Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004944.1 Hibiscus syriacus cultivar Beakdansim tig00011115_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70615

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3939--3991
2
27.0
2
88
11
83
50
0
1
47
1.12
8132--8192
19
3.0
20
78
7
61
60
1
3
34
1.23
8131--8200
19
3.7
17
75
17
50
61
1
2
34
1.20
13726--13805
29
2.8
29
96
0
142
32
16
15
36
1.89
19896--19921
2
13.0
2
100
0
52
50
0
0
50
1.00
21494--21544
12
4.2
12
74
18
52
31
3
1
62
1.24
24612--24644
2
16.5
2
100
0
66
51
0
0
48
1.00
25242--25424
42
4.4
42
91
2
246
34
21
21
21
1.96
25266--25425
42
3.8
42
94
1
259
33
21
21
22
1.97
25282--25463
84
2.2
81
82
8
206
35
21
19
23
1.96
25451--25569
41
2.9
41
86
2
159
35
15
16
32
1.90
25510--25612
41
2.5
41
84
3
118
34
15
14
34
1.88
25674--26017
41
8.3
41
81
4
359
27
17
19
35
1.95
28748--28933
43
4.3
43
85
4
230
30
19
22
27
1.98
28748--28933
87
2.2
86
87
1
255
30
19
22
27
1.98
28748--28974
43
5.3
43
83
3
204
28
21
22
28
1.99
29799--29859
32
1.9
32
86
6
88
22
0
19
57
1.41
30757--30802
16
2.8
16
87
9
58
34
0
10
54
1.36
30821--30902
22
3.8
22
95
1
139
18
1
23
57
1.47
30817--30911
22
4.2
24
89
6
114
18
1
24
55
1.49
30779--30847
32
2.1
34
86
5
97
24
0
17
57
1.39
31968--32136
30
5.9
29
76
8
168
30
4
18
46
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32010--32136
27
4.5
27
74
13
121
29
5
18
47
1.71
31980--32136
56
2.8
57
88
1
235
28
5
19
47
1.70
31976--32145
86
2.0
86
81
9
204
30
4
18
46
1.69
33459--33517
31
1.9
31
89
0
91
42
8
6
42
1.61
34314--34356
22
2.0
21
90
4
68
46
0
0
53
1.00
37227--37255
12
2.3
13
94
5
51
68
0
0
31
0.89
43936--43969
6
5.5
6
96
3
59
67
0
0
32
0.91
44813--44848
2
18.5
2
94
5
65
47
0
0
52
1.00
46073--46126
21
2.7
20
82
5
63
44
1
0
53
1.11
54266--54330
24
2.7
24
79
18
64
49
4
0
46
1.22
54302--54348
22
2.1
23
88
4
69
44
2
0
53
1.12
54338--54388
23
2.2
23
89
6
77
52
3
0
43
1.19
54465--54533
19
3.6
18
71
21
52
50
1
1
46
1.19
54428--54513
27
3.1
27
73
15
77
48
1
2
47
1.22
56797--56839
16
2.8
16
86
10
63
67
4
2
25
1.22
56815--56854
18
2.2
18
86
8
55
70
5
2
22
1.19
56896--56967
33
2.1
34
85
7
94
63
2
1
31
1.17
56918--57011
12
7.5
12
68
21
50
67
1
5
26
1.19
56954--57010
23
2.7
21
81
8
62
70
0
7
22
1.11
57028--57065
18
2.1
18
85
9
51
73
0
10
15
1.09
58270--58315
2
23.5
2
95
4
85
50
0
0
50
1.00
58269--58359
12
8.7
10
74
18
55
50
1
1
47
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60477--60518
7
5.7
7
88
5
57
0
14
4
80
0.86
60475--60527
23
2.3
23
77
3
63
5
11
3
79
1.03
60476--60517
15
2.8
16
85
10
52
0
14
4
80
0.86

Tables:   1

The End!