Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004940.1 Hibiscus syriacus cultivar Beakdansim tig00011110_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30304

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
226--258
11
2.9
12
91
8
52
39
9
0
51
1.34
9236--9286
24
2.2
24
89
6
79
47
1
7
43
1.43
9532--9560
9
3.2
9
100
0
58
55
0
44
0
0.99
14725--15744
200
5.1
200
85
1
1316
39
13
15
32
1.86
15297--15339
21
2.0
21
86
4
59
30
9
9
51
1.65
16164--16207
18
2.4
18
79
20
56
29
36
0
34
1.58
16525--16568
2
22.0
2
100
0
88
50
0
0
50
1.00
18547--18576
15
2.0
15
93
0
51
30
6
13
50
1.67
18829--18946
6
19.7
6
80
3
112
30
11
5
51
1.62
18829--18946
36
3.3
36
86
0
164
30
11
5
51
1.62
18829--18945
30
3.9
30
82
2
128
30
11
5
52
1.61
20772--20810
21
1.9
20
94
5
69
23
10
15
51
1.73
20396--21462
446
2.4
445
88
3
1570
43
13
13
29
1.83
21218--21263
21
2.2
20
85
7
65
23
13
15
47
1.80
23316--23357
2
21.0
2
100
0
84
50
0
0
50
1.00

Tables:   1

The End!