Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004947.1 Hibiscus syriacus cultivar Beakdansim tig00011122_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135033

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
315--428
35
3.3
35
86
6
160
28
36
3
31
1.74
3988--4037
19
2.8
17
82
11
55
76
4
18
2
1.04
9119--9160
19
2.2
19
86
0
57
50
4
7
38
1.51
14846--14878
15
2.2
15
94
0
57
0
27
0
72
0.85
14845--14877
10
3.4
10
91
4
50
0
30
0
69
0.88
17726--17769
16
2.6
18
78
14
56
68
0
18
13
1.22
17900--17948
14
3.6
14
86
10
66
2
18
0
79
0.83
20702--20772
20
3.6
20
92
1
108
36
18
5
39
1.74
26580--26622
20
2.2
20
87
4
61
34
9
6
48
1.62
28248--28286
20
2.0
20
89
0
60
82
12
5
0
0.83
28269--28313
15
3.0
15
87
12
58
77
8
13
0
0.98
28269--28300
13
2.5
13
100
0
64
81
6
12
0
0.87
28248--28302
22
2.7
19
76
17
56
81
10
7
0
0.86
36586--36626
20
2.1
19
86
4
55
34
7
7
51
1.58
44276--44308
17
1.9
17
93
0
57
36
0
33
30
1.58
44600--44640
6
6.7
6
83
5
55
2
17
2
78
0.98
45008--45119
35
3.2
35
88
1
161
31
4
35
28
1.77
49677--49727
20
2.6
20
90
3
77
33
15
7
43
1.76
50438--50506
19
3.5
19
83
11
77
75
4
15
4
1.12
50443--50518
34
2.3
32
80
14
84
73
3
15
6
1.19
53742--53792
20
2.6
20
90
3
77
35
15
5
43
1.71
55875--55916
22
1.9
22
85
9
59
54
7
2
35
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57908--57949
16
2.6
16
88
0
66
40
19
33
7
1.78
58147--58191
23
2.0
23
83
16
58
51
11
6
31
1.63
61069--61110
13
3.4
12
80
12
50
7
14
4
73
1.21
61061--61110
24
2.0
25
88
11
77
6
16
4
74
1.17
62556--62600
23
2.0
23
83
16
58
51
11
6
31
1.63
64727--64765
16
2.4
16
95
0
69
41
17
33
7
1.79
65819--65885
17
3.9
17
80
7
64
40
10
11
37
1.77
65842--65885
18
2.5
18
89
10
65
43
13
6
36
1.71
68405--68449
16
2.8
16
86
0
63
42
15
28
13
1.85
69498--69564
17
3.9
17
80
7
64
40
10
11
37
1.77
69521--69564
18
2.5
18
89
10
65
43
13
6
36
1.71
72243--72289
24
2.0
24
82
0
58
27
19
23
29
1.98
81484--81536
23
2.2
24
90
3
81
9
16
11
62
1.54
84740--84799
30
2.0
31
83
3
77
26
8
10
55
1.61
85676--85725
20
2.5
20
87
3
66
38
12
6
44
1.66
86433--86491
22
2.7
23
81
5
68
77
3
16
1
0.98
89874--89924
20
2.6
20
90
3
77
35
15
5
43
1.71
93389--93430
13
3.4
12
80
12
50
73
4
14
7
1.21
93389--93435
24
1.9
25
87
12
71
72
4
17
6
1.22
101504--101536
15
2.2
15
94
0
57
36
21
15
27
1.93
102984--103018
18
1.9
18
88
11
54
80
2
17
0
0.84
109715--109739
11
2.3
11
100
0
50
84
8
0
8
0.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109762--109803
20
2.2
19
83
12
50
52
19
11
16
1.74
118313--118368
11
4.8
11
74
20
51
78
3
16
1
0.97
131537--131590
23
2.4
22
87
6
81
27
5
16
50
1.68

Tables:   1

The End!