genome.fa.s4939.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004939.1 Hibiscus syriacus cultivar Beakdansim tig00011109_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107199

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2808--2855	23	2.1	23	92	0	78	10	43	20	25	1.83
15019--15088	25	2.9	25	85	6	92	62	0	4	32	1.14
16907--17011	35	3.0	35	95	0	192	44	24	0	30	1.54
17534--17607	35	2.1	35	82	5	87	31	0	21	47	1.51
20876--20983	51	2.1	52	98	1	209	41	6	11	40	1.66
27270--27355	39	2.2	37	82	6	100	38	12	19	29	1.89
28798--28879	42	2.0	42	92	0	137	18	19	21	40	1.92
29294--29375	42	2.0	42	85	0	110	20	18	20	40	1.92
28690--29628	249	3.7	249	88	4	1291	31	15	16	36	1.90
29552--29694	42	3.4	42	85	0	180	23	20	21	34	1.97
31919--31986	22	3.1	22	69	14	59	50	1	4	44	1.31
33076--33233	49	3.3	49	73	18	163	44	7	21	26	1.79
33034--33208	42	4.0	43	73	14	124	44	5	23	27	1.74
33034--33305	94	2.9	93	82	6	302	45	6	20	26	1.75
33218--33416	85	2.3	84	81	4	211	56	4	12	27	1.55
33287--33416	42	3.1	42	81	5	149	60	5	8	26	1.48
42502--42575	35	2.1	38	80	12	93	47	1	4	47	1.29
45544--45572	2	14.5	2	100	0	58	0	48	0	51	1.00
51598--51697	51	2.0	51	100	0	200	39	2	22	37	1.65
54101--54207	34	3.4	32	75	15	89	69	1	5	23	1.20
55667--55712	21	2.2	21	100	0	92	15	30	32	21	1.94
62291--62590	124	2.4	124	90	1	458	32	16	27	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63315--63473	36	4.4	36	86	3	178	35	23	18	22	1.96
63670--64927	54	23.7	54	80	7	1126	32	18	25	24	1.97
63865--64030	55	3.0	55	91	0	269	30	16	24	28	1.96
63865--64060	55	3.6	55	87	4	249	30	16	22	30	1.96
63670--64927	158	7.9	159	77	9	1147	32	18	25	24	1.97
63658--64974	212	6.2	208	78	9	1202	32	17	25	24	1.97
64926--65206	111	2.5	110	86	3	386	31	14	23	29	1.94
64926--65249	166	2.0	163	85	3	434	31	14	24	29	1.95
64887--65304	55	7.6	55	84	5	438	31	15	24	28	1.95
64932--65301	111	3.4	111	81	4	380	31	14	24	29	1.94
64934--65332	166	2.4	166	81	5	391	32	15	24	28	1.95
66581--66626	21	2.2	21	100	0	92	15	30	32	21	1.94
69730--69968	102	2.3	101	86	4	320	42	11	17	28	1.84
69805--70251	36	12.9	35	68	18	204	42	12	17	27	1.85
69902--70005	37	2.9	36	85	4	138	45	12	18	24	1.84
69804--70243	138	3.2	138	89	1	639	43	12	17	26	1.84
71562--71788	95	2.6	85	73	18	228	32	19	17	29	1.95
71620--71800	95	1.9	95	88	4	276	30	19	17	32	1.95
75148--75199	20	2.6	19	76	8	59	73	1	9	15	1.18
75310--75340	2	15.5	2	100	0	62	51	0	0	48	1.00
75343--75383	22	1.9	21	85	14	57	65	0	2	31	1.05
75620--75661	13	3.3	13	80	12	52	73	0	2	23	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77753--77779	2	13.5	2	100	0	54	51	0	0	48	1.00
81254--81294	3	13.7	3	94	0	73	63	0	0	36	0.95
81611--82179	253	2.2	255	88	1	822	33	15	16	34	1.91
82895--83027	29	4.6	29	80	3	144	49	10	0	39	1.43
85925--85968	19	2.2	20	88	11	65	77	0	2	20	0.88
85925--85984	19	3.0	20	81	13	63	75	1	3	20	1.04
87155--87207	28	1.9	27	88	3	79	49	1	0	49	1.12
87161--87297	63	2.2	63	85	5	181	45	4	1	48	1.31
87204--87505	68	4.5	69	76	15	221	44	7	1	45	1.44
87294--87363	30	2.3	31	87	7	106	48	10	0	41	1.36
87199--87505	63	4.6	68	75	14	216	43	7	1	46	1.43
87325--87485	37	4.4	37	84	10	215	43	9	2	44	1.49
90839--90905	23	3.0	23	86	6	84	16	22	26	34	1.95
91115--91162	6	8.0	6	100	0	96	50	0	16	33	1.46
96251--96296	21	2.1	21	84	8	56	17	19	26	36	1.94
98051--98099	22	2.2	23	82	10	57	22	2	26	48	1.61

Tables:   1

The End!