genome.fa.s4943.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004943.1 Hibiscus syriacus cultivar Beakdansim tig00011114_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51100

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4077--4130	21	2.7	20	80	5	63	33	12	18	35	1.89
4650--4809	59	2.7	59	90	0	241	36	11	16	35	1.86
5103--5335	68	3.4	68	86	2	297	32	14	22	30	1.94
5182--5353	68	2.5	68	85	0	173	31	14	23	29	1.94
5287--5681	81	4.9	81	88	1	562	39	13	20	26	1.89
5289--5681	161	2.4	161	89	1	581	39	12	20	26	1.89
5697--5839	59	2.4	59	92	1	243	30	12	18	38	1.88
6097--6315	68	3.2	68	89	0	321	30	16	23	29	1.96
6097--6341	68	3.6	68	86	2	303	31	15	23	28	1.96
6097--6370	68	4.0	68	83	3	221	31	15	23	28	1.95
6097--6370	136	2.0	136	80	2	309	31	15	23	28	1.95
6303--6704	81	5.0	81	86	2	533	40	12	19	27	1.87
6676--6735	29	2.1	29	87	0	84	43	6	23	26	1.78
7783--7814	2	16.0	2	100	0	64	50	0	0	50	1.00
9150--9186	18	2.1	18	94	0	65	40	10	27	21	1.86
9206--9291	32	2.7	32	87	0	136	44	5	16	33	1.71
13628--13660	17	2.0	17	88	5	50	39	0	0	60	0.97
19187--19244	26	2.2	27	84	9	75	27	1	1	68	1.08
19256--19310	2	27.5	2	78	7	58	40	1	0	58	1.09
19206--19317	38	3.1	35	80	19	133	33	1	0	64	1.10
19206--19328	40	3.2	37	78	15	126	31	2	0	65	1.12
19277--19479	4	50.2	4	69	19	68	21	5	1	70	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19277--19394	13	9.8	12	70	11	71	22	3	0	72	1.04
22519--22574	11	4.7	11	81	16	67	76	3	17	1	1.01
22526--22584	13	4.8	12	80	15	68	76	3	18	1	1.02
22526--22585	26	2.4	26	89	8	90	75	3	18	3	1.09
22657--22794	69	2.0	69	94	0	240	37	20	14	27	1.91
23718--23837	32	3.8	32	78	10	129	29	13	21	35	1.91
24414--24688	106	2.6	105	89	1	399	37	24	17	21	1.94
24661--24779	59	2.0	59	100	0	238	26	25	22	25	2.00
25024--25221	87	2.2	89	90	3	319	32	18	12	35	1.89
25150--25338	37	5.4	37	69	16	114	28	18	13	39	1.88
25126--25365	102	2.3	101	90	2	372	32	18	12	37	1.88
25407--25504	36	2.7	37	88	3	153	30	22	12	34	1.91
25412--25602	102	1.9	103	84	5	262	28	20	12	39	1.88
25520--25638	36	3.3	36	86	6	168	26	19	14	39	1.90
25575--25649	36	2.1	36	82	0	87	32	22	12	33	1.91
26843--26981	39	3.5	40	75	17	146	32	2	1	64	1.15
26907--27015	7	15.4	7	71	19	50	29	1	0	67	1.07
26907--26971	33	1.9	34	87	3	96	33	1	0	64	1.03
26830--26971	76	1.9	77	86	8	211	31	2	2	64	1.17
26969--27056	13	7.3	12	72	18	67	18	4	1	76	1.02
26937--27056	47	2.6	48	77	13	117	23	3	0	72	1.05
26934--27019	17	5.4	16	67	14	52	25	1	1	72	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26958--27041	23	3.6	23	74	17	75	19	4	1	75	1.05
26992--27069	37	2.1	38	81	11	90	16	7	1	74	1.11
49266--49336	33	2.2	32	87	2	97	43	29	9	16	1.80
50290--50388	41	2.4	41	86	0	126	30	18	20	31	1.96
50313--50401	41	2.2	41	85	0	115	28	16	22	32	1.96

Tables:   1

The End!