ATTTTTGTTT
** *
29895 TTA TTA TTA TTA TTA AAA TTA TTA TTA TTA TTA TTAA ATA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA
*
29941 TTA -TA TTA TAA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TT
29960 TACAAACAGT
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
2 2 0.04
3 48 0.92
4 2 0.04
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:30002 original size:26 final size:26
Alignment explanation
Indices: 29966--30020 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
29956 TATTTACAAA
* *
29966 CAGTTACAAACAAAACTGGACCGGCC
1 CAGTTACAAACAAAACAGAACCGGCC
29992 CAGTTACAAACAAAACAGAACCGGCC
1 CAGTTACAAACAAAACAGAACCGGCC
30018 CAG
1 CAG
30021 ACCAACCAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.42, C:0.31, G:0.18, T:0.09
Consensus pattern (26 bp):
CAGTTACAAACAAAACAGAACCGGCC
Found at i:30991 original size:5 final size:5
Alignment explanation
Indices: 30981--31006 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
30971 TAGTCTTTAC
30981 ATTTT ATTTT ATTTT ATTTT ATTTT A
1 ATTTT ATTTT ATTTT ATTTT ATTTT A
31007 GTCCTTATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (5 bp):
ATTTT
Found at i:36077 original size:27 final size:27
Alignment explanation
Indices: 36055--36129 Score: 141
Period size: 27 Copynumber: 2.8 Consensus size: 27
36045 CTTGATGTTG
*
36055 TGGACTTTCAAGTTCAAAGTGATGCTA
1 TGGAGTTTCAAGTTCAAAGTGATGCTA
36082 TGGAGTTTCAAGTTCAAAGTGATGCTA
1 TGGAGTTTCAAGTTCAAAGTGATGCTA
36109 TGGAGTTTCAAGTTCAAAGTG
1 TGGAGTTTCAAGTTCAAAGTG
36130 GTGATGGCGG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
TGGAGTTTCAAGTTCAAAGTGATGCTA
Found at i:37970 original size:16 final size:15
Alignment explanation
Indices: 37934--37989 Score: 58
Period size: 16 Copynumber: 3.5 Consensus size: 15
37924 TTATAAATTT
* *
37934 AAAAATAATTATAAA
1 AAAAATAATGATATA
37949 ATAAAATTAATGATATTA
1 A-AAAA-TAATGATA-TA
37967 AAAAATAATGATATA
1 AAAAATAATGATATA
*
37982 AAATATAA
1 AAAAATAA
37990 AAATATACTT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
15 10 0.29
16 12 0.34
17 11 0.31
18 2 0.06
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (15 bp):
AAAAATAATGATATA
Found at i:38133 original size:24 final size:25
Alignment explanation
Indices: 38086--38134 Score: 64
Period size: 27 Copynumber: 1.9 Consensus size: 25
38076 TTATTACAAA
*
38086 ATAATGTTAGTATTTTTTTTGAGTGAT
1 ATAATGTTAGTA--TTTTTCGAGTGAT
38113 ATAATGTTAGTA-TTTTCGAGTG
1 ATAATGTTAGTATTTTTCGAGTG
38135 TGATTAGGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 9 0.43
27 12 0.57
ACGTcount: A:0.27, C:0.02, G:0.20, T:0.51
Consensus pattern (25 bp):
ATAATGTTAGTATTTTTCGAGTGAT
Found at i:39119 original size:29 final size:31
Alignment explanation
Indices: 39087--39152 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 31
39077 AAAATATAGT
*
39087 ATTATAAT-A-TAAACACTTAAAAATATTAA
1 ATTATAATAATTAAACACTTAAAAATACTAA
* *
39116 ATTAT-ATAATTTAACATTTAAAAATACTAA
1 ATTATAATAATTAAACACTTAAAAATACTAA
39146 A-TATAAT
1 ATTATAAT
39153 TTATTTTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
28 2 0.06
29 9 0.29
30 20 0.65
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (31 bp):
ATTATAATAATTAAACACTTAAAAATACTAA
Found at i:39139 original size:30 final size:31
Alignment explanation
Indices: 39089--39147 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
39079 AATATAGTAT
*
39089 TATAATATAAACACTTAAAAATATTAAATTA
1 TATAATATAAACACTTAAAAATACTAAATTA
* *
39120 TATAAT-TTAACATTTAAAAATACTAAAT
1 TATAATATAAACACTTAAAAATACTAAAT
39148 ATAATTTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 19 0.76
31 6 0.24
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (31 bp):
TATAATATAAACACTTAAAAATACTAAATTA
Found at i:40148 original size:30 final size:30
Alignment explanation
Indices: 40109--40476 Score: 245
Period size: 30 Copynumber: 12.6 Consensus size: 30
40099 TTAATTGTAC
*
40109 ATCTTAACATTAAAAATATATTTTATTTTT
1 ATCTTAACATTAAAAATATATTTTATTCTT
* *
40139 ATATTAACA-TATTAAATATATTTTATTCTT
1 ATCTTAACATTA-AAAATATATTTTATTCTT
* ** *
40169 GTAATAAC-CTAAAAATATATTTTATTCTT
1 ATCTTAACATTAAAAATATATTTTATTCTT
* *
40198 ATTTTAAC-TTAAAAA-ATATATTTAGTCTTT
1 ATCTTAACATTAAAAATATAT-TTTATTC-TT
*
40228 ATTTTAAC-TTAAAAATATATTTTATTCTT
1 ATCTTAACATTAAAAATATATTTTATTCTT
* * * *
40257 ATCTTAAC-TTATTACATAAATTATATTCTT
1 ATCTTAACATTA-AAAATATATTTTATTCTT
* * *
40287 AACTTAA-ATTATTAAATATATTCTATTCTT
1 ATCTTAACATTA-AAAATATATTTTATTCTT
* * * *
40317 ACCTTAA-ATTATTAAATATAATTAATTCTT
1 ATCTTAACATTA-AAAATATATTTTATTCTT
* *
40347 ATTTTAAC-TTAAAACATA-CTTTTATTCTT
1 ATCTTAACATTAAAA-ATATATTTTATTCTT
* * *
40376 ATTTTAAC-TTAAAAATGTA-TTT-TTATT
1 ATCTTAACATTAAAAATATATTTTATTCTT
*
40403 -TC--AACA--AAAAATATATTTTATTTTT
1 ATCTTAACATTAAAAATATATTTTATTCTT
* *
40428 ATCTTAACTATAAAAAATATATTATATT-TGT
1 ATCTTAAC-ATTAAAAATATATTTTATTCT-T
*
40459 ATCTTAA-ATTTAAAATAT
1 ATCTTAACATTAAAAATAT
40477 TATCAGAATA
Statistics
Matches: 278, Mismatches: 40, Indels: 41
0.77 0.11 0.11
Matches are distributed among these distances:
23 8 0.03
24 6 0.02
25 4 0.01
26 3 0.01
27 4 0.01
28 12 0.04
29 82 0.29
30 132 0.47
31 27 0.10
ACGTcount: A:0.40, C:0.08, G:0.01, T:0.50
Consensus pattern (30 bp):
ATCTTAACATTAAAAATATATTTTATTCTT
Found at i:40190 original size:59 final size:59
Alignment explanation
Indices: 40119--40386 Score: 213
Period size: 59 Copynumber: 4.5 Consensus size: 59
40109 ATCTTAACAT
* *
40119 TAAAAATATATTTTATTTTTATATTAACATATTAAATATATTTTATTCTTGTA-ATAACC
1 TAAAAATATATTTTATTCTTATATTAACTTATTAAATATATTTTATTCTT-TATATAACC
* ** * * *
40178 TAAAAATATATTTTATTCTTATTTTAACTTAAAAAATATA-TTTAGTCTTTATTTTAACT
1 TAAAAATATATTTTATTCTTATATTAACTTATTAAATATATTTTATTCTTTA-TATAACC
* * * * * **
40237 TAAAAATATATTTTATTCTTATCTTAACTTATTACATAAATTATATTCTTAACT-TAAAT
1 TAAAAATATATTTTATTCTTATATTAACTTATTAAATATATTTTATTCTTTA-TATAACC
* * ** * * * * *
40296 TATTAAATATATTCTATTCTTACCTTAAATTATTAAATATAATTAATTC-TTATTTTAACT
1 TA-AAAATATATTTTATTCTTATATTAACTTATTAAATATATTTTATTCTTTA-TATAACC
* *
40356 TAAAACATA-CTTTTATTCTTATTTTAACTTA
1 TAAAA-ATATATTTTATTCTTATATTAACTTA
40387 AAAATGTATT
Statistics
Matches: 167, Mismatches: 36, Indels: 12
0.78 0.17 0.06
Matches are distributed among these distances:
57 2 0.01
58 8 0.05
59 102 0.61
60 55 0.33
ACGTcount: A:0.39, C:0.09, G:0.01, T:0.51
Consensus pattern (59 bp):
TAAAAATATATTTTATTCTTATATTAACTTATTAAATATATTTTATTCTTTATATAACC
Found at i:40350 original size:119 final size:118
Alignment explanation
Indices: 40112--40386 Score: 297
Period size: 119 Copynumber: 2.3 Consensus size: 118
40102 ATTGTACATC
* * * * *
40112 TTAACATTAAAAATATATTTTATTTTTATATTAACATATTAAATATATTTTATTCTTGTAATAAC
1 TTAAC-TTAAAAATATATTTTATTCTTATATTAACTTATTAAATAAATTATATTCTTGTAATAAA
* ** * *
40177 CTAAAAATATATTTTATTCTTATTTTAACTTAAAAAATATATTTAGTCTTTATT
65 CTAAAAATATATTCTATTCTTACCTTAAATTAAAAAATATATTAAGTCTTTATT
* *
40231 TTAACTTAAAAATATATTTTATTCTTATCTTAACTTATTACATAAATTATATTC-T-TAACTTAA
1 TTAACTTAAAAATATATTTTATTCTTATATTAACTTATTAAATAAATTATATTCTTGTAA--TAA
* * ** *
40294 ATTATTAAATATATTCTATTCTTACCTTAAATTATTAAATATAATTAATTC-TTATT
64 ACTA-AAAATATATTCTATTCTTACCTTAAATTAAAAAATAT-ATTAAGTCTTTATT
* *
40350 TTAACTTAAAACATA-CTTTTATTCTTATTTTAACTTA
1 TTAACTTAAAA-ATATATTTTATTCTTATATTAACTTA
40387 AAAATGTATT
Statistics
Matches: 132, Mismatches: 19, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
116 3 0.02
117 1 0.01
118 48 0.36
119 71 0.54
120 9 0.07
ACGTcount: A:0.39, C:0.09, G:0.01, T:0.51
Consensus pattern (118 bp):
TTAACTTAAAAATATATTTTATTCTTATATTAACTTATTAAATAAATTATATTCTTGTAATAAAC
TAAAAATATATTCTATTCTTACCTTAAATTAAAAAATATATTAAGTCTTTATT
Found at i:40372 original size:178 final size:171
Alignment explanation
Indices: 40122--40436 Score: 400
Period size: 178 Copynumber: 1.8 Consensus size: 171
40112 TTAACATTAA
* * * * * *
40122 AAATATATTTTATTTTTATATTAACATATTAAATATATTTTATTCTTGTAATAACCTAAAAATAT
1 AAATATATTCTATTCTTACATTAACATATTAAATATAATTAATTCTTATAATAACCTAAAAATAT
* *
40187 ATTTTATTCTTATTTTAACTTAAAAAATATATTTAGTCTTTATTTTAACTTAAAAATATATTTTA
66 ATTTTATTCTTATTTTAACTT-AAAAATATA--T--T-TTTATTTCAAC-AAAAAATATATTTTA
40252 TTCTTATCTTAACTTATTACATAAATTATATTCTTAACTTAAATTATT
124 TTCTTATCTTAACTTATTACATAAATTATATTCTTAACTTAAATTATT
* ** *
40300 AAATATATTCTATTCTTACCTTAA-ATTATTAAATATAATTAATTCTTATTTTAACTTAAAACAT
1 AAATATATTCTATTCTTACATTAACA-TATTAAATATAATTAATTCTTATAATAACCTAAAA-AT
* * *
40364 A-CTTTTATTCTTATTTTAACTTAAAAATGTATTTTTATTTCAACAAAAAATATATTTTATTTTT
64 ATATTTTATTCTTATTTTAACTTAAAAATATATTTTTATTTCAACAAAAAATATATTTTATTCTT
40428 ATCTTAACT
129 ATCTTAACT
40437 ATAAAAAATA
Statistics
Matches: 120, Mismatches: 15, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
171 27 0.22
172 10 0.08
173 1 0.01
175 1 0.01
177 9 0.08
178 69 0.57
179 3 0.03
ACGTcount: A:0.39, C:0.09, G:0.01, T:0.51
Consensus pattern (171 bp):
AAATATATTCTATTCTTACATTAACATATTAAATATAATTAATTCTTATAATAACCTAAAAATAT
ATTTTATTCTTATTTTAACTTAAAAATATATTTTTATTTCAACAAAAAATATATTTTATTCTTAT
CTTAACTTATTACATAAATTATATTCTTAACTTAAATTATT
Found at i:40396 original size:24 final size:24
Alignment explanation
Indices: 40341--40426 Score: 77
Period size: 29 Copynumber: 3.5 Consensus size: 24
40331 AATATAATTA
40341 ATTCTTATTTTAACTTAAAACATACTTTT
1 ATTCTTATTTTAACTTAAAA-ATA----T
*
40370 ATTCTTATTTTAACTTAAAAATGT
1 ATTCTTATTTTAACTTAAAAATAT
* * *
40394 ATTTTTATTTCAAC-AAAAAATAT
1 ATTCTTATTTTAACTTAAAAATAT
40417 ATT-TTATTTT
1 ATTCTTATTTT
40427 TATCTTAACT
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
22 6 0.12
23 10 0.20
24 13 0.25
28 2 0.04
29 20 0.39
ACGTcount: A:0.37, C:0.09, G:0.01, T:0.52
Consensus pattern (24 bp):
ATTCTTATTTTAACTTAAAAATAT
Found at i:40473 original size:31 final size:31
Alignment explanation
Indices: 40408--40473 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
40398 TTATTTCAAC
* * *
40408 AAAAAATATATTTTATTTTTATCTTAACTAT
1 AAAAAATATATTATATTTGTATCTTAAATAT
*
40439 AAAAAATATATTATATTTGTATCTTAAATTT
1 AAAAAATATATTATATTTGTATCTTAAATAT
40470 AAAA
1 AAAA
40474 TATTATCAGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.47
Consensus pattern (31 bp):
AAAAAATATATTATATTTGTATCTTAAATAT
Found at i:40554 original size:18 final size:18
Alignment explanation
Indices: 40533--40579 Score: 85
Period size: 18 Copynumber: 2.6 Consensus size: 18
40523 AGTAAATATA
40533 ATATTAAAATATATTTTC
1 ATATTAAAATATATTTTC
40551 ATATTAAAATATATTTTC
1 ATATTAAAATATATTTTC
*
40569 AAATTAAAATA
1 ATATTAAAATA
40580 AGAATAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (18 bp):
ATATTAAAATATATTTTC
Found at i:40609 original size:27 final size:29
Alignment explanation
Indices: 40555--40622 Score: 86
Period size: 27 Copynumber: 2.4 Consensus size: 29
40545 ATTTTCATAT
40555 TAAAATATATTTTCAAATTAAAATAAGAA
1 TAAAATATATTTTCAAATTAAAATAAGAA
** * *
40584 TAAAATATATTTT-AGGTTCAAA-AAGAG
1 TAAAATATATTTTCAAATTAAAATAAGAA
40611 TAAAATATATTT
1 TAAAATATATTT
40623 AATAAGTTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 16 0.46
28 6 0.17
29 13 0.37
ACGTcount: A:0.53, C:0.03, G:0.07, T:0.37
Consensus pattern (29 bp):
TAAAATATATTTTCAAATTAAAATAAGAA
Found at i:40634 original size:25 final size:26
Alignment explanation
Indices: 40606--40665 Score: 70
Period size: 24 Copynumber: 2.3 Consensus size: 26
40596 TAGGTTCAAA
*
40606 AAGAGTAAAATATATTTAATAA-GTT
1 AAGAGTAAAAAATATTTAATAATGTT
**
40631 AAGA-TAAAAAATATTTTTTAATGTT
1 AAGAGTAAAAAATATTTAATAATGTT
40656 AAGATGTAAA
1 AAGA-GTAAA
40666 GTTAATTTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 14 0.48
25 11 0.38
27 4 0.14
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.37
Consensus pattern (26 bp):
AAGAGTAAAAAATATTTAATAATGTT
Found at i:45823 original size:2 final size:2
Alignment explanation
Indices: 45816--45844 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
45806 TAGCCAATTG
45816 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
45845 GCTTAAGCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:47600 original size:14 final size:14
Alignment explanation
Indices: 47583--47611 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
47573 AAAAACATCA
47583 AATTTAGATTTTCG
1 AATTTAGATTTTCG
47597 AATTTAGATTTTCG
1 AATTTAGATTTTCG
47611 A
1 A
47612 TTTTTTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.07, G:0.14, T:0.48
Consensus pattern (14 bp):
AATTTAGATTTTCG
Found at i:48032 original size:20 final size:20
Alignment explanation
Indices: 48007--48058 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
47997 ACCCGACAGA
*
48007 TGCATCGATGCATGGCCTTG
1 TGCATCGATGCATGCCCTTG
48027 TGCATCGATGCATGCCCTTG
1 TGCATCGATGCATGCCCTTG
*
48047 TGCAACGATGCA
1 TGCATCGATGCA
48059 CATTCAAGGC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.19, C:0.27, G:0.27, T:0.27
Consensus pattern (20 bp):
TGCATCGATGCATGCCCTTG
Found at i:48081 original size:23 final size:22
Alignment explanation
Indices: 48046--48127 Score: 85
Period size: 23 Copynumber: 3.6 Consensus size: 22
48036 GCATGCCCTT
*
48046 GTGCAACGATGCACATTCAAGG
1 GTGCATCGATGCACATTCAAGG
* * *
48068 CGTGCATCGGTGCACCTT-AATG
1 -GTGCATCGATGCACATTCAAGG
*
48090 GTGTATCGATGCACATTCAAAGG
1 GTGCATCGATGCACATTC-AAGG
48113 GATGCATCGATGCAC
1 G-TGCATCGATGCAC
48128 TGTTAAGTGT
Statistics
Matches: 47, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
21 14 0.30
22 3 0.06
23 18 0.38
24 12 0.26
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (22 bp):
GTGCATCGATGCACATTCAAGG
Found at i:48103 original size:44 final size:44
Alignment explanation
Indices: 48052--48146 Score: 124
Period size: 44 Copynumber: 2.2 Consensus size: 44
48042 CCTTGTGCAA
*
48052 CGATGCACATTC-AAGGCG-TGCATCGGTGCAC-CTTAATGGTGTAT
1 CGATGCACATTCAAAGG-GATGCATCGATGCACTCTTAA--GTGTAT
*
48096 CGATGCACATTCAAAGGGATGCATCGATGCACTGTTAAGTGTAT
1 CGATGCACATTCAAAGGGATGCATCGATGCACTCTTAAGTGTAT
48140 CGATGCA
1 CGATGCA
48147 TGAAGCACAA
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
44 26 0.57
45 16 0.35
46 4 0.09
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (44 bp):
CGATGCACATTCAAAGGGATGCATCGATGCACTCTTAAGTGTAT
Found at i:57179 original size:2 final size:2
Alignment explanation
Indices: 57172--57225 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
57162 AATACTGTCA
57172 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
57214 AT AT AT AT AT AT
1 AT AT AT AT AT AT
57226 TGTACTTTTT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:58256 original size:21 final size:21
Alignment explanation
Indices: 58232--58277 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
58222 TGAATACGAG
*
58232 GAGACATAATATTAATATAAA
1 GAGACACAATATTAATATAAA
* * *
58253 GAGACACGATGTTAATATGAA
1 GAGACACAATATTAATATAAA
58274 GAGA
1 GAGA
58278 TAATTTTTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.50, C:0.07, G:0.20, T:0.24
Consensus pattern (21 bp):
GAGACACAATATTAATATAAA
Found at i:61329 original size:35 final size:35
Alignment explanation
Indices: 61283--61358 Score: 116
Period size: 35 Copynumber: 2.2 Consensus size: 35
61273 AAAACAGTCC
* *
61283 TCAATTTCATTCTAAACCCCAATTTCCAAAGTAAT
1 TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
*
61318 TCAATTTCATTCTAAACCCTAAATTCCAAAATAAT
1 TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
*
61353 TTAATT
1 TCAATT
61359 AAATTCAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.39, C:0.22, G:0.01, T:0.37
Consensus pattern (35 bp):
TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
Found at i:61908 original size:130 final size:130
Alignment explanation
Indices: 61755--62002 Score: 415
Period size: 130 Copynumber: 1.9 Consensus size: 130
61745 TATTTATATA
* **
61755 ATCAATTTGGTCCTAAATTAAATAGAATTTAATAAATTAATCATTTAATTAGGATCTGACATGTG
1 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTG
* *
61820 TTAGCACATGATCATGACACGTGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
66 TTAACACATGATCATGACACATGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
*
61885 ATCAGTTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTG
1 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTG
* * *
61950 TTAACACATGATCATGATATATGTTATTGGTGACACATGTCACCACCTAATTA
66 TTAACACATGATCATGACACATGTCATTGGTGACACATGTCACCACCTAATTA
62003 GAAGAAAATT
Statistics
Matches: 109, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
130 109 1.00
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.35
Consensus pattern (130 bp):
ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTG
TTAACACATGATCATGACACATGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
Found at i:62033 original size:130 final size:129
Alignment explanation
Indices: 61769--62033 Score: 300
Period size: 130 Copynumber: 2.0 Consensus size: 129
61759 ATTTGGTCCT
* ** *
61769 AAATTAAATAGAATTTAATAAATTAATCATTTAATTAGGATCTGACATGTGTTAGCACATGATCA
1 AAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTGTTAACACATGATCA
* *** * * ***** *
61834 TGACACGTGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCTATCAGTTTGGTCCT
66 TGACACATGTCATTGGTGACACATGTCACCACCTAATTAAGAAAATAAGCTATCAAAGAAGT-CA
61899 AAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTGTTAACACATGATCA
1 AAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTGTTAACACATGATCA
* * * *
61964 TGATATATGTTATTGGTGACACATGTCACCACCTAATTAGAAGAAAATTAAGTTA-CAAAGAAGT
66 TGACACATGTCATTGGTGACACATGTCACCACCTAATT--AAGAAAA-TAAGCTATCAAAGAAGT
62028 -A
128 CA
62029 AAATT
1 AAATT
62034 TGGGTCTTGG
Statistics
Matches: 112, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
130 100 0.89
132 7 0.06
133 5 0.04
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (129 bp):
AAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTGTTAACACATGATCA
TGACACATGTCATTGGTGACACATGTCACCACCTAATTAAGAAAATAAGCTATCAAAGAAGTCA
Found at i:62361 original size:28 final size:27
Alignment explanation
Indices: 62330--62392 Score: 63
Period size: 28 Copynumber: 2.3 Consensus size: 27
62320 AGTTGATACA
*
62330 ATATTTTAAAAGAATAAATTTAAGATTT
1 ATATTTTAAAA-AATAAATTTAAGAATT
** * *
62358 ATATATTTTTAAACTAAATTTAATAATT
1 ATAT-TTTAAAAAATAAATTTAAGAATT
62386 ATATTTT
1 ATATTTT
62393 TCATATTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
27 3 0.10
28 21 0.72
29 5 0.17
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (27 bp):
ATATTTTAAAAAATAAATTTAAGAATT
Found at i:62493 original size:16 final size:18
Alignment explanation
Indices: 62472--62505 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
62462 ATTTCTTATT
62472 AAAAATA-AAAT-ATTCA
1 AAAAATATAAATGATTCA
62488 AAAAATATAAATGATTCA
1 AAAAATATAAATGATTCA
62506 TACATTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (18 bp):
AAAAATATAAATGATTCA
Found at i:67775 original size:21 final size:21
Alignment explanation
Indices: 67721--67775 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
67711 TTACACTGAG
67721 TGTACCGATACACTTTGAAGA
1 TGTACCGATACACTTTGAAGA
**
67742 TGTACTAATACACTTTGAAGA
1 TGTACCGATACACTTTGAAGA
*
67763 TGTACCGACACAC
1 TGTACCGATACAC
67776 CTACACTCCC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (21 bp):
TGTACCGATACACTTTGAAGA
Found at i:75559 original size:20 final size:20
Alignment explanation
Indices: 75506--75562 Score: 96
Period size: 20 Copynumber: 2.9 Consensus size: 20
75496 AGAATAAAGT
* *
75506 AAGGGGGAGTAATATTTCAT
1 AAGGGGGAGTAATTTTTCAA
75526 AAGGGGGAGTAATTTTTCAA
1 AAGGGGGAGTAATTTTTCAA
75546 AAGGGGGAGTAATTTTT
1 AAGGGGGAGTAATTTTT
75563 TTAAAATTCG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.33, C:0.04, G:0.32, T:0.32
Consensus pattern (20 bp):
AAGGGGGAGTAATTTTTCAA
Found at i:79695 original size:21 final size:21
Alignment explanation
Indices: 79669--79709 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
79659 ATTTAATATA
79669 AATAAATACTA-AATAATATTT
1 AATAAA-ACTATAATAATATTT
*
79690 AATAAAACTATTATAATATT
1 AATAAAACTATAATAATATT
79710 ATATTATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (21 bp):
AATAAAACTATAATAATATTT
Found at i:80649 original size:8 final size:8
Alignment explanation
Indices: 80636--80690 Score: 60
Period size: 8 Copynumber: 6.8 Consensus size: 8
80626 GTAATATTTT
80636 TAATATAA
1 TAATATAA
80644 TAATATAA
1 TAATATAA
80652 TAA-A-AA
1 TAATATAA
*
80658 TAATATAG
1 TAATATAA
80666 TAATATAGTAA
1 T-A-ATA-TAA
80677 TAATATAA
1 TAATATAA
80685 TAATAT
1 TAATAT
80691 CAACTCGGAC
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
6 5 0.12
7 2 0.05
8 22 0.55
9 4 0.10
10 4 0.10
11 3 0.08
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (8 bp):
TAATATAA
Found at i:80654 original size:11 final size:11
Alignment explanation
Indices: 80640--80689 Score: 59
Period size: 11 Copynumber: 4.5 Consensus size: 11
80630 TATTTTTAAT
80640 ATAATAATATA
1 ATAATAATATA
80651 ATAA-AA-ATA
1 ATAATAATATA
80660 ATATAGTAATATA
1 ATA-A-TAATATA
*
80673 GTAATAATATA
1 ATAATAATATA
80684 ATAATA
1 ATAATA
80690 TCAACTCGGA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
9 6 0.18
10 3 0.09
11 16 0.48
12 3 0.09
13 5 0.15
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (11 bp):
ATAATAATATA
Found at i:80997 original size:20 final size:20
Alignment explanation
Indices: 80959--80998 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
80949 ATCCTACACT
*
80959 GAGGTTTTACAGATGACCCG
1 GAGGTTTTACAAATGACCCG
*
80979 GAGGTTTTACAAATTACCCG
1 GAGGTTTTACAAATGACCCG
80999 AAGGATTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.28
Consensus pattern (20 bp):
GAGGTTTTACAAATGACCCG
Found at i:81007 original size:20 final size:20
Alignment explanation
Indices: 80964--81007 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
80954 ACACTGAGGT
* * *
80964 TTTACAGATGACCCGGAGGT
1 TTTACAAATGACCCGAAGGA
*
80984 TTTACAAATTACCCGAAGGA
1 TTTACAAATGACCCGAAGGA
81004 TTTA
1 TTTA
81008 ATTTTTTAGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (20 bp):
TTTACAAATGACCCGAAGGA
Found at i:81036 original size:119 final size:118
Alignment explanation
Indices: 80825--81112 Score: 432
Period size: 119 Copynumber: 2.4 Consensus size: 118
80815 AAAAAAAATA
* * * * * *
80825 AAAACATCATACCCGGAAGTTTTACAGATGACCCAAAGGCTTTACAAATCACCTGGAGGATTTAA
1 AAAACATCATA-CCTGAGGTTTTACAGATGACCCAAAGGTTTTACAAATTACCCGAAGGATTTAA
* *
80890 TTTTCTAGAACATTAAATGAGAAACTTTGAAAATCGCTTCGTCATTTTCATGCG
65 TTTTCTAGAACATTAAATGAGAAACTTTGAAAATCGCTTCCTCATTTTCATGAG
* **
80944 AAAACATCCTACACTGAGGTTTTACAGATGACCCGGAGGTTTTACAAATTACCCGAAGGATTTAA
1 AAAACATCATAC-CTGAGGTTTTACAGATGACCCAAAGGTTTTACAAATTACCCGAAGGATTTAA
*
81009 TTTTTTAGAACATTAAATGAGAAACTTTGAAAATCGCTTCCTCATTTTCATGAG
65 TTTTCTAGAACATTAAATGAGAAACTTTGAAAATCGCTTCCTCATTTTCATGAG
*
81063 AAAACATCTTACCTTGAGGTTTTACAGATGACCCAAAGGTTTTACAAATT
1 AAAACATCATACC-TGAGGTTTTACAGATGACCCAAAGGTTTTACAAATT
81113 CGTGGAAATA
Statistics
Matches: 152, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
118 2 0.01
119 150 0.99
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (118 bp):
AAAACATCATACCTGAGGTTTTACAGATGACCCAAAGGTTTTACAAATTACCCGAAGGATTTAAT
TTTCTAGAACATTAAATGAGAAACTTTGAAAATCGCTTCCTCATTTTCATGAG
Found at i:81732 original size:22 final size:22
Alignment explanation
Indices: 81697--81773 Score: 109
Period size: 22 Copynumber: 3.5 Consensus size: 22
81687 AATAAAGCTT
*
81697 TCATCTTTGGAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
* *
81719 TCATCCTTGAAAAGATAATCTA
1 TCATCTTTGAAAAGAGAATCTA
* *
81741 TCATTTTTGAAAATAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
81763 TCATCTTTGAA
1 TCATCTTTGAA
81774 GCATGTAGAT
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 47 1.00
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:88158 original size:21 final size:21
Alignment explanation
Indices: 88132--88172 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
88122 ATTTAATATA
88132 AATAAATACTA-AATAATATTT
1 AATAAA-ACTATAATAATATTT
*
88153 AATAAAACTATTATAATATT
1 AATAAAACTATAATAATATT
88173 ATATTATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (21 bp):
AATAAAACTATAATAATATTT
Found at i:88250 original size:30 final size:29
Alignment explanation
Indices: 88192--88250 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
88182 TCACATAAAT
*
88192 TAAATTATAAATTATGTAAAATAATAATCC
1 TAAAGTATAAATTA-GTAAAATAATAATCC
88222 TAAAGTATAAATTA-TAATAATAATTAATC
1 TAAAGTATAAATTAGTAA-AATAA-TAATC
88251 AATGATTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
28 3 0.12
29 5 0.19
30 18 0.69
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.37
Consensus pattern (29 bp):
TAAAGTATAAATTAGTAAAATAATAATCC
Found at i:89156 original size:3 final size:3
Alignment explanation
Indices: 89137--89219 Score: 68
Period size: 3 Copynumber: 28.7 Consensus size: 3
89127 GTAATATTTG
* * *
89137 TAA T-A TAA TATA TAA TAA TAT TAA TATA TAA GAA TAA T-A TAG TAA
1 TAA TAA TAA TA-A TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA
* *
89182 T-A TAG TAA TAA T-A TAA TAA TAG TAA TAA T-A TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
89220 TCAACTCGGA
Statistics
Matches: 63, Mismatches: 10, Indels: 14
0.72 0.11 0.16
Matches are distributed among these distances:
2 10 0.16
3 47 0.75
4 6 0.10
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:89165 original size:8 final size:7
Alignment explanation
Indices: 89139--89220 Score: 71
Period size: 8 Copynumber: 11.3 Consensus size: 7
89129 AATATTTGTA
89139 ATATAAT
1 ATATAAT
89146 ATATAAT
1 ATATAAT
89153 AATATTAAT
1 -ATA-TAAT
*
89162 ATATAAG
1 ATATAAT
89169 A-ATAAT
1 ATATAAT
89175 ATAGTAAT
1 ATA-TAAT
89183 ATAGTAAT
1 ATA-TAAT
89191 AATATAAT
1 -ATATAAT
*
89199 A-ATAGT
1 ATATAAT
89205 A-ATAAT
1 ATATAAT
89211 ATAATAAT
1 AT-ATAAT
89219 AT
1 AT
89221 CAACTCGGAC
Statistics
Matches: 64, Mismatches: 4, Indels: 13
0.79 0.05 0.16
Matches are distributed among these distances:
6 15 0.23
7 13 0.20
8 29 0.45
9 7 0.11
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (7 bp):
ATATAAT
Found at i:89174 original size:19 final size:18
Alignment explanation
Indices: 89137--89219 Score: 95
Period size: 19 Copynumber: 4.7 Consensus size: 18
89127 GTAATATTTG
89137 TAATATAAT-AT-A-TAA
1 TAATATAATAATAAGTAA
89152 TAATATTAATATATAAG-AA
1 TAATA-TAATA-ATAAGTAA
*
89171 TAATATAGTAATATAGTAA
1 TAATATAATAATA-AGTAA
89190 TAATATAATAAT-AGTAA
1 TAATATAATAATAAGTAA
89207 TAATATAATAATA
1 TAATATAATAATA
89220 TCAACTCGGA
Statistics
Matches: 58, Mismatches: 2, Indels: 13
0.79 0.03 0.18
Matches are distributed among these distances:
15 5 0.09
16 4 0.07
17 20 0.34
18 8 0.14
19 21 0.36
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (18 bp):
TAATATAATAATAAGTAA
Found at i:90429 original size:11 final size:11
Alignment explanation
Indices: 90415--90441 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
90405 GGGAGACAGA
90415 GAGAAACGGTG
1 GAGAAACGGTG
90426 GAGAAACGGTG
1 GAGAAACGGTG
90437 GAGAA
1 GAGAA
90442 GGGAAACAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.41, C:0.07, G:0.44, T:0.07
Consensus pattern (11 bp):
GAGAAACGGTG
Found at i:90850 original size:2 final size:2
Alignment explanation
Indices: 90843--90867 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
90833 TTTTATGGCT
90843 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
90868 TGATGGTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:91462 original size:60 final size:59
Alignment explanation
Indices: 91354--91477 Score: 187
Period size: 60 Copynumber: 2.1 Consensus size: 59
91344 TGATGCTCAT
*
91354 AAACTATGACTCCCATATTAAATTGGTCCTAAACTTTAAAATGTTTTAT-ATAGGTCCTC
1 AAACTATGACTCCCATATTAAATTGGTCCTAAACTCTAAAATGTTTTATAATA-GTCCTC
* * *
91413 AAACTATGGCTCCCATTTTAAATTAGTTCCTAAACTCTAAAATGTTTTATAATAGTCCTC
1 AAACTATGACTCCCATATTAAATT-GGTCCTAAACTCTAAAATGTTTTATAATAGTCCTC
91473 AAACT
1 AAACT
91478 TTCAGTTACA
Statistics
Matches: 59, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
59 22 0.37
60 34 0.58
61 3 0.05
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (59 bp):
AAACTATGACTCCCATATTAAATTGGTCCTAAACTCTAAAATGTTTTATAATAGTCCTC
Found at i:92197 original size:44 final size:44
Alignment explanation
Indices: 92147--92369 Score: 142
Period size: 43 Copynumber: 5.2 Consensus size: 44
92137 AAATTTGATT
* *
92147 AAATTAGG-GACATGAATTATAAAAGTAAAAAGTAAGAGTAAAAA
1 AAATTAGGAGACATCAATTATAAAAGTAAAAAGTAAGA-TTAAAA
* * *
92191 AAATTAGGAGCCA-CAATTACAAAGGTAAAAAGTTAA-ATTAAAA
1 AAATTAGGAGACATCAATTATAAAAGTAAAAAG-TAAGATTAAAA
* * * *
92234 AAATTAGGAGTC-TCAACTAT-AAAGATAGAAAGTAAGATTGAAA
1 AAATTAGGAGACATCAATTATAAAAG-TAAAAAGTAAGATTAAAA
* * * * *
92277 TAATTAGG-GACTTTAATTATAAATGTAAAAAGT-AGAATT-GAA
1 AAATTAGGAGACATCAATTATAAAAGTAAAAAGTAAG-ATTAAAA
* * * ** * *
92319 AAATTA-AATG-CTTCAATTGTAAGGGTAAAAAGTGAGATTACAA
1 AAATTAGGA-GACATCAATTATAAAAGTAAAAAGTAAGATTAAAA
92362 AAATTAGG
1 AAATTAGG
92370 GACCTTAAAT
Statistics
Matches: 140, Mismatches: 26, Indels: 26
0.73 0.14 0.14
Matches are distributed among these distances:
42 39 0.28
43 67 0.48
44 28 0.20
45 6 0.04
ACGTcount: A:0.52, C:0.05, G:0.17, T:0.25
Consensus pattern (44 bp):
AAATTAGGAGACATCAATTATAAAAGTAAAAAGTAAGATTAAAA
Found at i:93783 original size:28 final size:28
Alignment explanation
Indices: 93750--93804 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
93740 AATTTTTTAA
* *
93750 TAAATTTGTTTATATATG-TATAAAATTT
1 TAAATTTATTT-TAAATGATATAAAATTT
93778 TAAATTTATTTTAAATGATATAAAATT
1 TAAATTTATTTTAAATGATATAAAATT
93805 ATTTATCATG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 5 0.21
28 19 0.79
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (28 bp):
TAAATTTATTTTAAATGATATAAAATTT
Found at i:94192 original size:20 final size:19
Alignment explanation
Indices: 94169--94238 Score: 95
Period size: 20 Copynumber: 3.5 Consensus size: 19
94159 ACAGGTTCCA
*
94169 AAATCGCAACGATAATTTGT
1 AAATCGCAACGA-AATATGT
94189 AAATCGCAACGCAAATATGT
1 AAATCGCAACG-AAATATGT
*
94209 AAATCGCAACGCGAATATGT
1 AAATCGCAACG-AAATATGT
94229 AAATCGCAAC
1 AAATCGCAAC
94239 ACAGAAGTCA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
20 46 0.98
21 1 0.02
ACGTcount: A:0.43, C:0.20, G:0.16, T:0.21
Consensus pattern (19 bp):
AAATCGCAACGAAATATGT
Found at i:94198 original size:40 final size:40
Alignment explanation
Indices: 94154--94257 Score: 95
Period size: 40 Copynumber: 2.6 Consensus size: 40
94144 CTCCAATTTT
* * *
94154 GCAACACAGGT-TCCAAAATCGCAACGATAATTTGTAAATC
1 GCAACACAGATAT-CAAAATCGCAACGAGAATATGTAAATC
* * ** *
94194 GCAACGCAAATATGTAAATCGCAACGCGAATATGTAAATC
1 GCAACACAGATATCAAAATCGCAACGAGAATATGTAAATC
*
94234 GCAACACAGA-AGTCAAATTCGCAA
1 GCAACACAGATA-TCAAAATCGCAA
94258 TGCTAATTAC
Statistics
Matches: 49, Mismatches: 13, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
39 1 0.02
40 47 0.96
41 1 0.02
ACGTcount: A:0.42, C:0.22, G:0.16, T:0.19
Consensus pattern (40 bp):
GCAACACAGATATCAAAATCGCAACGAGAATATGTAAATC
Found at i:94443 original size:20 final size:20
Alignment explanation
Indices: 94418--94455 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
94408 GGAGAATTCG
94418 CGTTGCGATTTACATATTAT
1 CGTTGCGATTTACATATTAT
*
94438 CGTTGCGATTTACCTATT
1 CGTTGCGATTTACATATT
94456 CGCAACGCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.18, G:0.16, T:0.45
Consensus pattern (20 bp):
CGTTGCGATTTACATATTAT
Found at i:94560 original size:146 final size:146
Alignment explanation
Indices: 94308--94604 Score: 479
Period size: 146 Copynumber: 2.0 Consensus size: 146
94298 GATTTTCGTT
* * **
94308 TTCGCAATGCGATTCTCCAAAATCGCAAGGCGAATTTCATTTTCGCAATGCTAATTACCTATATC
1 TTCGCAACGCGATTCTCCAAAATCGCAACGCGAATTTCATTTTCGCAACACTAATTACCTATATC
94373 GGTAATTAGCGTTGCGAAATTCGAGTTGCGAATTTGGAGAATTCGCGTTGCGATTTACATATTAT
66 GGTAATTAGCGTTGCGAAATTCGAGTTGCGAATTTGGAGAATTCGCGTTGCGATTTACATATTAT
94438 CGTTGCGATTTACCTA
131 CGTTGCGATTTACCTA
* * * *
94454 TTCGCAACGCGATTTTTCAAAAT-GTCAACGCGTATTTCATTTTCGCAACACTAATTACTTATAT
1 TTCGCAACGCGATTCTCCAAAATCG-CAACGCGAATTTCATTTTCGCAACACTAATTACCTATAT
* **
94518 CGGTATTTAGCGTTGCGAAATTCGAGTTGCGAATTTGGAGAATTCGCGTTTTGATTTACATATTA
65 CGGTAATTAGCGTTGCGAAATTCGAGTTGCGAATTTGGAGAATTCGCGTTGCGATTTACATATTA
94583 TCGTTGCGATTTACCTA
130 TCGTTGCGATTTACCTA
94600 TTCGC
1 TTCGC
94605 GTTGTGAATT
Statistics
Matches: 139, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
145 1 0.01
146 138 0.99
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (146 bp):
TTCGCAACGCGATTCTCCAAAATCGCAACGCGAATTTCATTTTCGCAACACTAATTACCTATATC
GGTAATTAGCGTTGCGAAATTCGAGTTGCGAATTTGGAGAATTCGCGTTGCGATTTACATATTAT
CGTTGCGATTTACCTA
Found at i:94593 original size:20 final size:20
Alignment explanation
Indices: 94570--94635 Score: 78
Period size: 20 Copynumber: 3.3 Consensus size: 20
94560 TTCGCGTTTT
94570 GATTTACATATTATCGTTGC
1 GATTTACATATTATCGTTGC
* ** *
94590 GATTTACCTATTCGCGTTGT
1 GATTTACATATTATCGTTGC
*
94610 GAATTACATATTATCGTTGC
1 GATTTACATATTATCGTTGC
*
94630 AATTTA
1 GATTTA
94636 ACTATTCGCG
Statistics
Matches: 35, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (20 bp):
GATTTACATATTATCGTTGC
Found at i:94605 original size:40 final size:40
Alignment explanation
Indices: 94559--94654 Score: 147
Period size: 40 Copynumber: 2.4 Consensus size: 40
94549 AATTTGGAGA
* * * *
94559 ATTCGCGTTTTGATTTACATATTATCGTTGCGATTTACCT
1 ATTCGCGTTGTGAATTACATATTATCGTTGCAATTTAACT
94599 ATTCGCGTTGTGAATTACATATTATCGTTGCAATTTAACT
1 ATTCGCGTTGTGAATTACATATTATCGTTGCAATTTAACT
*
94639 ATTCGCGTTGCGAATT
1 ATTCGCGTTGTGAATT
94655 TGACTCTTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.44
Consensus pattern (40 bp):
ATTCGCGTTGTGAATTACATATTATCGTTGCAATTTAACT
Found at i:94641 original size:20 final size:20
Alignment explanation
Indices: 94578--94655 Score: 52
Period size: 20 Copynumber: 3.9 Consensus size: 20
94568 TTGATTTACA
* * *
94578 TATTATCGTTGCGATTTACC
1 TATTAGCGTTGCAATTTAAC
* *
94598 TATTCGCGTTGTGAA-TT-AC
1 TATTAGCGTTG-CAATTTAAC
*
94617 ATATTATCGTTGCAATTTAAC
1 -TATTAGCGTTGCAATTTAAC
*
94638 TATTCGCGTTGCGAATTT
1 TATTAGCGTTGC-AATTT
94656 GACTCTTTTT
Statistics
Matches: 43, Mismatches: 10, Indels: 9
0.69 0.16 0.15
Matches are distributed among these distances:
19 3 0.07
20 32 0.74
21 8 0.19
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.44
Consensus pattern (20 bp):
TATTAGCGTTGCAATTTAAC
Found at i:96644 original size:20 final size:20
Alignment explanation
Indices: 96601--96681 Score: 65
Period size: 20 Copynumber: 4.0 Consensus size: 20
96591 CGACTCTTTT
* * **
96601 GCGAATTTGACTTTCGCATT
1 GCGAATTTCATTTTCGCAAC
96621 GCGAATTTCATTTTCGCAAC
1 GCGAATTTCATTTTCGCAAC
***
96641 GCG-ATTCTCCAAAATCGCAAC
1 GCGAATT-T-CATTTTCGCAAC
*
96662 GCGGATTTCATTTTCGCAAC
1 GCGAATTTCATTTTCGCAAC
96682 ACTAATTACC
Statistics
Matches: 48, Mismatches: 10, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
19 3 0.06
20 29 0.60
21 13 0.27
22 3 0.06
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (20 bp):
GCGAATTTCATTTTCGCAAC
Found at i:96761 original size:21 final size:21
Alignment explanation
Indices: 96714--96764 Score: 57
Period size: 22 Copynumber: 2.4 Consensus size: 21
96704 TGGCATTGCG
* **
96714 AAATTCGAGTTGCGAATTTGG
1 AAATTCGCGTTGCGAATTTCC
*
96735 AGAATTCGCGTTGCGATTTTCC
1 A-AATTCGCGTTGCGAATTTCC
96757 AAATTCGC
1 AAATTCGC
96765 AACGCGAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 8 0.32
22 17 0.68
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (21 bp):
AAATTCGCGTTGCGAATTTCC
Found at i:96810 original size:41 final size:41
Alignment explanation
Indices: 96747--96830 Score: 125
Period size: 41 Copynumber: 2.0 Consensus size: 41
96737 AATTCGCGTT
* *
96747 GCGATTTTCCAAATTCGCAACGCGAATTTCGTTTTCGGAAC
1 GCGATTCTCCAAATTCGCAACGCGAATTTCGTTTTCGCAAC
*
96788 GCGATTCTCCAAAATT-GTAACGCGAATTTCGTTTTCGCAAC
1 GCGATTCTCC-AAATTCGCAACGCGAATTTCGTTTTCGCAAC
96829 GC
1 GC
96831 TAATTACTGA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
41 34 0.87
42 5 0.13
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (41 bp):
GCGATTCTCCAAATTCGCAACGCGAATTTCGTTTTCGCAAC
Found at i:96948 original size:89 final size:88
Alignment explanation
Indices: 96780--96952 Score: 249
Period size: 89 Copynumber: 2.0 Consensus size: 88
96770 GAATTTCGTT
* * * *
96780 TTCGGAACGCGATTCTCCAAAATTGTAACGCGAATTTCGTTTTCGCAACGCTAATTACTGATATA
1 TTCGCAACGCGATTCTCCAAAATCGCAACGCGAATTTCGTTATCGCAACGCTAATTACTGATATA
*
96845 GGTAATTAGCGTTGCGAAAACAAA
66 GGTAATTAACGTTGC-AAAACAAA
*
96869 TTCGCAACGCGATTCTCCAAAATCGCAATGCGAATTTCGTTATCGCAACGCTAATTACCT-ATAT
1 TTCGCAACGCGATTCTCCAAAATCGCAACGCGAATTTCGTTATCGCAACGCTAATTA-CTGATAT
* *
96933 CGGTAATTAATGTTGCAAAA
65 AGGTAATTAACGTTGCAAAA
96953 TTTGAGTTGC
Statistics
Matches: 75, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
88 4 0.05
89 69 0.92
90 2 0.03
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.29
Consensus pattern (88 bp):
TTCGCAACGCGATTCTCCAAAATCGCAACGCGAATTTCGTTATCGCAACGCTAATTACTGATATA
GGTAATTAACGTTGCAAAACAAA
Found at i:97024 original size:20 final size:20
Alignment explanation
Indices: 96975--97030 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
96965 ATTTTGGAGA
96975 ATTCGCGTTGCGATTTACAT
1 ATTCGCGTTGCGATTTACAT
*** *
96995 ATTATAGTTGCGATTTACCT
1 ATTCGCGTTGCGATTTACAT
97015 ATTCGCGTTGCGATTT
1 ATTCGCGTTGCGATTT
97031 TCCAGCGTTG
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.43
Consensus pattern (20 bp):
ATTCGCGTTGCGATTTACAT
Found at i:97079 original size:20 final size:20
Alignment explanation
Indices: 97054--97107 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
97044 ATTTGGAAAA
*
97054 TCGCAACGTAAATTTCATTT
1 TCGCAACGCAAATTTCATTT
* *
97074 TCGCAACGCGAATTTCGTTT
1 TCGCAACGCAAATTTCATTT
* *
97094 TTGCAACGCTAATT
1 TCGCAACGCAAATT
97108 ACCTATATCA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (20 bp):
TCGCAACGCAAATTTCATTT
Found at i:97254 original size:20 final size:20
Alignment explanation
Indices: 97175--97252 Score: 88
Period size: 20 Copynumber: 3.9 Consensus size: 20
97165 TGTGATTTAC
*
97175 CTATTCGCGTTGCGAATT-A
1 CTATTCGCGTTGCGATTTGA
** *
97194 CGTATTATCGTTGCGATTTAA
1 C-TATTCGCGTTGCGATTTGA
97215 CTATTCGCGTTGCGAATTTGA
1 CTATTCGCGTTGCG-ATTTGA
97236 CT-TTCGCGTTGCGATTT
1 CTATTCGCGTTGCGATTT
97253 TGGAACTTGT
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
19 5 0.10
20 36 0.72
21 9 0.18
ACGTcount: A:0.18, C:0.19, G:0.22, T:0.41
Consensus pattern (20 bp):
CTATTCGCGTTGCGATTTGA
Found at i:104983 original size:26 final size:27
Alignment explanation
Indices: 104953--105004 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 27
104943 ACGTACTTTA
*
104953 GGTCATTTTATACTTTA-GGGTATTTT
1 GGTCATTTTACACTTTAGGGGTATTTT
104979 GGTCATTTTACACTTTAGGGGTATTT
1 GGTCATTTTACACTTTAGGGGTATTT
105005 CTATAATTCC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 16 0.67
27 8 0.33
ACGTcount: A:0.19, C:0.10, G:0.21, T:0.50
Consensus pattern (27 bp):
GGTCATTTTACACTTTAGGGGTATTTT
Found at i:107152 original size:131 final size:132
Alignment explanation
Indices: 106828--107186 Score: 461
Period size: 132 Copynumber: 2.7 Consensus size: 132
106818 AGAGAAAATG
* * * * * *
106828 ATAATATTTAATTATTTTCAA-CAGAGAATAAATGACATCTCATGCCTTAAAGCGGCCAATTATT
1 ATAATATCTAATTATTTACAATCA-AGAATAAATGACCTCTCATGCCTTAAAGCAGTCATTTATT
* * * * *
106892 ACTCCAATCGAAAGGAAGAGATATCACTATTTCTTCTTAAAATTCAATATTGATTCGAGAGAAAA
65 ACTCCAACCGAAATGAAAAGATATCACTATTTCGTCTTAAAAATCAATATTGATTCGAGAGAAAA
*
106957 ACG
130 ACA
* ** *
106960 GTAATATCTAATTATTTACAATTGAGAATAATTGACCTCTCATGCCTTAAAGCAGTCATTTATTA
1 ATAATATCTAATTATTTACAATCAAGAATAAATGACCTCTCATGCCTTAAAGCAGTCATTTATTA
* * *
107025 CACCAACCGAAATGAAAAGATATCATTATTTCGTCTTAAAAATCAATATTGATTCGAGA-CAAAA
66 CTCCAACCGAAATGAAAAGATATCACTATTTCGTCTTAAAAATCAATATTGATTCGAGAGAAAAA
107089 CA
131 CA
* * * *
107091 ATAATATCTAATTATTTCCAATCAAGAATAAATGACCTTTCATACCTTAAATCAGTCATTTATTA
1 ATAATATCTAATTATTTACAATCAAGAATAAATGACCTCTCATGCCTTAAAGCAGTCATTTATTA
* * *
107156 CTCTAACCGAAATGAAAAAATATTACTATTT
66 CTCCAACCGAAATGAAAAGATATCACTATTT
107187 TCAATATCGA
Statistics
Matches: 194, Mismatches: 32, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
131 88 0.45
132 106 0.55
ACGTcount: A:0.41, C:0.16, G:0.10, T:0.33
Consensus pattern (132 bp):
ATAATATCTAATTATTTACAATCAAGAATAAATGACCTCTCATGCCTTAAAGCAGTCATTTATTA
CTCCAACCGAAATGAAAAGATATCACTATTTCGTCTTAAAAATCAATATTGATTCGAGAGAAAAA
CA
Found at i:114760 original size:40 final size:40
Alignment explanation
Indices: 114716--114901 Score: 146
Period size: 40 Copynumber: 4.7 Consensus size: 40
114706 ATACAACAAA
* *
114716 GGTGATGTATTACACGGGATGCACACCTAAATATGAGAGT
1 GGTGATGTATTACACGGGATACACACCTAAATATAAGAGT
* *
114756 GGTGATGTATTGA-ATGGGATACACATCTAAATATAAGAGT
1 GGTGATGTATT-ACACGGGATACACACCTAAATATAAGAGT
* * * ** * *
114796 GGTGATGTATTGCACGAGACACACACCCCGAATACAA-A-A
1 GGTGATGTATTACACGGGATACACA-CCTAAATATAAGAGT
* * * *
114835 CGTGATGTATTACATGGGATACGCACCTAAATATGAGA-T
1 GGTGATGTATTACACGGGATACACACCTAAATATAAGAGT
* * **
114874 CGATGATGTATTCCACATGATACACACC
1 -GGTGATGTATTACACGGGATACACACC
114902 CAATACAATA
Statistics
Matches: 110, Mismatches: 31, Indels: 10
0.73 0.21 0.07
Matches are distributed among these distances:
38 7 0.06
39 20 0.18
40 75 0.68
41 8 0.07
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.25
Consensus pattern (40 bp):
GGTGATGTATTACACGGGATACACACCTAAATATAAGAGT
Found at i:114919 original size:79 final size:79
Alignment explanation
Indices: 114756--114924 Score: 188
Period size: 79 Copynumber: 2.2 Consensus size: 79
114746 ATATGAGAGT
* * *
114756 GGTGATGTATTGAATGGGATACACATCTAAATATAAGAGTGGTGATGTATTGCACGAGACACACA
1 GGTGATGTATTGAATGGGATACACACCTAAATATAAGAGTGATGATGTATTCCACGAGACACACA
114821 CCCCGAATACAAAA
66 CCCCGAATACAAAA
* * * *
114835 CGTGATGTATT-ACATGGGATACGCACCTAAATATGAGA-TCGATGATGTATTCCAC-ATGATAC
1 GGTGATGTATTGA-ATGGGATACACACCTAAATATAAGAGT-GATGATGTATTCCACGA-GACAC
114897 ACA-CCC-AATACAATAAA
63 ACACCCCGAATAC-A-AAA
114914 GGTGAT-TATTG
1 GGTGATGTATTG
114925 CACATGATAA
Statistics
Matches: 76, Mismatches: 8, Indels: 12
0.79 0.08 0.12
Matches are distributed among these distances:
77 5 0.07
78 11 0.14
79 60 0.79
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (79 bp):
GGTGATGTATTGAATGGGATACACACCTAAATATAAGAGTGATGATGTATTCCACGAGACACACA
CCCCGAATACAAAA
Found at i:114950 original size:39 final size:40
Alignment explanation
Indices: 114877--114985 Score: 134
Period size: 39 Copynumber: 2.8 Consensus size: 40
114867 ATGAGATCGA
* * *
114877 TGATGTATTCCACATGATACACACC-CAATACAATAAAGG
1 TGATATATTGCACATGATACACACCTAAATACAATAAAGG
* *
114916 TGAT-TATTGCACATGATAAATACCTAAATACAATAAAGG
1 TGATATATTGCACATGATACACACCTAAATACAATAAAGG
*
114955 TGATATATAGCACGA-GATACACACCTAAATA
1 TGATATATTGCAC-ATGATACACACCTAAATA
114986 TGAAAGTAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
38 17 0.28
39 21 0.35
40 21 0.35
41 1 0.02
ACGTcount: A:0.44, C:0.18, G:0.13, T:0.25
Consensus pattern (40 bp):
TGATATATTGCACATGATACACACCTAAATACAATAAAGG
Found at i:118275 original size:55 final size:55
Alignment explanation
Indices: 117978--118736 Score: 980
Period size: 54 Copynumber: 14.1 Consensus size: 55
117968 GCACACCTAA
* * * * * *
117978 TGCCAATACAGAAATTCATAATCTCATTATG-ATTACTTAG-GTTGCACACACAG
1 TGCCCATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAG
* *
118031 TTCCAATACGGAAATTCATAAACTTATTATGAATTTCTTAG-TTTGCACACACACAG
1 TGCCCATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTG--CACACACAG
* * *
118087 TGCCCATACGGAAATTCATAAACTCATTACGAATTTCTTA-ATTTGCACACACAG
1 TGCCCATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAG
* *
118141 TTCCCATACGAAAATTCATAAACTTATTATGAATTTCTTAG-TTTGCACACACAG
1 TGCCCATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAG
* * * * *
118195 TGCCTATACGGAAATTCATAAACTTATTTTGAATTTATTAGTTTTGAACATACAG
1 TGCCCATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAG
* *
118250 TGCCCATACAGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAA
1 TGCCCATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAG
* *
118305 TGCCCATAC--ATAATTCATAAACTTATTATGAATTTCTTAGTTTTGTACATACAG
1 TGCCCATACGGA-AATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAG
* * *
118359 CT-CCCATA-AGAAAATCATAAAC-TATTATGAATTTCTTAGTTTT--TCACACAG
1 -TGCCCATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAG
* * * * *
118410 -GCTCATACGAAAATTCATAAACTTATTATGAATTTATTAGTTTTGCACATACGG
1 TGCCCATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAG
118464 TGCCCATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAG
1 TGCCCATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAG
* * *
118519 TGCCTATACGGAAATTCAT-AACTTATTATGAATTTCTTAGTTTTTCACACACAA
1 TGCCCATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAG
* * *
118573 TGCTCATATGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACATAG
1 TGCCCATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAG
*
118628 TGCCCATACGGAAATTCATAAAC---TTATGAATTTCTTAG-TTTGCACATACAG
1 TGCCCATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAG
** * *
118679 TGCCCATATAGAAATTCATAAACTTATTATGAATTTCTTAG-TTTGCACATATAG
1 TGCCCATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAG
118733 TGCC
1 TGCC
118737 ATTCGGTAAT
Statistics
Matches: 623, Mismatches: 63, Indels: 39
0.86 0.09 0.05
Matches are distributed among these distances:
50 5 0.01
51 49 0.08
52 35 0.06
53 49 0.08
54 246 0.39
55 190 0.30
56 49 0.08
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.36
Consensus pattern (55 bp):
TGCCCATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAG
Found at i:118290 original size:109 final size:109
Alignment explanation
Indices: 117978--118736 Score: 974
Period size: 109 Copynumber: 7.0 Consensus size: 109
117968 GCACACCTAA
* * * * * * * * * *
117978 TGCCAATACAGAAATTCATAATCTCATTATG-ATTACTTAG-GTTGCACACACAGTTCCAATACG
1 TGCCCATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACATACAGTGCCCATACA
118041 GAAATTCATAAACTTATTATGAATTTCTTAGTTTGCACACACACAG
66 GAAATTCATAAACTTATTATGAATTTCTTAGTTTG--CACACACAG
* * * * *
118087 TGCCCATACGGAAATTCATAAACTCATTACGAATTTCTTA-ATTTGCACACACAGTTCCCATAC-
1 TGCCCATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACATACAGTGCCCATACA
118150 GAAAATTCATAAACTTATTATGAATTTCTTAGTTTGCACACACAG
66 G-AAATTCATAAACTTATTATGAATTTCTTAGTTTGCACACACAG
* * * *
118195 TGCCTATACGGAAATTCATAAACTTATTTTGAATTTATTAGTTTTGAACATACAGTGCCCATACA
1 TGCCCATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACATACAGTGCCCATACA
*
118260 GAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAA
66 GAAATTCATAAACTTATTATGAATTTCTTAG-TTTGCACACACAG
*
118305 TGCCCATAC--ATAATTCATAAACTTATTATGAATTTCTTAGTTTTGTACATACAGCT-CCCATA
1 TGCCCATACGGA-AATTCATAAACTTATTATGAATTTCTTAGTTTTGCACATACAG-TGCCCATA
* **
118367 -AGAAAATCATAAAC-TATTATGAATTTCTTAGTTT-TTCACACAG
64 CAGAAATTCATAAACTTATTATGAATTTCTTAGTTTGCACACACAG
* * * * *
118410 -GCTCATACGAAAATTCATAAACTTATTATGAATTTATTAGTTTTGCACATACGGTGCCCATACG
1 TGCCCATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACATACAGTGCCCATACA
118474 GAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAG
66 GAAATTCATAAACTTATTATGAATTTCTTAG-TTTGCACACACAG
* * * * * **
118519 TGCCTATACGGAAATTCAT-AACTTATTATGAATTTCTTAGTTTTTCACACACAATGCTCATATG
1 TGCCCATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACATACAGTGCCCATACA
*
118583 GAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACATAG
66 GAAATTCATAAACTTATTATGAATTTCTTAG-TTTGCACACACAG
*
118628 TGCCCATACGGAAATTCATAAAC---TTATGAATTTCTTAG-TTTGCACATACAGTGCCCATATA
1 TGCCCATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACATACAGTGCCCATACA
* *
118689 GAAATTCATAAACTTATTATGAATTTCTTAGTTTGCACATATAG
66 GAAATTCATAAACTTATTATGAATTTCTTAGTTTGCACACACAG
118733 TGCC
1 TGCC
118737 ATTCGGTAAT
Statistics
Matches: 582, Mismatches: 51, Indels: 38
0.87 0.08 0.06
Matches are distributed among these distances:
104 8 0.01
105 68 0.12
106 65 0.11
107 49 0.08
108 61 0.10
109 230 0.40
110 101 0.17
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.36
Consensus pattern (109 bp):
TGCCCATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACATACAGTGCCCATACA
GAAATTCATAAACTTATTATGAATTTCTTAGTTTGCACACACAG
Done.