Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004941.1 Hibiscus syriacus cultivar Beakdansim tig00011111_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61844

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
443--478
2
18.0
2
100
0
72
50
0
0
50
1.00
2769--2877
29
3.8
29
92
4
177
34
21
4
39
1.74
2769--2877
57
1.9
58
90
5
177
34
21
4
39
1.74
3447--3540
31
3.0
31
100
0
188
29
28
9
31
1.89
8156--8265
29
3.8
29
95
2
195
35
20
4
39
1.73
16698--16742
21
2.1
21
87
0
63
31
28
24
15
1.96
17413--17456
22
2.0
22
86
4
63
45
0
22
31
1.53
18334--18637
149
2.0
149
97
0
572
27
17
20
34
1.95
18616--18660
23
2.0
23
86
0
63
20
24
28
26
1.99
21791--21835
21
2.1
21
83
0
54
33
28
22
15
1.95
22415--22449
18
1.9
18
88
11
54
54
5
17
22
1.64
22506--22549
22
2.0
22
86
4
63
45
0
22
31
1.53
23430--23733
149
2.0
149
96
0
563
27
17
20
34
1.95
23712--23756
23
2.0
23
86
0
63
20
24
28
26
1.99
31116--31173
12
5.5
10
75
18
55
65
0
12
22
1.25
31116--31173
22
2.7
22
79
15
68
65
0
12
22
1.25
31359--31463
16
6.3
16
69
16
61
70
2
5
20
1.21
31373--31472
35
2.9
35
74
12
82
73
3
7
17
1.19
33205--33829
98
6.3
98
95
2
1069
22
19
24
34
1.97
33632--33835
105
1.9
106
93
1
356
22
19
25
33
1.97
34498--34532
18
1.9
18
88
0
52
8
17
0
74
1.06
47366--47398
5
6.6
5
96
0
57
78
18
3
0
0.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52740--53105
177
2.0
181
93
6
634
30
18
10
39
1.85
54553--54586
13
2.6
13
95
0
59
64
0
23
11
1.26
55135--55161
3
9.0
3
100
0
54
33
0
0
66
0.92
57485--57613
63
2.0
63
100
0
258
25
19
18
36
1.94
58654--58854
71
2.8
71
96
0
368
33
31
3
31
1.75

Tables:   1

The End!