Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004942.1 Hibiscus syriacus cultivar Beakdansim tig00011112_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57673

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3844--3904
23
2.7
23
76
5
61
36
11
19
32
1.88
10638--10669
2
16.0
2
100
0
64
0
50
0
50
1.00
11201--11255
20
2.6
22
74
8
60
38
21
7
32
1.81
11153--11332
62
2.9
60
79
8
152
32
17
8
41
1.79
11314--11381
20
3.3
20
82
10
93
23
16
8
51
1.72
11510--11548
16
2.5
15
84
8
51
28
5
0
66
1.12
12131--12164
12
2.8
12
90
0
50
55
29
0
14
1.40
12288--12343
24
2.3
24
84
0
67
26
16
16
41
1.88
13727--13979
31
8.2
31
92
0
425
33
16
12
37
1.86
13876--13959
15
5.5
15
65
25
50
30
15
14
39
1.87
14489--14650
64
2.5
63
79
7
159
27
19
20
32
1.97
16875--16924
18
2.8
17
79
8
55
58
10
8
24
1.57
17224--17318
20
4.8
20
85
0
109
43
18
10
27
1.83
17370--17467
20
4.9
20
77
1
90
21
11
22
44
1.83
19025--19136
21
5.3
21
79
4
118
29
15
34
20
1.93
19541--19595
21
2.6
21
97
0
101
36
30
14
18
1.91
19541--19608
21
3.2
21
85
8
93
36
30
13
19
1.90
19774--19871
42
2.3
42
75
6
108
29
15
30
24
1.95
21370--21408
20
2.0
20
84
0
51
56
17
7
17
1.64
21446--21483
20
1.9
20
88
0
58
21
13
21
44
1.85
24824--24857
18
1.9
18
94
5
61
41
5
5
47
1.52
30326--30377
9
6.1
9
76
13
56
34
0
1
63
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30319--30375
16
3.5
16
88
4
78
35
0
1
63
1.05
32560--32615
21
2.8
20
71
15
53
21
1
5
71
1.15

Tables:   1

The End!