genome.fa.s494.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000494.1 Hibiscus syriacus cultivar Beakdansim tig00000941_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66685

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
972--1038	20	3.3	20	89	0	98	35	23	17	22	1.95
968--1058	40	2.3	41	81	9	107	39	23	15	21	1.91
1029--1073	20	2.2	20	88	7	65	44	24	8	22	1.81
1646--1698	19	2.8	20	88	8	83	13	16	22	47	1.82
3233--3273	21	2.0	21	85	0	55	19	14	34	31	1.92
3673--3776	42	2.5	42	85	3	129	25	37	14	23	1.92
3665--3765	21	4.8	21	71	7	71	25	32	16	24	1.96
3715--3779	21	3.1	21	77	0	76	23	36	18	21	1.95
5107--5255	64	2.3	64	94	0	253	29	2	16	51	1.56
5314--5418	20	5.2	20	82	0	129	37	23	19	20	1.94
5314--5426	40	2.8	40	79	0	145	35	23	20	21	1.96
7903--8002	24	4.2	24	90	0	155	38	19	17	26	1.93
7917--8018	48	2.1	48	83	0	123	37	18	15	28	1.92
8949--9007	20	3.0	20	69	18	50	38	11	18	30	1.87
8954--9060	40	2.7	40	79	4	117	34	11	22	31	1.89
9118--9160	21	2.0	21	86	0	59	39	16	23	20	1.92
24284--24322	20	2.0	20	95	5	71	35	15	7	41	1.76
24287--24330	19	2.2	20	84	4	54	50	9	6	34	1.61
32650--32700	21	2.4	21	90	0	84	7	31	39	21	1.82
40757--40801	21	2.1	21	88	8	65	46	0	0	53	1.00
44538--44729	37	5.6	37	68	23	141	42	16	14	26	1.86
44571--44692	30	3.8	30	71	19	86	39	15	14	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44344--44905	65	8.6	67	86	4	654	41	14	15	28	1.86
46362--46463	25	4.1	23	74	14	71	4	10	4	79	1.04
46397--46450	14	3.9	14	78	7	56	5	9	3	81	0.97
48972--49017	20	2.2	21	84	3	58	47	4	2	45	1.34
51646--51910	131	2.0	131	84	4	347	27	16	29	25	1.97
52481--52530	3	16.3	3	91	4	82	64	0	2	34	1.05
54893--54927	2	17.5	2	100	0	70	51	0	0	48	1.00
56606--56647	3	14.0	3	100	0	84	66	0	0	33	0.92
56968--57355	138	2.8	138	87	1	555	27	14	28	28	1.96
57301--57390	40	2.2	40	98	0	171	21	12	38	27	1.89
57418--57729	66	4.8	65	88	3	412	39	14	17	29	1.89
57418--57729	131	2.4	131	86	3	423	39	14	17	29	1.89
57682--57780	37	2.7	37	85	6	130	38	12	21	28	1.89
57695--57810	37	3.2	37	80	8	121	37	12	17	31	1.88
61243--61288	6	7.2	6	83	11	56	50	13	17	19	1.78

Tables:   1

The End!