genome.fa.s4938.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004938.1 Hibiscus syriacus cultivar Beakdansim tig00011107_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88094

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266--698	193	2.2	194	84	4	554	33	14	13	38	1.85
706--730	12	2.1	12	100	0	50	40	20	0	40	1.52
738--1220	195	2.5	196	86	3	643	32	15	14	37	1.88
1372--1739	193	1.9	196	83	8	493	31	14	11	42	1.81
4433--4476	18	2.5	17	85	7	52	50	18	0	31	1.47
6346--6374	9	3.2	9	100	0	58	0	44	0	55	0.99
14206--14239	2	17.0	2	100	0	68	0	50	0	50	1.00
15729--15762	12	2.9	12	95	4	61	52	0	8	38	1.33
17263--17700	82	5.3	82	85	5	551	34	14	15	35	1.88
17268--17700	163	2.6	164	82	5	563	34	14	15	35	1.88
19147--19215	35	2.0	34	82	2	84	68	2	8	20	1.30
22993--23034	17	2.4	18	85	14	54	47	0	0	52	1.00
23000--23089	29	2.8	33	75	20	93	46	0	2	51	1.13
22989--23159	93	1.9	86	80	8	189	47	0	2	49	1.21
23128--23172	23	2.0	23	86	8	65	42	0	2	55	1.12
23133--23179	23	2.1	22	84	4	58	44	0	2	53	1.12
23122--23201	34	2.4	34	72	17	78	41	0	2	56	1.13
23167--23235	19	3.6	19	71	21	54	46	1	1	50	1.19
29340--29377	18	2.1	18	100	0	76	21	10	21	47	1.80
31981--32041	17	3.8	17	75	16	67	26	4	0	68	1.09
31977--32046	30	2.3	30	95	0	122	27	4	0	68	1.08
34578--34619	18	2.5	16	85	14	66	28	16	19	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34804--34869	26	2.5	26	79	18	66	68	6	6	19	1.33
35792--35912	59	2.1	59	96	3	226	14	23	29	32	1.94
35938--36018	28	2.9	28	92	1	128	16	11	30	41	1.82
36097--36149	15	3.9	14	76	19	58	47	3	0	49	1.19
36091--36146	24	2.2	26	90	6	89	50	3	0	46	1.19
36091--36146	26	2.2	24	87	12	78	50	3	0	46	1.19
36099--36269	41	4.1	41	81	7	193	45	6	4	43	1.50
36113--36269	84	1.9	85	83	4	210	45	6	5	43	1.51
36224--36276	24	2.2	24	89	0	79	41	7	3	47	1.50
36240--36312	34	2.2	33	81	16	80	43	4	2	49	1.36
36323--36362	3	13.3	3	100	0	80	67	0	0	32	0.91
37771--37814	18	2.3	20	88	7	65	43	2	0	54	1.12
45178--45240	23	2.7	23	87	0	90	19	23	26	30	1.98
45677--45735	30	2.0	29	83	3	73	37	6	22	33	1.80
44461--46023	788	2.0	788	96	0	2894	38	10	20	30	1.86
45969--46033	23	2.8	23	77	9	69	18	20	24	36	1.94
46461--46487	2	13.5	2	100	0	54	48	0	0	51	1.00
47471--47529	30	2.0	29	83	3	73	37	6	22	33	1.80
47760--47821	23	2.7	23	87	0	97	16	25	27	30	1.96
49266--49324	30	2.0	29	83	3	73	37	6	22	33	1.80
49554--49637	23	3.7	23	91	0	141	16	26	27	29	1.97
51360--51421	23	2.7	23	71	0	61	17	24	24	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51854--51882	2	14.5	2	100	0	58	48	0	0	51	1.00
53152--53235	23	3.7	23	91	0	141	16	26	27	29	1.97
54666--54724	30	2.0	29	83	3	73	37	6	22	33	1.80
54953--55029	23	3.3	23	88	0	109	18	24	25	31	1.97
56475--56533	30	2.0	29	83	3	73	37	6	22	33	1.80
56763--56845	23	3.7	23	85	1	114	18	24	27	30	1.98
57282--57326	2	22.5	2	100	0	90	48	0	0	51	1.00
58607--58666	23	2.6	23	82	10	77	23	15	25	36	1.93
59900--59936	18	2.0	19	89	5	58	45	0	24	29	1.53
60095--60153	30	2.0	29	83	3	73	37	6	22	33	1.80
60383--60466	23	3.7	23	80	0	105	20	22	26	30	1.98
62711--62767	21	2.7	21	97	0	105	26	26	28	19	1.99
62963--63017	13	4.2	13	75	13	58	49	12	3	34	1.59
63003--63101	33	3.0	33	94	1	164	45	15	7	32	1.73
63096--63137	21	2.0	21	90	0	66	50	7	11	30	1.66
65770--65831	23	2.7	23	84	0	79	16	22	27	33	1.95
67553--67645	23	4.0	23	90	0	132	17	25	26	30	1.97
69358--69426	23	3.0	23	77	8	77	21	13	24	40	1.89
74616--74677	23	2.7	22	78	7	70	17	22	25	33	1.96
80138--80274	68	2.0	68	92	0	229	30	26	13	29	1.94
80490--81154	55	12.1	55	87	1	870	27	18	18	35	1.94
81570--81641	20	3.5	20	74	10	83	22	29	15	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81548--81662	41	2.8	40	90	3	169	24	25	15	34	1.95
81589--81665	21	3.8	20	74	10	75	25	24	16	32	1.96
85306--85373	24	2.9	24	89	6	95	35	8	17	38	1.81
85561--85602	2	22.0	2	90	9	70	50	0	0	50	1.00
87483--87538	26	2.2	26	100	0	112	46	14	14	25	1.82

Tables:   1

The End!